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It was duplicating the prefix in the form
${EPREFIX}/usr/${CTARGET}/${EPREFIX}.
This also fixes the kernel header version check, which was broken for
native prefixed builds.
Bug: https://bugs.gentoo.org/642604
Closes: https://github.com/gentoo/gentoo/pull/12435
Package-Manager: Portage-2.3.69, Repoman-2.3.13
Signed-off-by: James Le Cuirot <chewi@gentoo.org>
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