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gentoo/sci-biology
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David Seifert 8f75a76e87 sci-biology/poa: [QA] inherit toolchain-funcs.eclass directly 
Package-Manager: Portage-2.3.88, Repoman-2.3.20
Signed-off-by: David Seifert <soap@gentoo.org>
2020-02-13 22:37:57 +01:00
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aaindex
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abyss
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amap
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amos
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ApE
sci-biology/ApE: Add bindist restriction
2019-09-19 08:13:21 +02:00
augustus
sci-biology/augustus: Port to EAPI 7
2019-12-11 00:48:28 +01:00
bamtools
*/*: Switch sci-biology proj to cmake.eclass
2020-01-05 18:40:24 +01:00
bcftools
sci-biology/bcftools: Switch to PYTHON_MULTI_USEDEP API
2020-02-09 17:35:15 +01:00
bedtools
sci-biology/bedtools: Remove py2 where possible
2020-02-10 14:26:25 +01:00
bfast
*/*: [QA] Fix trivial cases of MissingTestRestrict
2019-12-11 00:22:38 +01:00
biogrep
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biopandas
sci-biology/biopandas: Remove Python 2
2020-01-16 06:16:48 +01:00
bioperl
sci-biology/bioperl: Drop unmaintained -9999
2019-12-15 21:24:01 +01:00
bioperl-db
sci-biology/bioperl-db: Drop unmaintained -9999
2019-12-15 21:24:02 +01:00
bioperl-network
sci-biology/bioperl-network: Drop unmaintained -9999
2019-12-15 21:24:03 +01:00
bioperl-run
sci-biology/bioperl-run: Drop unmaintained -9999
2019-12-15 21:24:04 +01:00
biopython
*/*: Clean PYTHON_COMPAT of obsolete impls
2020-01-05 11:55:46 +01:00
bioruby
sci-biology/bioruby: amd64 stable wrt bug #690048
2019-09-08 12:41:59 +02:00
biosql
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blat
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bowtie
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bwa
sci-biology/bwa: Fix -fno-common bug
2020-01-25 20:38:35 +01:00
cd-hit
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clustal-omega
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clustalw
*/*: Bump copyright on files touched this year
2020-02-11 18:07:17 +01:00
clustalw-mpi
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clustalx
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consed
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cutg
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dialign2
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dialign-tx
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diya
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elph
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embassy
sci-biology/embassy: Fix LICENSE.
2019-12-24 15:59:15 +01:00
embassy-cbstools
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embassy-clustalomega
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embassy-domainatrix
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embassy-domalign
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embassy-domsearch
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embassy-emnu
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embassy-esim4
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embassy-hmmer
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embassy-iprscan
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embassy-meme
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embassy-mse
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embassy-phylipnew
sci-biology/embassy-phylipnew: Change LICENSE to "free-noncomm".
2019-12-28 14:56:19 +01:00
embassy-signature
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embassy-structure
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embassy-topo
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embassy-vienna
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emboss
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eugene
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exonerate
*/*: [QA] Fix trivial cases of MissingTestRestrict
2019-12-11 00:22:38 +01:00
express
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fasta
*/*: [QA] Remove redundant || die guards
2019-12-11 13:32:00 +01:00
fasttree
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fastx_toolkit
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finchtv
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foldingathome
sci-biology/foldingathome: Permit dev-libs/openssl-compat
2019-06-14 19:46:35 +02:00
gatk
sci-biology/gatk: Drop broken -9999
2019-12-15 21:24:06 +01:00
GBrowse
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gibbs
sci-biology/gibbs: Port to EAPI 7
2019-12-11 00:48:12 +01:00
glimmer
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glimmerhmm
sci-biology/glimmerhmm: Port to EAPI 7
2019-12-11 00:48:09 +01:00
gmap
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hmmer
*/*: [QA] Fix trivial cases of MissingTestRestrict
2019-12-11 00:22:38 +01:00
HTSeq
sci-biology/HTSeq: Remove Python 2
2020-01-16 07:37:51 +01:00
iedera
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infernal
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iqpnni
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kalign
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kallisto
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lagan
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last
sci-biology/last: Remove old
2019-12-11 00:48:15 +01:00
libgtextutils
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mafft
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maq
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maqview
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mcl
sci-biology/mcl: drop old EAPI
2019-11-23 22:21:42 -05:00
meme
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mira
*/*: [QA] Remove redundant || die guards
2019-12-11 13:32:00 +01:00
mosaik
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mothur
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mrbayes
sci-biology/mrbayes: Remove old
2019-12-11 00:48:22 +01:00
mummer
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muscle
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ncbi-tools
*/*: [QA] Remove redundant || die guards
2019-12-11 13:32:00 +01:00
newick-utils
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njplot
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pals
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paml
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phrap
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phred
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phylip
sci-biology/phylip: Change LICENSE to "free-noncomm".
2019-12-28 14:56:18 +01:00
phyml
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picard
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piler
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pilercr
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plink
sci-biology/plink: Remove old
2019-12-11 00:48:19 +01:00
poa
sci-biology/poa: [QA] inherit toolchain-funcs.eclass directly
2020-02-13 22:37:57 +01:00
prank
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primer3
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prints
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probcons
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prodigal
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profphd
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prosite
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psipred
*/*: [QA] Fix trivial cases of MissingTestRestrict
2019-12-11 00:22:38 +01:00
pysam
sci-biology/pysam: Remove py2
2020-02-11 13:17:22 +01:00
qrna
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raxml
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rebase
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recon
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repeatmasker
*/*: [QA] Remove redundant || die guards
2019-12-11 13:32:00 +01:00
repeatmasker-libraries
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rmblast
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rnaview
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samtools
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seaview
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seqan
*/*: [QA] Fix trivial cases of MissingTestRestrict
2019-12-11 00:22:38 +01:00
shrimp
sci-biology/shrimp: Remove old
2019-12-11 00:48:34 +01:00
sibsim4
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sim4
*/*: Remove mirror://gentoo rename hack
2019-10-05 14:28:07 +02:00
STAR
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stride
sci-biology/stride: Port to EAPI 7
2019-08-17 13:19:19 +02:00
t-coffee
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tophat
sci-biology/tophat: Switch to PYTHON_MULTI_USEDEP API
2020-02-09 17:35:16 +01:00
transfac
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tree-puzzle
sci-biology/tree-puzzle: Port to EAPI 7
2019-12-11 00:48:25 +01:00
treeviewx
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trf
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trnascan-se
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uchime
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ucsc-genome-browser
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unafold
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update-blastdb
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vcftools
sci-biology/vcftools: Sort KEYWORDS
2019-07-15 17:25:58 +02:00
velvet
sci-biology/velvet: Port to EAPI 7
2019-12-11 00:48:31 +01:00
vienna-rna
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wgs-assembler
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wise
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yass
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metadata.xml
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