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sci-biology/stride: Port to EAPI 7
Package-Manager: Portage-2.3.71, Repoman-2.3.17 Signed-off-by: David Seifert <soap@gentoo.org>
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@@ -0,0 +1,21 @@
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--- a/Makefile
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+++ b/Makefile
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@@ -1,4 +1,3 @@
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-CC = gcc -g
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FLAGS = -lm -o
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SOURCE = stride.c splitstr.c rdpdb.c initchn.c geometry.c thr2one.c one2thr.c filename.c tolostr.c strutil.c place_h.c hbenergy.c memory.c helix.c sheet.c rdmap.c phipsi.c command.c molscr.c die.c hydrbond.c mergepat.c fillasn.c escape.c p_jrnl.c p_rem.c p_atom.c p_helix.c p_sheet.c p_turn.c p_ssbond.c p_expdta.c p_model.c p_compnd.c report.c nsc.c area.c ssbond.c chk_res.c chk_atom.c turn.c pdbasn.c dssp.c outseq.c chkchain.c elem.c measure.c asngener.c p_endmdl.c stred.c contact_order.c contact_map.c
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@@ -7,12 +6,9 @@
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BINDIR = .
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-.c.o:
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- $(CC) -c $< -o $@
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-
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stride : $(OBJECT)
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- $(CC) $(OBJECT) $(FLAGS) $(BINDIR)/stride
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+ $(CC) $(LDFLAGS) $(OBJECT) $(FLAGS) $(BINDIR)/stride
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$(OBJECT) : stride.h protot.h
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@@ -1,11 +0,0 @@
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--- Makefile 2009-10-27 21:18:45.000000000 +0100
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+++ Makefile.new 2009-10-27 21:19:00.000000000 +0100
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@@ -12,7 +12,7 @@
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stride : $(OBJECT)
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- $(CC) $(OBJECT) $(FLAGS) $(BINDIR)/stride
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+ $(CC) $(LDFLAGS) $(OBJECT) $(FLAGS) $(BINDIR)/stride
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$(OBJECT) : stride.h protot.h
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@@ -1,9 +1,9 @@
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# Copyright 1999-2019 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=5
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EAPI=7
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inherit eutils toolchain-funcs
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inherit toolchain-funcs
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DESCRIPTION="Protein secondary structure assignment from atomic coordinates"
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HOMEPAGE="http://webclu.bio.wzw.tum.de/stride/"
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@@ -11,25 +11,21 @@ SRC_URI="
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ftp://ftp.ebi.ac.uk/pub/software/unix/${PN}/src/${PN}.tar.gz -> ${P}.tar.gz
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https://dev.gentoo.org/~jlec/distfiles/${PN}-20060723-update.patch.bz2"
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SLOT="0"
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LICENSE="STRIDE"
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SLOT="0"
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KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux ~x86-macos"
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IUSE=""
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S="${WORKDIR}"
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RESTRICT="mirror bindist"
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src_prepare() {
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S="${WORKDIR}"
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PATCHES=(
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# this patch updates the source to the most recent
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# version which was kindly provided by the author
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epatch \
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"${DISTDIR}/${PN}-20060723-update.patch.bz2" \
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"${FILESDIR}"/${PN}-LDFLAGS.patch
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"${S}"/${PN}-20060723-update.patch
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"${FILESDIR}"/${PN}-20011129-fix-buildsystem.patch
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)
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# fix makefile
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sed -e "/^CC/s|gcc -g|$(tc-getCC) ${CFLAGS}|" -i Makefile || \
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die "Failed to fix Makefile"
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src_configure() {
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tc-export CC
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}
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src_install() {
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