sci-biology/stride: Port to EAPI 7

Package-Manager: Portage-2.3.71, Repoman-2.3.17
Signed-off-by: David Seifert <soap@gentoo.org>
This commit is contained in:
David Seifert
2019-08-17 13:19:19 +02:00
parent df9c66e3f9
commit bcc75ebcff
3 changed files with 31 additions and 25 deletions

View File

@@ -0,0 +1,21 @@
--- a/Makefile
+++ b/Makefile
@@ -1,4 +1,3 @@
-CC = gcc -g
FLAGS = -lm -o
SOURCE = stride.c splitstr.c rdpdb.c initchn.c geometry.c thr2one.c one2thr.c filename.c tolostr.c strutil.c place_h.c hbenergy.c memory.c helix.c sheet.c rdmap.c phipsi.c command.c molscr.c die.c hydrbond.c mergepat.c fillasn.c escape.c p_jrnl.c p_rem.c p_atom.c p_helix.c p_sheet.c p_turn.c p_ssbond.c p_expdta.c p_model.c p_compnd.c report.c nsc.c area.c ssbond.c chk_res.c chk_atom.c turn.c pdbasn.c dssp.c outseq.c chkchain.c elem.c measure.c asngener.c p_endmdl.c stred.c contact_order.c contact_map.c
@@ -7,12 +6,9 @@
BINDIR = .
-.c.o:
- $(CC) -c $< -o $@
-
stride : $(OBJECT)
- $(CC) $(OBJECT) $(FLAGS) $(BINDIR)/stride
+ $(CC) $(LDFLAGS) $(OBJECT) $(FLAGS) $(BINDIR)/stride
$(OBJECT) : stride.h protot.h

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@@ -1,11 +0,0 @@
--- Makefile 2009-10-27 21:18:45.000000000 +0100
+++ Makefile.new 2009-10-27 21:19:00.000000000 +0100
@@ -12,7 +12,7 @@
stride : $(OBJECT)
- $(CC) $(OBJECT) $(FLAGS) $(BINDIR)/stride
+ $(CC) $(LDFLAGS) $(OBJECT) $(FLAGS) $(BINDIR)/stride
$(OBJECT) : stride.h protot.h

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@@ -1,9 +1,9 @@
# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=5
EAPI=7
inherit eutils toolchain-funcs
inherit toolchain-funcs
DESCRIPTION="Protein secondary structure assignment from atomic coordinates"
HOMEPAGE="http://webclu.bio.wzw.tum.de/stride/"
@@ -11,25 +11,21 @@ SRC_URI="
ftp://ftp.ebi.ac.uk/pub/software/unix/${PN}/src/${PN}.tar.gz -> ${P}.tar.gz
https://dev.gentoo.org/~jlec/distfiles/${PN}-20060723-update.patch.bz2"
SLOT="0"
LICENSE="STRIDE"
SLOT="0"
KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux ~x86-macos"
IUSE=""
S="${WORKDIR}"
RESTRICT="mirror bindist"
src_prepare() {
S="${WORKDIR}"
PATCHES=(
# this patch updates the source to the most recent
# version which was kindly provided by the author
epatch \
"${DISTDIR}/${PN}-20060723-update.patch.bz2" \
"${FILESDIR}"/${PN}-LDFLAGS.patch
"${S}"/${PN}-20060723-update.patch
"${FILESDIR}"/${PN}-20011129-fix-buildsystem.patch
)
# fix makefile
sed -e "/^CC/s|gcc -g|$(tc-getCC) ${CFLAGS}|" -i Makefile || \
die "Failed to fix Makefile"
src_configure() {
tc-export CC
}
src_install() {