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gentoo/sci-biology
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David Seifert f49f5a33ef
sci-biology/pysam: drop 0.23.0 
Signed-off-by: David Seifert <soap@gentoo.org>
2025-11-30 16:30:01 +01:00
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aaindex
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abyss
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amap
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augustus
*/*: Add := to virtual/zlib deps, part 1
2025-11-04 10:36:27 +01:00
bamtools
sci-*/*: update for virtual/zlib
2025-11-04 09:17:06 +01:00
bcftools
sci-biology/bcftools: bring back 1.21 for pysam
2025-11-29 14:40:20 +01:00
bedtools
*/*: Use := on virtual/zlib deps, part 6
2025-11-04 11:08:49 +01:00
bfast
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biogrep
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bioperl
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bioperl-db
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bioperl-network
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bioperl-run
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biopython
sci-biology/biopython: remove unused patch(es)
2025-05-27 09:27:36 +01:00
biosql
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blat
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bowtie
*/*: Add := to virtual/zlib deps, part 1
2025-11-04 10:36:27 +01:00
bwa
*/*: Use := on virtual/zlib deps, part 6
2025-11-04 11:08:49 +01:00
cd-hit
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clustal-omega
sci-biology/clustal-omega: use dot-a.eclass
2025-07-28 23:34:24 -04:00
clustalw
*/*: destable sparc
2025-09-02 20:00:14 +03:00
clustalw-mpi
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cutg
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dialign2
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dialign-tx
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elph
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embassy
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embassy-cbstools
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embassy-clustalomega
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embassy-domainatrix
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embassy-domalign
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embassy-domsearch
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embassy-emnu
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embassy-esim4
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embassy-hmmer
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embassy-iprscan
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embassy-mse
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embassy-phylipnew
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embassy-signature
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embassy-structure
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embassy-topo
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embassy-vienna
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emboss
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eugene
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exonerate
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fasta
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fasttree
sci-biology/fasttree: Raise cmake_minimum_required to 3.31
2025-10-05 19:44:05 +02:00
fastx_toolkit
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finchtv
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foldingathome
*/*: Add := to virtual/zlib deps, part 1
2025-11-04 10:36:27 +01:00
glimmer
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glimmerhmm
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gmap
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hmmer
sci-biology/hmmer: use dot-a.eclass
2025-08-05 15:53:32 -04:00
iedera
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infernal
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iqpnni
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kalign
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kallisto
sci-*/*: update for virtual/zlib
2025-11-04 09:17:06 +01:00
lagan
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libgtextutils
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mafft
sci-biology/mafft: add 7.525
2025-11-09 11:55:17 +01:00
maq
*/*: Use := on virtual/zlib deps, part 6
2025-11-04 11:08:49 +01:00
maqview
*/*: Use := on virtual/zlib deps, part 6
2025-11-04 11:08:49 +01:00
mcl
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mosaik
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mothur
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mrbayes
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mummer
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muscle
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newick-utils
sci-biology/newick-utils: add dev-libs/libxml2 subslot op for incoming ABI break
2025-06-09 04:11:17 +01:00
pals
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paml
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phylip
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phyml
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piler
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pilercr
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plink
*/*: Add := to virtual/zlib deps, part 1
2025-11-04 10:36:27 +01:00
poa
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prank
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primer3
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prints
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probcons
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prodigal
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profphd
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prosite
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pysam
sci-biology/pysam: drop 0.23.0
2025-11-30 16:30:01 +01:00
qrna
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raxml
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rebase
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recon
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rnaview
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samtools
sci-biology/samtools: bring back 1.21 for pysam
2025-11-29 14:40:19 +01:00
seaview
*/*: Add := to virtual/zlib deps, part 1
2025-11-04 10:36:27 +01:00
seqan
sci-*/*: update for virtual/zlib
2025-11-04 09:17:06 +01:00
sibsim4
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sim4
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STAR
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stride
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t-coffee
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tree-puzzle
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treeviewx
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trf
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trnascan-se
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uchime
sci-biology/uchime: Fix build w/ cmake-4
2025-10-05 19:44:06 +02:00
ucsc-genome-browser
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unafold
sci-biology/unafold: add missing Perl BDEPENDs
2025-07-05 06:09:28 +01:00
update-blastdb
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vcftools
*/*: Add := to virtual/zlib deps, part 1
2025-11-04 10:36:27 +01:00
velvet
Move {llvm-core → llvm-runtimes}/clang-runtime
2025-09-02 16:32:22 +02:00
wise
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yass
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metadata.xml
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