sci-biology/pysam: drop 0.23.0

Signed-off-by: David Seifert <soap@gentoo.org>

sci-biology/pysam/Manifest

@@ -1,2 +1 @@
-DIST pysam-0.23.0.gh.tar.gz 4076476 BLAKE2B 74f5fd99aff357c59aa4cd13214fbb87577d213461feff2afd59679c6b442ccee1fe23a7b7d6ddc723f57f4e00516fb7b67207e8f8619b707d1f909c62663006 SHA512 7c7b3806dbf316f7d9283dbabcd86e55d5dd18a01a127af5f26279e2266fb9b6e44546de0d22c82de963eca19c9e9b3ed1cc00c465acc2ddd810824902c87add
 DIST pysam-0.23.3.gh.tar.gz 4077706 BLAKE2B 52ea1866188374b6d832113f49de88b9b4fe1f777f0c81184aadfa5acd1f0e3048996e31a384061f0d1f9a289574c12e3e0a1c28a960e1e2f3f7af0c4e2b8d9a SHA512 e259a64ed722b72309827695585f429a6e59641223f5432c9cd7e673fd04fcbd5963618e9145315373e557edce532bf1a312db185bcc4235ff699357e453e07b

sci-biology/pysam/pysam-0.23.0.ebuild

@@ -1,68 +0,0 @@
-# Copyright 1999-2025 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-DISTUTILS_EXT=1
-DISTUTILS_USE_PEP517=setuptools
-PYTHON_COMPAT=( python3_{10..13} )
-
-inherit distutils-r1
-
-DESCRIPTION="Python interface for the SAM/BAM sequence alignment and mapping format"
-HOMEPAGE="
-	https://github.com/pysam-developers/pysam
-	https://pypi.org/project/pysam/"
-SRC_URI="https://github.com/pysam-developers/pysam/archive/v${PV}.tar.gz -> ${P}.gh.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-
-RDEPEND="=sci-libs/htslib-1.21*:="
-DEPEND="${RDEPEND}"
-BDEPEND="
-	dev-python/cython[${PYTHON_USEDEP}]
-	test? (
-		=sci-biology/bcftools-1.21*
-		=sci-biology/samtools-1.21*
-	)"
-
-distutils_enable_tests pytest
-
-EPYTEST_DESELECT=(
-	# only work with bundled htslib
-	'tests/tabix_test.py::TestRemoteFileHTTP'
-	'tests/tabix_test.py::TestRemoteFileHTTPWithHeader'
-
-	'tests/AlignedSegment_test.py::TestBaseModifications'
-)
-
-python_prepare_all() {
-
-	# unbundle htslib
-	export HTSLIB_MODE="external"
-	export HTSLIB_INCLUDE_DIR="${ESYSROOT}"/usr/include
-	export HTSLIB_LIBRARY_DIR="${ESYSROOT}"/usr/$(get_libdir)
-	rm -r htslib || die
-
-	if use test; then
-		einfo "Building test data"
-		emake -C tests/pysam_data
-		emake -C tests/cbcf_data
-	fi
-
-	# breaks with parallel build
-	# need to avoid dropping .so plugins into
-	# build-lib, which breaks tests
-	DISTUTILS_ARGS=(
-		build_ext
-		--inplace
-		-j1
-	)
-	distutils-r1_python_prepare_all
-}
-
-python_test() {
-	rm -rf pysam || die
-	epytest
-}