mirror of
https://github.com/gentoo-mirror/gentoo.git
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dev-lang/R: remove old "unused" versions.
Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
This commit is contained in:
Michael Orlitzky
@@ -1,6 +1,3 @@
|
||||
DIST R-3.4.1.tar.gz 30200109 BLAKE2B 03602e9a48759caee8ce047fa6273df7a54af089de4489e21953c0e3fc7bfdf720d924f1e0167d3dbf65f63ed42ac10dea8b45289b921cda1c0e6d25a0063ebb SHA512 19bd50c87dc001ef947c15c1760f27ac8986ff6b43c6d90d3093ae184e42963027ef06faf31ec57ac9e519af7a35a2f53f8ea23ef75d800ebbd02945cedc4651
|
||||
DIST R-3.5.3.tar.gz 30205979 BLAKE2B 60dde4c1a7874df0b113630577d943d581d9e0844383a5cb7eda7f62470177d541704a888c33ded216f8b1f088cda493d7716693f5e2451effe3639ce2286dd1 SHA512 077cbd4bc9f19a3a2485afbd4d8e08e0754ddcb9a10164cbc8478f239d5ed0ffaf6796929f154cce1c8aea549c32d460049fc036dc326174d1dbb0a1ddb5f5ef
|
||||
DIST R-3.6.0.tar.gz 30449618 BLAKE2B 2fb2f1252f5ead97ab42eb1f71fa0be1e8aec2f6cce182956ec1c35b43b70b58f579faf5f3ca11efb8e9c24a9ed836b5b690cb23858249bc7f575aca4709bc3b SHA512 b2e17b909b6387abb964492e2e9370f913295ca7ac99bab0e965c43ed3c4635e27468c326fb2bca3c529b03c731b0170d9e777a194ad4d6c5a983c050223d8c8
|
||||
DIST R-3.6.2.tar.gz 33311930 BLAKE2B 53f344e80e017064a275c271d98be714e210193931a120e7ebc79ee6cf0ebc0c24c090acc25560998f26600c05305147816ab782632d99beaea83b3a9b5e2a21 SHA512 17513e9f4dd27c61c11f7aa45227aeeeefb375bf5d4e193b471724f379a1b2da33e127cbe91aa175cbbbb048b892047e2f610280585c8159242a6c94790b07f9
|
||||
DIST R-3.6.3.tar.gz 33308185 BLAKE2B f82751e21d3b502132f8f27d4fc47a921fb085a50c3da3b45e08fbbdd1ab3d42e89b4fa6653a570c21176d79f492277b1d0b86c3c9f4da1386d8b6e4771d4d2c SHA512 9b1dc78922e431bd1af81e6e560b10ad04d121718f680fed32db735d561fd40ea6028759976722db11559f1a78fe684119b766f0567128cb2ee5003aa87a0931
|
||||
DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
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|
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@@ -1,204 +0,0 @@
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# Copyright 1999-2020 Gentoo Authors
|
||||
# Distributed under the terms of the GNU General Public License v2
|
||||
|
||||
EAPI=7
|
||||
|
||||
inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib toolchain-funcs
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# latest git commit for R bash completion: https://github.com/deepayan/rcompletion
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||||
BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
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|
||||
DESCRIPTION="Language and environment for statistical computing and graphics"
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HOMEPAGE="http://www.r-project.org/"
|
||||
SRC_URI="
|
||||
mirror://cran/src/base/R-3/${P}.tar.gz
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||||
https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
|
||||
|
||||
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
|
||||
SLOT="0"
|
||||
KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux ~x64-macos"
|
||||
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
|
||||
REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
|
||||
|
||||
CDEPEND="
|
||||
app-arch/bzip2:0=
|
||||
app-arch/xz-utils:0=
|
||||
app-text/ghostscript-gpl
|
||||
>=dev-libs/libpcre-8.35:3=
|
||||
net-libs/libtirpc
|
||||
net-misc/curl
|
||||
virtual/blas:0
|
||||
|| ( >=sys-apps/coreutils-8.15 app-misc/realpath )
|
||||
cairo? ( x11-libs/cairo:0=[X=] x11-libs/pango:0= )
|
||||
icu? ( dev-libs/icu:= )
|
||||
jpeg? ( virtual/jpeg:0 )
|
||||
lapack? ( virtual/lapack:0 )
|
||||
perl? ( dev-lang/perl )
|
||||
png? ( media-libs/libpng:0= )
|
||||
readline? ( sys-libs/readline:0= )
|
||||
tiff? ( media-libs/tiff:0= )
|
||||
tk? ( dev-lang/tk:0= )
|
||||
X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
|
||||
|
||||
DEPEND="${CDEPEND}
|
||||
virtual/pkgconfig
|
||||
doc? (
|
||||
virtual/latex-base
|
||||
dev-texlive/texlive-fontsrecommended
|
||||
)"
|
||||
|
||||
RDEPEND="${CDEPEND}
|
||||
>=sys-libs/zlib-1.2.5.1-r2:0[minizip]
|
||||
java? ( >=virtual/jre-1.5 )"
|
||||
|
||||
RESTRICT="minimal? ( test )"
|
||||
|
||||
PATCHES=(
|
||||
"${FILESDIR}"/${PN}-3.4.1-parallel.patch
|
||||
"${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch
|
||||
)
|
||||
|
||||
pkg_pretend() {
|
||||
[[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
|
||||
}
|
||||
|
||||
pkg_setup() {
|
||||
if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
|
||||
if ! tc-check-openmp; then
|
||||
ewarn "OpenMP is not available in your current selected compiler"
|
||||
die "need openmp capable compiler"
|
||||
fi
|
||||
FORTRAN_NEED_OPENMP=1
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||||
fi
|
||||
fortran-2_pkg_setup
|
||||
filter-ldflags -Wl,-Bdirect -Bdirect
|
||||
# avoid using existing R installation
|
||||
unset R_HOME
|
||||
# Temporary fix for bug #419761
|
||||
if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
|
||||
append-flags -fno-ipa-cp-clone
|
||||
fi
|
||||
}
|
||||
|
||||
src_prepare() {
|
||||
default
|
||||
|
||||
# fix packages.html for doc (gentoo bug #205103)
|
||||
sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
|
||||
-i src/library/tools/R/Rd.R || die
|
||||
|
||||
# fix Rscript path when installed (gentoo bug #221061)
|
||||
sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT}/usr/$(get_libdir)/${PN}\"':" \
|
||||
-i src/unix/Makefile.in || die "sed unix Makefile failed"
|
||||
|
||||
# fix HTML links to manual (gentoo bug #273957)
|
||||
sed -e 's:\.\./manual/:manual/:g' \
|
||||
-i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
|
||||
|
||||
use lapack && \
|
||||
export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
|
||||
|
||||
if use X; then
|
||||
export R_BROWSER="$(type -p xdg-open)"
|
||||
export R_PDFVIEWER="$(type -p xdg-open)"
|
||||
fi
|
||||
use perl && \
|
||||
export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
|
||||
|
||||
# don't search /usr/local
|
||||
sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
|
||||
# Fix for Darwin (OS X)
|
||||
if use prefix; then
|
||||
if [[ ${CHOST} == *-darwin* ]] ; then
|
||||
sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
|
||||
-e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
|
||||
-e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
|
||||
-e "/SHLIB_EXT/s/\.so/.dylib/" \
|
||||
-i configure.ac || die
|
||||
# sort of "undo" 2.14.1-rmath-shared.patch
|
||||
sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT}/usr/$(get_libdir)/libRmath.dylib:" \
|
||||
-i src/nmath/standalone/Makefile.in || die
|
||||
else
|
||||
append-ldflags -Wl,-rpath="${EROOT}/usr/$(get_libdir)/R/lib"
|
||||
fi
|
||||
fi
|
||||
AT_M4DIR=m4
|
||||
eautoreconf
|
||||
}
|
||||
|
||||
src_configure() {
|
||||
# --with-system-tre \
|
||||
# tre is patched from upstream
|
||||
econf \
|
||||
--enable-byte-compiled-packages \
|
||||
--enable-R-shlib \
|
||||
--disable-R-framework \
|
||||
--with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
|
||||
rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
|
||||
$(use_enable java) \
|
||||
$(use_enable nls) \
|
||||
$(use_enable openmp) \
|
||||
$(use_enable profile R-profiling) \
|
||||
$(use_enable profile memory-profiling) \
|
||||
$(use_enable static-libs static) \
|
||||
$(use_enable static-libs R-static-lib) \
|
||||
$(use_with cairo) \
|
||||
$(use_with icu ICU) \
|
||||
$(use_with jpeg jpeglib) \
|
||||
$(use_with lapack) \
|
||||
$(use_with !minimal recommended-packages) \
|
||||
$(use_with png libpng) \
|
||||
$(use_with readline) \
|
||||
$(use_with tiff libtiff) \
|
||||
$(use_with tk tcltk) \
|
||||
$(use_with tk tk-config "${EPREFIX}"/usr/$(get_libdir)/tkConfig.sh) \
|
||||
$(use_with tk tcl-config "${EPREFIX}"/usr/$(get_libdir)/tclConfig.sh) \
|
||||
$(use_with X x)
|
||||
}
|
||||
|
||||
src_compile() {
|
||||
export VARTEXFONTS="${T}/fonts"
|
||||
emake AR="$(tc-getAR)"
|
||||
emake -C src/nmath/standalone \
|
||||
shared $(use static-libs && echo static) AR="$(tc-getAR)"
|
||||
use doc && emake info pdf
|
||||
}
|
||||
|
||||
src_install() {
|
||||
default
|
||||
emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
|
||||
|
||||
if use doc; then
|
||||
emake DESTDIR="${D}" install-info install-pdf
|
||||
dosym ../manual /usr/share/doc/${PF}/html/manual
|
||||
fi
|
||||
|
||||
cat > 99R <<-EOF
|
||||
LDPATH=${EROOT}/usr/$(get_libdir)/${PN}/lib
|
||||
R_HOME=${EROOT}/usr/$(get_libdir)/${PN}
|
||||
EOF
|
||||
doenvd 99R
|
||||
newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
|
||||
# The buildsystem has a different understanding of install_names than
|
||||
# we require. Since it builds modules like shared objects (wrong), many
|
||||
# objects (all modules) get an incorrect install_name. Fixing the build
|
||||
# system here is not really trivial.
|
||||
if [[ ${CHOST} == *-darwin* ]] ; then
|
||||
local mod
|
||||
pushd "${ED}"/usr/$(get_libdir)/R > /dev/null
|
||||
for mod in $(find . -name "*.dylib") ; do
|
||||
mod=${mod#./}
|
||||
install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \
|
||||
"${mod}"
|
||||
done
|
||||
popd > /dev/null
|
||||
fi
|
||||
docompress -x /usr/share/doc/${PF}/{BioC_mirrors.csv,CRAN_mirrors.csv,KEYWORDS.db,NEWS.rds}
|
||||
}
|
||||
|
||||
pkg_postinst() {
|
||||
if use java; then
|
||||
einfo "Re-initializing java paths for ${P}"
|
||||
R CMD javareconf
|
||||
fi
|
||||
}
|
||||
@@ -1,204 +0,0 @@
|
||||
# Copyright 1999-2020 Gentoo Authors
|
||||
# Distributed under the terms of the GNU General Public License v2
|
||||
|
||||
EAPI=7
|
||||
|
||||
inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib toolchain-funcs
|
||||
|
||||
# latest git commit for R bash completion: https://github.com/deepayan/rcompletion
|
||||
BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
|
||||
|
||||
DESCRIPTION="Language and environment for statistical computing and graphics"
|
||||
HOMEPAGE="http://www.r-project.org/"
|
||||
SRC_URI="
|
||||
mirror://cran/src/base/R-3/${P}.tar.gz
|
||||
https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
|
||||
|
||||
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
|
||||
SLOT="0"
|
||||
KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux ~x64-macos"
|
||||
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
|
||||
REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
|
||||
|
||||
CDEPEND="
|
||||
app-arch/bzip2:0=
|
||||
app-arch/xz-utils:0=
|
||||
app-text/ghostscript-gpl
|
||||
>=dev-libs/libpcre-8.35:3=
|
||||
net-libs/libtirpc
|
||||
net-misc/curl
|
||||
virtual/blas:0
|
||||
|| ( >=sys-apps/coreutils-8.15 app-misc/realpath )
|
||||
cairo? ( x11-libs/cairo:0=[X=] x11-libs/pango:0= )
|
||||
icu? ( dev-libs/icu:= )
|
||||
jpeg? ( virtual/jpeg:0 )
|
||||
lapack? ( virtual/lapack:0 )
|
||||
perl? ( dev-lang/perl )
|
||||
png? ( media-libs/libpng:0= )
|
||||
readline? ( sys-libs/readline:0= )
|
||||
tiff? ( media-libs/tiff:0= )
|
||||
tk? ( dev-lang/tk:0= )
|
||||
X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
|
||||
|
||||
DEPEND="${CDEPEND}
|
||||
virtual/pkgconfig
|
||||
doc? (
|
||||
virtual/latex-base
|
||||
dev-texlive/texlive-fontsrecommended
|
||||
)"
|
||||
|
||||
RDEPEND="${CDEPEND}
|
||||
>=sys-libs/zlib-1.2.5.1-r2:0[minizip]
|
||||
java? ( >=virtual/jre-1.5 )"
|
||||
|
||||
RESTRICT="minimal? ( test )"
|
||||
|
||||
PATCHES=(
|
||||
"${FILESDIR}"/${PN}-3.4.1-parallel.patch
|
||||
"${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch
|
||||
)
|
||||
|
||||
pkg_pretend() {
|
||||
[[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
|
||||
}
|
||||
|
||||
pkg_setup() {
|
||||
if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
|
||||
if ! tc-check-openmp; then
|
||||
ewarn "OpenMP is not available in your current selected compiler"
|
||||
die "need openmp capable compiler"
|
||||
fi
|
||||
FORTRAN_NEED_OPENMP=1
|
||||
fi
|
||||
fortran-2_pkg_setup
|
||||
filter-ldflags -Wl,-Bdirect -Bdirect
|
||||
# avoid using existing R installation
|
||||
unset R_HOME
|
||||
# Temporary fix for bug #419761
|
||||
if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
|
||||
append-flags -fno-ipa-cp-clone
|
||||
fi
|
||||
}
|
||||
|
||||
src_prepare() {
|
||||
default
|
||||
|
||||
# fix packages.html for doc (gentoo bug #205103)
|
||||
sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
|
||||
-i src/library/tools/R/Rd.R || die
|
||||
|
||||
# fix Rscript path when installed (gentoo bug #221061)
|
||||
sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT}/usr/$(get_libdir)/${PN}\"':" \
|
||||
-i src/unix/Makefile.in || die "sed unix Makefile failed"
|
||||
|
||||
# fix HTML links to manual (gentoo bug #273957)
|
||||
sed -e 's:\.\./manual/:manual/:g' \
|
||||
-i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
|
||||
|
||||
use lapack && \
|
||||
export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
|
||||
|
||||
if use X; then
|
||||
export R_BROWSER="$(type -p xdg-open)"
|
||||
export R_PDFVIEWER="$(type -p xdg-open)"
|
||||
fi
|
||||
use perl && \
|
||||
export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
|
||||
|
||||
# don't search /usr/local
|
||||
sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
|
||||
# Fix for Darwin (OS X)
|
||||
if use prefix; then
|
||||
if [[ ${CHOST} == *-darwin* ]] ; then
|
||||
sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
|
||||
-e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
|
||||
-e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
|
||||
-e "/SHLIB_EXT/s/\.so/.dylib/" \
|
||||
-i configure.ac || die
|
||||
# sort of "undo" 2.14.1-rmath-shared.patch
|
||||
sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT}/usr/$(get_libdir)/libRmath.dylib:" \
|
||||
-i src/nmath/standalone/Makefile.in || die
|
||||
else
|
||||
append-ldflags -Wl,-rpath="${EROOT}/usr/$(get_libdir)/R/lib"
|
||||
fi
|
||||
fi
|
||||
AT_M4DIR=m4
|
||||
eautoreconf
|
||||
}
|
||||
|
||||
src_configure() {
|
||||
# --with-system-tre \
|
||||
# tre is patched from upstream
|
||||
econf \
|
||||
--enable-byte-compiled-packages \
|
||||
--enable-R-shlib \
|
||||
--disable-R-framework \
|
||||
--with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
|
||||
rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
|
||||
$(use_enable java) \
|
||||
$(use_enable nls) \
|
||||
$(use_enable openmp) \
|
||||
$(use_enable profile R-profiling) \
|
||||
$(use_enable profile memory-profiling) \
|
||||
$(use_enable static-libs static) \
|
||||
$(use_enable static-libs R-static-lib) \
|
||||
$(use_with cairo) \
|
||||
$(use_with icu ICU) \
|
||||
$(use_with jpeg jpeglib) \
|
||||
$(use_with lapack) \
|
||||
$(use_with !minimal recommended-packages) \
|
||||
$(use_with png libpng) \
|
||||
$(use_with readline) \
|
||||
$(use_with tiff libtiff) \
|
||||
$(use_with tk tcltk) \
|
||||
$(use_with tk tk-config "${EPREFIX}"/usr/$(get_libdir)/tkConfig.sh) \
|
||||
$(use_with tk tcl-config "${EPREFIX}"/usr/$(get_libdir)/tclConfig.sh) \
|
||||
$(use_with X x)
|
||||
}
|
||||
|
||||
src_compile() {
|
||||
export VARTEXFONTS="${T}/fonts"
|
||||
emake AR="$(tc-getAR)"
|
||||
emake -C src/nmath/standalone \
|
||||
shared $(use static-libs && echo static) AR="$(tc-getAR)"
|
||||
use doc && emake info pdf
|
||||
}
|
||||
|
||||
src_install() {
|
||||
default
|
||||
emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
|
||||
|
||||
if use doc; then
|
||||
emake DESTDIR="${D}" install-info install-pdf
|
||||
dosym ../manual /usr/share/doc/${PF}/html/manual
|
||||
fi
|
||||
|
||||
cat > 99R <<-EOF
|
||||
LDPATH=${EROOT}/usr/$(get_libdir)/${PN}/lib
|
||||
R_HOME=${EROOT}/usr/$(get_libdir)/${PN}
|
||||
EOF
|
||||
doenvd 99R
|
||||
newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
|
||||
# The buildsystem has a different understanding of install_names than
|
||||
# we require. Since it builds modules like shared objects (wrong), many
|
||||
# objects (all modules) get an incorrect install_name. Fixing the build
|
||||
# system here is not really trivial.
|
||||
if [[ ${CHOST} == *-darwin* ]] ; then
|
||||
local mod
|
||||
pushd "${ED}"/usr/$(get_libdir)/R > /dev/null
|
||||
for mod in $(find . -name "*.dylib") ; do
|
||||
mod=${mod#./}
|
||||
install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \
|
||||
"${mod}"
|
||||
done
|
||||
popd > /dev/null
|
||||
fi
|
||||
docompress -x /usr/share/doc/${PF}/{BioC_mirrors.csv,CRAN_mirrors.csv,KEYWORDS.db,NEWS.rds}
|
||||
}
|
||||
|
||||
pkg_postinst() {
|
||||
if use java; then
|
||||
einfo "Re-initializing java paths for ${P}"
|
||||
R CMD javareconf
|
||||
fi
|
||||
}
|
||||
@@ -1,206 +0,0 @@
|
||||
# Copyright 1999-2020 Gentoo Authors
|
||||
# Distributed under the terms of the GNU General Public License v2
|
||||
|
||||
EAPI=7
|
||||
|
||||
inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib toolchain-funcs
|
||||
|
||||
# latest git commit for R bash completion: https://github.com/deepayan/rcompletion
|
||||
BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
|
||||
|
||||
DESCRIPTION="Language and environment for statistical computing and graphics"
|
||||
HOMEPAGE="http://www.r-project.org/"
|
||||
SRC_URI="
|
||||
mirror://cran/src/base/R-3/${P}.tar.gz
|
||||
https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
|
||||
|
||||
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
|
||||
SLOT="0"
|
||||
KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux ~x64-macos"
|
||||
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
|
||||
REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
|
||||
|
||||
CDEPEND="
|
||||
app-arch/bzip2:0=
|
||||
app-arch/xz-utils:0=
|
||||
app-text/ghostscript-gpl
|
||||
dev-libs/libpcre:3=
|
||||
net-libs/libtirpc
|
||||
net-misc/curl
|
||||
virtual/blas:0
|
||||
|| ( sys-apps/coreutils app-misc/realpath )
|
||||
cairo? ( x11-libs/cairo:0=[X=] x11-libs/pango:0= )
|
||||
icu? ( dev-libs/icu:= )
|
||||
jpeg? ( virtual/jpeg:0 )
|
||||
lapack? ( virtual/lapack:0 )
|
||||
perl? ( dev-lang/perl )
|
||||
png? ( media-libs/libpng:0= )
|
||||
readline? ( sys-libs/readline:0= )
|
||||
tiff? ( media-libs/tiff:0= )
|
||||
tk? ( dev-lang/tk:0= )
|
||||
X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
|
||||
|
||||
DEPEND="${CDEPEND}
|
||||
virtual/pkgconfig
|
||||
doc? (
|
||||
virtual/latex-base
|
||||
dev-texlive/texlive-fontsrecommended
|
||||
)"
|
||||
|
||||
RDEPEND="${CDEPEND}
|
||||
sys-libs/zlib:0[minizip]
|
||||
java? ( >=virtual/jre-1.5 )"
|
||||
|
||||
RESTRICT="minimal? ( test )"
|
||||
|
||||
PATCHES=(
|
||||
"${FILESDIR}"/${PN}-3.4.1-parallel.patch
|
||||
"${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch
|
||||
"${FILESDIR}"/${PN}-3.6.2-no-LDFLAGS-in-libR-pkg-config.patch
|
||||
"${FILESDIR}"/${PN}-3.6.2-no-gzip-doc.patch
|
||||
)
|
||||
|
||||
pkg_pretend() {
|
||||
[[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
|
||||
}
|
||||
|
||||
pkg_setup() {
|
||||
if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
|
||||
if ! tc-check-openmp; then
|
||||
ewarn "OpenMP is not available in your current selected compiler"
|
||||
die "need openmp capable compiler"
|
||||
fi
|
||||
FORTRAN_NEED_OPENMP=1
|
||||
fi
|
||||
fortran-2_pkg_setup
|
||||
filter-ldflags -Wl,-Bdirect -Bdirect
|
||||
# avoid using existing R installation
|
||||
unset R_HOME
|
||||
# Temporary fix for bug #419761
|
||||
if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
|
||||
append-flags -fno-ipa-cp-clone
|
||||
fi
|
||||
}
|
||||
|
||||
src_prepare() {
|
||||
default
|
||||
|
||||
# fix packages.html for doc (gentoo bug #205103)
|
||||
sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
|
||||
-i src/library/tools/R/Rd.R || die
|
||||
|
||||
# fix Rscript path when installed (gentoo bug #221061)
|
||||
sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT}/usr/$(get_libdir)/${PN}\"':" \
|
||||
-i src/unix/Makefile.in || die "sed unix Makefile failed"
|
||||
|
||||
# fix HTML links to manual (gentoo bug #273957)
|
||||
sed -e 's:\.\./manual/:manual/:g' \
|
||||
-i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
|
||||
|
||||
use lapack && \
|
||||
export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
|
||||
|
||||
if use X; then
|
||||
export R_BROWSER="$(type -p xdg-open)"
|
||||
export R_PDFVIEWER="$(type -p xdg-open)"
|
||||
fi
|
||||
use perl && \
|
||||
export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
|
||||
|
||||
# don't search /usr/local
|
||||
sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
|
||||
# Fix for Darwin (OS X)
|
||||
if use prefix; then
|
||||
if [[ ${CHOST} == *-darwin* ]] ; then
|
||||
sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
|
||||
-e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
|
||||
-e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
|
||||
-e "/SHLIB_EXT/s/\.so/.dylib/" \
|
||||
-i configure.ac || die
|
||||
# sort of "undo" 2.14.1-rmath-shared.patch
|
||||
sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT}/usr/$(get_libdir)/libRmath.dylib:" \
|
||||
-i src/nmath/standalone/Makefile.in || die
|
||||
else
|
||||
append-ldflags -Wl,-rpath="${EROOT}/usr/$(get_libdir)/R/lib"
|
||||
fi
|
||||
fi
|
||||
AT_M4DIR=m4
|
||||
eautoreconf
|
||||
}
|
||||
|
||||
src_configure() {
|
||||
# --with-system-tre \
|
||||
# tre is patched from upstream
|
||||
econf \
|
||||
--enable-byte-compiled-packages \
|
||||
--enable-R-shlib \
|
||||
--disable-R-framework \
|
||||
--with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
|
||||
rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
|
||||
$(use_enable java) \
|
||||
$(use_enable nls) \
|
||||
$(use_enable openmp) \
|
||||
$(use_enable profile R-profiling) \
|
||||
$(use_enable profile memory-profiling) \
|
||||
$(use_enable static-libs static) \
|
||||
$(use_enable static-libs R-static-lib) \
|
||||
$(use_with cairo) \
|
||||
$(use_with icu ICU) \
|
||||
$(use_with jpeg jpeglib) \
|
||||
$(use_with lapack) \
|
||||
$(use_with !minimal recommended-packages) \
|
||||
$(use_with png libpng) \
|
||||
$(use_with readline) \
|
||||
$(use_with tiff libtiff) \
|
||||
$(use_with tk tcltk) \
|
||||
$(use_with tk tk-config "${EPREFIX}"/usr/$(get_libdir)/tkConfig.sh) \
|
||||
$(use_with tk tcl-config "${EPREFIX}"/usr/$(get_libdir)/tclConfig.sh) \
|
||||
$(use_with X x)
|
||||
}
|
||||
|
||||
src_compile() {
|
||||
export VARTEXFONTS="${T}/fonts"
|
||||
emake AR="$(tc-getAR)"
|
||||
emake -C src/nmath/standalone \
|
||||
shared $(use static-libs && echo static) AR="$(tc-getAR)"
|
||||
use doc && emake info pdf
|
||||
}
|
||||
|
||||
src_install() {
|
||||
default
|
||||
emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
|
||||
|
||||
if use doc; then
|
||||
emake DESTDIR="${D}" install-info install-pdf
|
||||
dosym ../manual /usr/share/doc/${PF}/html/manual
|
||||
fi
|
||||
|
||||
cat > 99R <<-EOF
|
||||
LDPATH=${EROOT}/usr/$(get_libdir)/${PN}/lib
|
||||
R_HOME=${EROOT}/usr/$(get_libdir)/${PN}
|
||||
EOF
|
||||
doenvd 99R
|
||||
newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
|
||||
# The buildsystem has a different understanding of install_names than
|
||||
# we require. Since it builds modules like shared objects (wrong), many
|
||||
# objects (all modules) get an incorrect install_name. Fixing the build
|
||||
# system here is not really trivial.
|
||||
if [[ ${CHOST} == *-darwin* ]] ; then
|
||||
local mod
|
||||
pushd "${ED}"/usr/$(get_libdir)/R > /dev/null
|
||||
for mod in $(find . -name "*.dylib") ; do
|
||||
mod=${mod#./}
|
||||
install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \
|
||||
"${mod}"
|
||||
done
|
||||
popd > /dev/null
|
||||
fi
|
||||
docompress -x /usr/share/doc/${PF}/{BioC_mirrors.csv,CRAN_mirrors.csv,KEYWORDS.db,NEWS.rds}
|
||||
}
|
||||
|
||||
pkg_postinst() {
|
||||
if use java; then
|
||||
einfo "Re-initializing java paths for ${P}"
|
||||
R CMD javareconf
|
||||
fi
|
||||
}
|
||||
Reference in New Issue
Block a user