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https://github.com/gentoo-mirror/gentoo.git
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sci-libs/hdf5: Drop 1.8.18 and 1.10.1
Package-Manager: Portage-2.3.67, Repoman-2.3.14 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
This commit is contained in:
Andreas Sturmlechner
@@ -1,3 +1 @@
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DIST hdf5-1.10.1.tar.bz2 11769617 BLAKE2B 66ad762aed90cea9e58a9735bf0e189d78befc40cac0e566586e967f2b3ba6f5bf8a6bfd12a2f4062f8b20900c16d467c34134c17dedfd8f345cb96bd853a2fe SHA512 266b0e2f28c5fd540099a4955244ddb8c03aca3ad40d626358643f033a6ae5e9266a1d6c1d60925c7d42d24d28a1549d3305fe8ddb42cec2379af7231b93e554
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DIST hdf5-1.10.5.tar.bz2 8706317 BLAKE2B ac326be8fe4ccc4b0153f15bc7d65aa8f1adc2ae279d3980f57ed46722b754d3f36ecf1d6273c75e80ed1afd4bbf10c6b1c5d9408e1f83a4b2e397e7902a7d3c SHA512 769e43b8672e26fe24ed68da0228c010d3d9bc950ca09f0bc60707911a2f26f2f8415c8abc8ec06e07667148d8cdb3b0c7b3e7860d9b19739629c5dfd5ce73d4
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DIST hdf5-1.8.18.tar.bz2 10081294 BLAKE2B cf0d0c8a41576bcf816460eaabcfab29cfffba240721a64fe584c42fbb322470f29fb93c8513f7bbdedeeb392c2fe64cd3261b47b47de5b01828dae0b1929cd3 SHA512 01f6d14bdd3be2ced9c63cc9e1820cd7ea11db649ff9f3a3055c18c4b0fffe777fd23baad536e3bce31c4d76fe17db64a3972762e1bb4d232927c1ca140e72b2
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@@ -1,43 +0,0 @@
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--- a/hl/src/H5LTanalyze.c
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+++ b/hl/src/H5LTanalyze.c
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@@ -40,6 +40,7 @@
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#include <string.h>
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#include <errno.h>
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#include <stdlib.h>
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+#include <unistd.h>
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/* end standard C headers. */
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--- a/hl/src/H5LTanalyze.l
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+++ b/hl/src/H5LTanalyze.l
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@@ -16,6 +16,7 @@
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%{
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#include <stdlib.h>
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#include <string.h>
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+#include <unistd.h>
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#include <hdf5.h>
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#include "H5LTparse.h"
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--- a/test/cache_common.h
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+++ b/test/cache_common.h
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@@ -702,5 +702,8 @@ void validate_mdc_config(hid_t file_id,
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hbool_t compare_init,
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int test_num);
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+hbool_t resize_configs_are_equal(const H5C_auto_size_ctl_t *a,
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+ const H5C_auto_size_ctl_t *b,
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+ hbool_t compare_init);
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#endif /* _CACHE_COMMON_H */
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--- a/testpar/t_span_tree.c
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+++ b/testpar/t_span_tree.c
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@@ -37,6 +37,9 @@
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#include "hdf5.h"
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#include "H5private.h"
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#include "testphdf5.h"
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+#define H5S_PACKAGE
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+#define H5S_TESTING
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+#include "H5Spkg.h"
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static void coll_write_test(int chunk_factor);
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@@ -1,95 +0,0 @@
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# Copyright 1999-2017 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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EAPI=5
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FORTRAN_NEEDED=fortran
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AUTOTOOLS_AUTORECONF=1
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inherit autotools-utils eutils fortran-2 flag-o-matic toolchain-funcs multilib versionator prefix
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MY_P=${PN}-${PV/_p/-patch}
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MAJOR_P=${PN}-$(get_version_component_range 1-2 ${PV})
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DESCRIPTION="General purpose library and file format for storing scientific data"
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HOMEPAGE="http://www.hdfgroup.org/HDF5/"
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SRC_URI="http://www.hdfgroup.org/ftp/HDF5/releases/${MAJOR_P}/${MY_P}/src/${MY_P}.tar.bz2"
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LICENSE="NCSA-HDF"
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SLOT="0/${PV%%_p*}"
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KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux"
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IUSE="cxx debug examples fortran +hl mpi static-libs szip threads zlib"
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REQUIRED_USE="
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cxx? ( !mpi ) mpi? ( !cxx )
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threads? ( !cxx !mpi !fortran !hl )"
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RDEPEND="
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mpi? ( virtual/mpi[romio] )
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szip? ( virtual/szip )
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zlib? ( sys-libs/zlib:0= )"
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DEPEND="${RDEPEND}
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sys-devel/libtool:2
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>=sys-devel/autoconf-2.69"
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S="${WORKDIR}/${MY_P}"
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PATCHES=(
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"${FILESDIR}"/${PN}-1.8.9-static_libgfortran.patch
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"${FILESDIR}"/${PN}-1.8.9-mpicxx.patch
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"${FILESDIR}"/${PN}-1.8.13-no-messing-ldpath.patch
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)
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pkg_setup() {
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tc-export CXX CC AR # workaround for bug 285148
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use fortran && fortran-2_pkg_setup
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if use mpi; then
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if has_version 'sci-libs/hdf5[-mpi]'; then
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ewarn "Installing hdf5 with mpi enabled with a previous hdf5 with mpi disabled may fail."
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ewarn "Try to uninstall the current hdf5 prior to enabling mpi support."
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fi
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export CC=mpicc
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use fortran && export FC=mpif90
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elif has_version 'sci-libs/hdf5[mpi]'; then
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ewarn "Installing hdf5 with mpi disabled while having hdf5 installed with mpi enabled may fail."
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ewarn "Try to uninstall the current hdf5 prior to disabling mpi support."
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fi
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}
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src_prepare() {
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# respect gentoo examples directory
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sed \
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-e "s:hdf5_examples:doc/${PF}/examples:g" \
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-i $(find . -name Makefile.am) $(find . -name "run*.sh.in") || die
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sed \
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-e '/docdir/d' \
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-i config/commence.am || die
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if ! use examples; then
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sed -e '/^install:/ s/install-examples//' \
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-i Makefile.am || die #409091
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fi
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# enable shared libs by default for h5cc config utility
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sed -i -e "s/SHLIB:-no/SHLIB:-yes/g" tools/src/misc/h5cc.in || die
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hprefixify m4/libtool.m4
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autotools-utils_src_prepare
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}
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src_configure() {
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local myeconfargs=(
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--docdir="${EPREFIX}"/usr/share/doc/${PF}
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--enable-deprecated-symbols
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$(use debug && echo --enable-build-mode=debug || echo --enable-build-mode=production)
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$(use_enable debug codestack)
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$(use_enable cxx)
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$(use_enable fortran)
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$(use_enable hl)
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$(use_enable mpi parallel)
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$(use_enable threads threadsafe)
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$(use_with szip szlib)
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$(use_with threads pthread)
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$(use_with zlib)
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)
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autotools-utils_src_configure
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}
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@@ -1,111 +0,0 @@
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# Copyright 1999-2017 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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EAPI=5
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FORTRAN_NEEDED=fortran
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AUTOTOOLS_AUTORECONF=1
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inherit autotools-utils eutils fortran-2 flag-o-matic toolchain-funcs multilib
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MY_P=${PN}-${PV/_p/-patch}
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DESCRIPTION="General purpose library and file format for storing scientific data"
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HOMEPAGE="http://www.hdfgroup.org/HDF5/"
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#SRC_URI="https://support.hdfgroup.org/ftp/HDF5/releases/${MY_P}/src/${MY_P}.tar.bz2"
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# TODO: return to proper SRC_URI once upstream fixes their release
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SRC_URI="https://support.hdfgroup.org/ftp/HDF5/current18/src/${MY_P}.tar.bz2"
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LICENSE="NCSA-HDF"
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SLOT="0/${PV%%_p*}"
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KEYWORDS="alpha amd64 ~arm ~arm64 ia64 ppc ppc64 sparc x86 ~x86-fbsd ~amd64-linux ~x86-linux"
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IUSE="cxx debug examples fortran fortran2003 +hl mpi static-libs szip threads zlib"
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REQUIRED_USE="
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threads? ( !cxx !mpi !fortran !hl )
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fortran2003? ( fortran )"
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RDEPEND="
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mpi? ( virtual/mpi[romio] )
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szip? ( virtual/szip )
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zlib? ( sys-libs/zlib:0= )"
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DEPEND="${RDEPEND}
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sys-devel/libtool:2
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>=sys-devel/autoconf-2.69"
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S="${WORKDIR}/${MY_P}"
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PATCHES=(
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"${FILESDIR}"/${PN}-1.8.9-static_libgfortran.patch
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"${FILESDIR}"/${PN}-1.8.9-mpicxx.patch
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"${FILESDIR}"/${PN}-1.8.13-no-messing-ldpath.patch
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"${FILESDIR}"/${PN}-1.8.15-implicits.patch
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)
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pkg_setup() {
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tc-export CXX CC AR # workaround for bug 285148
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if use fortran; then
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use fortran2003 && FORTRAN_STANDARD=2003
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fortran-2_pkg_setup
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fi
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if use mpi; then
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if has_version 'sci-libs/hdf5[-mpi]'; then
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ewarn "Installing hdf5 with mpi enabled with a previous hdf5 with mpi disabled may fail."
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ewarn "Try to uninstall the current hdf5 prior to enabling mpi support."
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fi
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export CC=mpicc
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use fortran && export FC=mpif90
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if use cxx ; then
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export CXX=mpicxx
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ewarn "USE='mpi cxx' requires a configuration unsupported by upstream. Use at your own risk."
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ewarn "In particular, the C++ API is not parallel safe."
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fi
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elif has_version 'sci-libs/hdf5[mpi]'; then
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ewarn "Installing hdf5 with mpi disabled while having hdf5 installed with mpi enabled may fail."
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ewarn "Try to uninstall the current hdf5 prior to disabling mpi support."
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fi
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}
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src_prepare() {
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# respect gentoo examples directory
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sed \
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-e "s:hdf5_examples:doc/${PF}/examples:g" \
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-i $(find . -name Makefile.am) $(find . -name "run*.sh.in") || die
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sed \
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-e '/docdir/d' \
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-i config/commence.am || die
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if ! use examples; then
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sed -e '/^install:/ s/install-examples//' \
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-i Makefile.am || die #409091
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fi
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# enable shared libs by default for h5cc config utility
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sed -i -e "s/SHLIB:-no/SHLIB:-yes/g" tools/misc/h5cc.in || die
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# bug #419677
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use prefix && \
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append-ldflags -Wl,-rpath,"${EPREFIX}"/usr/$(get_libdir) \
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-Wl,-rpath,"${EPREFIX}"/$(get_libdir)
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autotools-utils_src_prepare
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}
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src_configure() {
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local myeconfargs=(
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--enable-production
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--docdir="${EPREFIX}"/usr/share/doc/${PF}
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--enable-deprecated-symbols
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$(use_enable prefix sharedlib-rpath)
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$(use_enable debug debug all)
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$(use_enable debug codestack)
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$(use_enable cxx)
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$(use_enable fortran)
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$(use_enable fortran2003)
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$(use_enable hl)
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$(use_enable mpi parallel)
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$(use_enable threads threadsafe)
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$(use_with szip szlib)
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$(use_with threads pthread)
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$(use_with zlib)
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$(use mpi && use cxx && echo --enable-unsupported)
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)
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autotools-utils_src_configure
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}
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@@ -12,9 +12,6 @@
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than 2 GB, and supports parallel I/O.
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</longdescription>
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<use>
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<flag name="fortran2003">Enable new features that require Fortran 2003
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(http://www.hdfgroup.org/HDF5/doc/fortran/NewFeatures_F2003.pdf)</flag>
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<flag name="hl">Enable high level API
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(https://support.hdfgroup.org/HDF5/doc/HL/index.html)</flag>
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<flag name="hl">Enable high level API (https://support.hdfgroup.org/HDF5/doc/HL/index.html)</flag>
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</use>
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</pkgmetadata>
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