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dev-python/scipy: Enable py3.14
Signed-off-by: Michał Górny <mgorny@gentoo.org>
This commit is contained in:
Michał Górny
183
dev-python/scipy/scipy-1.16.2-r2.ebuild
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183
dev-python/scipy/scipy-1.16.2-r2.ebuild
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@@ -0,0 +1,183 @@
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# Copyright 1999-2025 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=8
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FORTRAN_NEEDED=fortran
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DISTUTILS_EXT=1
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DISTUTILS_USE_PEP517=meson-python
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PYTHON_COMPAT=( pypy3_11 python3_{11..14} )
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PYTHON_REQ_USE="threads(+)"
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inherit flag-o-matic fortran-2 distutils-r1
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DESCRIPTION="Scientific algorithms library for Python"
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HOMEPAGE="
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https://scipy.org/
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https://github.com/scipy/scipy/
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https://pypi.org/project/scipy/
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"
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if [[ ${PV} == *9999* ]] ; then
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inherit git-r3
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# Need submodules, so git for now.
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EGIT_REPO_URI="https://github.com/scipy/scipy"
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EGIT_BRANCH="maintenance/$(ver_cut 1-2).x"
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EGIT_SUBMODULES=( '*' )
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else
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inherit pypi
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# Upstream is often behind with doc updates
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DOC_PV=${PV}
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SRC_URI+="
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doc? (
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https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${DOC_PV}.zip
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)
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"
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if [[ ${PV} != *rc* ]] ; then
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KEYWORDS="~amd64 ~arm ~arm64 ~loong ~ppc ~ppc64 ~riscv ~s390 ~sparc ~x86"
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fi
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fi
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LICENSE="BSD LGPL-2"
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SLOT="0"
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IUSE="doc +fortran test-rust"
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# pythran is needed in both BDEPEND (for /usr/bin/pythran) and in DEPEND
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# to actually compile code generated by pythran (headers and such needed).
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#
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# umfpack is technically optional but it's preferred to have it available.
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COMMON_DEPEND="
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>=dev-python/numpy-1.23.5:=[lapack,${PYTHON_USEDEP}]
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>=media-libs/qhull-2020.2:=
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virtual/cblas
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>=virtual/lapack-3.8
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"
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# Only boost.math is used, and meson.build doesn't even look up specific boost modules.
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DEPEND="
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${COMMON_DEPEND}
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>=dev-libs/boost-1.88.0
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"
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RDEPEND="
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${COMMON_DEPEND}
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dev-python/pillow[${PYTHON_USEDEP}]
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"
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DEPEND+="
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fortran? (
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>=dev-python/pythran-0.16.0[${PYTHON_USEDEP}]
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)
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"
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BDEPEND="
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dev-lang/swig
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>=dev-python/cython-3.0.8[${PYTHON_USEDEP}]
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>=dev-python/meson-python-0.15.0[${PYTHON_USEDEP}]
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>=dev-python/pybind11-2.13.2[${PYTHON_USEDEP}]
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>=dev-python/pytest-8.0.0[${PYTHON_USEDEP}]
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>=dev-build/meson-1.5.0
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!kernel_Darwin? ( dev-util/patchelf )
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virtual/pkgconfig
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doc? ( app-arch/unzip )
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fortran? (
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>=dev-python/pythran-0.16.0[${PYTHON_USEDEP}]
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)
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test-rust? (
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dev-python/pooch[${PYTHON_USEDEP}]
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)
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"
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EPYTEST_PLUGINS=( hypothesis )
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EPYTEST_XDIST=1
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distutils_enable_tests pytest
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src_unpack() {
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default
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if use doc; then
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unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die
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fi
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}
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src_prepare() {
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distutils-r1_src_prepare
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# unpin system dependencies
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sed -i -e "s@version : '@&>=@" meson.build || die
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}
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python_configure_all() {
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DISTUTILS_ARGS=(
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-Dblas=blas
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-Dlapack=lapack
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-Duse-pythran=$(usex fortran true false)
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-Duse-system-libraries=all
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)
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# https://bugs.gentoo.org/932721
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has_version '>=dev-python/numpy-2.0.0' && filter-lto
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}
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python_test() {
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# We run tests in parallel, so avoid having n^2 threads in lapack
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# tests.
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local -x BLIS_NUM_THREADS=1
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local -x MKL_NUM_THREADS=1
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local -x OMP_NUM_THREADS=1
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local -x OPENBLAS_NUM_THREADS=1
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cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
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local EPYTEST_DESELECT=(
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# Network
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scipy/datasets/tests/test_data.py::TestDatasets::test_existence_all
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scipy/datasets/tests/test_data.py::TestDatasets::test_ascent
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scipy/datasets/tests/test_data.py::TestDatasets::test_face
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scipy/datasets/tests/test_data.py::TestDatasets::test_electrocardiogram
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# Crashes with assertion, not a regression
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# https://github.com/scipy/scipy/issues/19321
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scipy/signal/tests/test_signaltools.py::test_lfilter_bad_object
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# Awfully slow tests
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scipy/interpolate/tests/test_bsplines.py::TestBatch::test_batch
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scipy/linalg/tests/test_basic.py::TestLstsq::test_random_complex_exact
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scipy/sparse/linalg/_eigen/tests/test_svds.py::test_small_sigma_sparse
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# TODO: minor precision errors
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'scipy/linalg/tests/test_batch.py::TestBatch::test_solve[float32-bdim2]'
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'scipy/linalg/tests/test_batch.py::TestBatch::test_lu_solve[float32-bdim2]'
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'scipy/stats/tests/test_continuous.py::TestDistributions::test_funcs[cdf-methods11-x-Normal]['
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# Crashes, probably too big
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'scipy/interpolate/tests/test_fitpack2.py::TestRectBivariateSpline::test_spline_large_2d_maxit'
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)
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local EPYTEST_IGNORE=()
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if ! has_version -b "dev-python/pooch[${PYTHON_USEDEP}]" ; then
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EPYTEST_IGNORE+=(
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scipy/datasets/tests/test_data.py
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)
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fi
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case ${EPYTHON} in
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pypy3*)
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EPYTEST_DESELECT+=(
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# TODO
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scipy/special/tests/test_data.py::test_boost
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scipy/_lib/tests/test_ccallback.py::test_callbacks
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)
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;;
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esac
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# avoid other stuff being multithreaded when using xdist
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local -x PYTHON_CPU_COUNT=1
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epytest scipy
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}
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python_install_all() {
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use doc && local HTML_DOCS=( "${WORKDIR}"/html/. )
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distutils-r1_python_install_all
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}
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