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dev-lang/R: bump to 3.2.5
This commit is contained in:
Denis Dupeyron
@@ -2,3 +2,4 @@ DIST R-20130129.bash_completion.bz2 4209 SHA256 487e969b94563fec98ec58de7e6142e9
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DIST R-3.2.2.tar.gz 29772864 SHA256 9c9152e74134b68b0f3a1c7083764adc1cb56fd8336bec003fd0ca550cd2461d SHA512 71ba470875262b9f00fb6970f209788df4dad30e0a28373b824b60d8bc6401afb7786e65387663c6490c7ddcd2bfd7f808a270a3e63238f3d7565d5f93607138 WHIRLPOOL fea59929ada1d67dafc6ad89409d18ad173af7990384033f490a00e0f794d9919aecf7cd37089d105fe03b9cf64d079e5d148622571cec3eb924c1c5bd00081e
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DIST R-3.2.3.tar.gz 29816176 SHA256 b93b7d878138279234160f007cb9b7f81b8a72c012a15566e9ec5395cfd9b6c1 SHA512 9d7294af860204f4d84e25eb503111c9607beedbc42f01de073c915945a6342c3e24e25a9cc038a2e58442036bee931975d93dc327081ed02afe5ffa365170ea WHIRLPOOL 31ecbaa5c4340e02551eefe17f7f2e9ae075778e7b568a2c477b9f31f1b9598380edb8cb53c713df6643d2cba62ea97c6f225490ade2fc8a9e2b4d88426c7883
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DIST R-3.2.4.tar.gz 29879523 SHA256 bafd405fe9c2fe3bbe47a8a7730ad120f03b7df9fb0f61674fca19cf061dd350 SHA512 a74f01a9b47437feb81520c10936a6f2bc7700900730ec87b7f1442ee90bcf1d7aac9ef3345aa046c0566f1920f114da0a616c5f355b1e8480dc01e311476cbf WHIRLPOOL 0277c372baaf6c50c403c03b8fef04e80e8690efad875c26a03283a4f4d32e53610091695922a57a2f8bee4ac1a568b36f1fbf929bf61d11298b81907a3aaac6
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DIST R-3.2.5.tar.gz 29876312 SHA256 60745672dce5ddc201806fa59f6d4e0ba6554d8ed78d0f9f0d79a629978f80b5 SHA512 aff7efa84188dfdd486d48095fadb9fbe1ab5897f9f924b9956d21d955d7cba9e50c1d21af6cca8327af8d1465b10761526a3a3be357c08a536831e7f5fc290b WHIRLPOOL 48b232bac4df9d562253fac3527c5786a6b45b3adeb5e91ad586549254ae1a2b53f0d39bc746cfd6d86094201f9d8e29617a9678780c7c58365f484f679fc7e0
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206
dev-lang/R/R-3.2.5.ebuild
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206
dev-lang/R/R-3.2.5.ebuild
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@@ -0,0 +1,206 @@
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# Copyright 1999-2016 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Id$
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EAPI=5
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inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs
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BCP=${PN}-20130129.bash_completion
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DESCRIPTION="Language and environment for statistical computing and graphics"
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HOMEPAGE="http://www.r-project.org/"
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SRC_URI="
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mirror://cran/src/base/R-3/${P}.tar.gz
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https://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2"
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LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
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SLOT="0"
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KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
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IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
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REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
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CDEPEND="
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app-arch/bzip2:0=
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app-arch/xz-utils:0=
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app-text/ghostscript-gpl
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>=dev-libs/libpcre-8.35:3=
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virtual/blas:0
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|| ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath )
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cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= )
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icu? ( dev-libs/icu:= )
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jpeg? ( virtual/jpeg:0 )
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lapack? ( virtual/lapack:0 )
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perl? ( dev-lang/perl )
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png? ( media-libs/libpng:0= )
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readline? ( sys-libs/readline:0= )
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tiff? ( media-libs/tiff:0= )
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tk? ( dev-lang/tk:0= )
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X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
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DEPEND="${CDEPEND}
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virtual/pkgconfig
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doc? (
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virtual/latex-base
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dev-texlive/texlive-fontsrecommended
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)"
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RDEPEND="${CDEPEND}
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>=sys-libs/zlib-1.2.5.1-r2:0[minizip]
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java? ( >=virtual/jre-1.5 )"
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RESTRICT="minimal? ( test )"
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R_DIR="${EROOT%/}/usr/$(get_libdir)/${PN}"
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pkg_setup() {
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if use openmp; then
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if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then
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ewarn "OpenMP is not available in your current selected gcc"
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die "need openmp capable gcc"
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fi
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FORTRAN_NEED_OPENMP=1
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fi
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fortran-2_pkg_setup
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filter-ldflags -Wl,-Bdirect -Bdirect
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# avoid using existing R installation
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unset R_HOME
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# Temporary fix for bug #419761
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if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
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append-flags -fno-ipa-cp-clone
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fi
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}
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src_prepare() {
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epatch \
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"${FILESDIR}"/${PN}-2.11.1-parallel.patch \
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"${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch \
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"${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch
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# fix packages.html for doc (gentoo bug #205103)
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sed -i \
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-e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
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src/library/tools/R/Rd.R || die
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# fix Rscript path when installed (gentoo bug #221061)
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sed -i \
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-e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${R_DIR}\"':" \
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src/unix/Makefile.in || die "sed unix Makefile failed"
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# fix HTML links to manual (gentoo bug #273957)
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sed -i \
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-e 's:\.\./manual/:manual/:g' \
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$(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
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use lapack && \
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export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
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if use X; then
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export R_BROWSER="$(type -p xdg-open)"
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export R_PDFVIEWER="$(type -p xdg-open)"
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fi
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use perl && \
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export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
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# don't search /usr/local
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sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
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# Fix for Darwin (OS X)
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if use prefix; then
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if [[ ${CHOST} == *-darwin* ]] ; then
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sed -i \
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-e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
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-e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
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-e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
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-e "/SHLIB_EXT/s/\.so/.dylib/" \
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configure.ac || die
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# sort of "undo" 2.14.1-rmath-shared.patch
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sed -i \
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-e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \
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src/nmath/standalone/Makefile.in || die
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else
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append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib"
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fi
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fi
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AT_M4DIR=m4 eaclocal
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eautoconf
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}
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src_configure() {
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# --with-system-tre \
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# tre is patched from upstream
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econf \
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--enable-byte-compiled-packages \
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--enable-R-shlib \
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--disable-R-framework \
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--with-system-zlib \
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--with-system-bzlib \
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--with-system-pcre \
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--with-system-xz \
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--with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
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--docdir="${EPREFIX}/usr/share/doc/${PF}" \
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rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
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$(use_enable nls) \
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$(use_enable openmp) \
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$(use_enable profile R-profiling) \
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$(use_enable profile memory-profiling) \
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$(use_enable static-libs static) \
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$(use_enable static-libs R-static-lib) \
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$(use_with cairo) \
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$(use_with icu ICU) \
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$(use_with jpeg jpeglib) \
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$(use_with lapack) \
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$(use_with !minimal recommended-packages) \
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$(use_with png libpng) \
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$(use_with readline) \
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$(use_with tiff libtiff) \
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$(use_with tk tcltk) \
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$(use_with tk tk-config "${EPREFIX}"/usr/lib/tkConfig.sh) \
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$(use_with tk tcl-config "${EPREFIX}"/usr/lib/tclConfig.sh) \
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$(use_with X x)
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}
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src_compile() {
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export VARTEXFONTS="${T}/fonts"
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emake AR="$(tc-getAR)"
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emake -C src/nmath/standalone \
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shared $(use static-libs && echo static) AR="$(tc-getAR)"
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use doc && emake info pdf
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}
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src_install() {
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default
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emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
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if use doc; then
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emake DESTDIR="${D}" install-info install-pdf
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dosym ../manual /usr/share/doc/${PF}/html/manual
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fi
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cat > 99R <<-EOF
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LDPATH=${R_DIR}/lib
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R_HOME=${R_DIR}
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EOF
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doenvd 99R
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newbashcomp "${WORKDIR}"/${BCP} ${PN}
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# The buildsystem has a different understanding of install_names than
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# we require. Since it builds modules like shared objects (wrong), many
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# objects (all modules) get an incorrect install_name. Fixing the build
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# system here is not really trivial.
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if [[ ${CHOST} == *-darwin* ]] ; then
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local mod
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pushd "${ED}"/usr/lib/R > /dev/null
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for mod in $(find . -name "*.dylib") ; do
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mod=${mod#./}
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install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \
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"${mod}"
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done
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popd > /dev/null
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fi
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docompress -x /usr/share/doc/${PF}/NEWS.rds
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}
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pkg_postinst() {
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if use java; then
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einfo "Re-initializing java paths for ${P}"
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R CMD javareconf
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fi
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}
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