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sci-biology/readseq: Remove dead package, see bug #550148

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This commit is contained in:
James Le Cuirot
2016-04-03 22:40:33 +01:00
parent 98f2826b5f
commit c07656a5f7
5 changed files with 0 additions and 108 deletions
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2
sci-biology/readseq/Manifest
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DIST readseq-20100513.zip 628406 SHA256 878b689828bdf59a73c377c314fe504b9f18569ed5cd512acdb264cf90e72601 SHA512 6e2a2207e3a1f14e5cc4f7ffd2c74563b6deb088dda02727611359a17e1b157d9c661715d1f896d1573786cb88f61d3b952ab7a53e6dc30f2dcbcead58604b32 WHIRLPOOL 6f5b7ff075a081f521971689d014ad3ea6ffdc50db1b24766712d21fb86f83d7767f9afa76473f0be6f36560c8572c7051337cde8020cb9562dfef96a2bfdc8a
DIST readseq-source-20080420.zip 627341 SHA256 d91ccadcbf5fde29525c639ece6ae132e0db863a7e63f96f69647e591617e8dd SHA512 cbc7afa46d2f0cfb30aa75ab88e4942a18ddf46a03a4cfb8d7e07bd23bce3fe015483899d371b947a0f1d6ec464b8c1238df7f7fc89753bb75dbb284f1e07b48 WHIRLPOOL fb180c53cb0555887d5278871498d66840d1d27da47ef6a947f0cd048bfb79762faf9493a645be6909bf41c5627131f3ced8d29b8241372d1e6034dc7524004d

14
sci-biology/readseq/files/20080420-no-bundling.patch
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diff --git a/build.xml b/build.xml
index e3d723c..4b44d6f 100644
--- a/build.xml
+++ b/build.xml
@@ -229,9 +229,6 @@
<!-- for now, unjar xml classes into build/classes and rejar in readseq.jar -->
- <unjar overwrite="false" src="${orgxml.jar}" dest="${build.home}/classes" />
- <unjar overwrite="false" src="${xml.jar}" dest="${build.home}/classes" />
-
<!-- <copy todir="${build.home}/classes""> -->
<!-- <src dir="${basedir}/META-INF"/> -->
<!-- </copy> -->

12
sci-biology/readseq/metadata.xml
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<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<maintainer type="project">
<email>sci-biology@gentoo.org</email>
<name>Gentoo Biology Project</name>
</maintainer>
<longdescription>
Reads and writes nucleic/protein sequences in various formats. Data
files may have multiple sequences.
</longdescription>
</pkgmetadata>

42
sci-biology/readseq/readseq-20080420-r1.ebuild
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# Copyright 1999-2014 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=5
inherit java-pkg-2 java-ant-2
MY_P="${PN}-source-${PV}"
DESCRIPTION="Reads and writes nucleic/protein sequences in various formats"
HOMEPAGE="http://iubio.bio.indiana.edu/soft/molbio/readseq/"
# Originally unversioned at
# http://iubio.bio.indiana.edu/soft/molbio/readseq/java/readseq-source.zip.
# Renamed to the date of the modification and mirrored
SRC_URI="https://dev.gentoo.org/~dberkholz/distfiles/${MY_P}.zip"
LICENSE="public-domain"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""
RDEPEND="!=sci-biology/meme-4.8.1
>=virtual/jre-1.4"
DEPEND=">=virtual/jdk-1.4
app-arch/unzip"
S=${WORKDIR}
java_prepare() {
rm "${S}"/lib/* || die
epatch "${FILESDIR}"/${PV}-*
}
src_install() {
java-pkg_dojar build/readseq.jar
java-pkg_dolauncher
}
pkg_postinst() {
elog "Documentation is available at"
elog "http://iubio.bio.indiana.edu/soft/molbio/readseq/java/Readseq2-help.html"
}

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sci-biology/readseq/readseq-20100513.ebuild
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# Copyright 1999-2014 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=5
inherit java-pkg-2 java-ant-2
DESCRIPTION="Reads and writes nucleic/protein sequences in various formats"
HOMEPAGE="http://iubio.bio.indiana.edu/soft/molbio/readseq/"
SRC_URI="https://dev.gentoo.org/~ercpe/distfiles/${CATEGORY}/${PN}/${P}.zip"
LICENSE="public-domain"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""
RDEPEND="!=sci-biology/meme-4.8.1
>=virtual/jre-1.4"
DEPEND=">=virtual/jdk-1.4
app-arch/unzip"
S=${WORKDIR}
java_prepare() {
rm "${S}"/lib/* || die
epatch "${FILESDIR}"/20080420-*
}
src_install() {
java-pkg_dojar build/readseq.jar
java-pkg_dolauncher
}
pkg_postinst() {
elog "Documentation is available at"
elog "http://iubio.bio.indiana.edu/soft/molbio/readseq/java/Readseq2-help.html"
}