sci-mathematics/bertini: bump to 1.6

Signed-off-by: Maciej Barć <xgqt@gentoo.org>

sci-mathematics/bertini/Manifest

@@ -1 +1,3 @@
 DIST BertiniSource_v1.4.tar.gz 1827401 BLAKE2B 4869ef0b73a3688df504bff84dc36682700c4916dcfdca68ae3a1bf87ceda2f664c35e2b5fe4b5d0859bbab110a2fa1e474361847db897859c3d5d17c48f122f SHA512 bb53f8ed24a0f21e95b4e373be36039b69ea0ddb11ad8240bcf52ce64436a56c1f2057a5d733d017fdf68cfb3598a473e1f12b4659308890e2e2575b7d8143f6
+DIST BertiniSource_v1.6.tar.gz 4957384 BLAKE2B 395ca96c52b167eaefe672d31c79c5791d92b1375059c0e6244042f2e987d011d0c9b5d6590555654e0b23d15aec2dcdcb2c1fa23fec73fb5c0e307c960c334b SHA512 04e0964e714ede697d49aeecd4008102d653472664d22fc2f491e93d8a5cc18a9db2980d57a23a8ea88f1fab9b98aeb2d36fc112c0a0aa3510e152a8edcb1f95
+DIST BertiniUsersManual.pdf 1188567 BLAKE2B d940e95a86ec2b81d5afff3ade9fe28f5c3034e9250a844d3b8ad4de5ded1b4b98a68d2da1f61e17fd7f25ed481522805505850fc011f2a5642ca7cee4e86c8f SHA512 f206645cf20eb4da9e00b62440e612e0037fe02882167cdb48074d4532b913a940b551f4624fd00309c8f5d2a9775350430b143277b1dfe8064fd899a58408d9

sci-mathematics/bertini/bertini-1.6.ebuild

@@ -0,0 +1,65 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+MYP=BertiniSource_v${PV}
+
+inherit toolchain-funcs flag-o-matic
+
+DESCRIPTION="Software for Numerical Algebraic Geometry"
+HOMEPAGE="http://bertini.nd.edu"
+SRC_URI="https://bertini.nd.edu/${MYP}.tar.gz
+	doc? ( https://bertini.nd.edu/BertiniUsersManual.pdf )"
+S="${WORKDIR}"/${MYP/./}
+
+LICENSE="bertini"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="doc examples +optimization"
+
+RDEPEND="
+	dev-libs/gmp
+	dev-libs/mpfr
+"
+DEPEND="${RDEPEND}"
+BDEPEND="
+	sys-devel/bison
+	sys-devel/flex
+"
+
+DOCS=( AUTHORS ChangeLog NEWS README )
+
+src_prepare() {
+	default
+
+	# bug #723328
+	append-cflags -fcommon
+
+	# Ensure this is before the CFLAGS sed
+	# or breakage occurs if 'gcc' is in your CFLAGS
+	sed -i -e "s/gcc/$(tc-getCC)/" src/Makefile || die
+
+	if ! use optimization ; then
+		sed -i -e "s/\$(OPT)/ ${CFLAGS} ${CXXFLAGS} ${LDFLAGS}/" src/Makefile || die
+	else
+		# If people want the optimisation offered by upstream,
+		# let's ensure they don't accidentally override it.
+		filter-flags -O?
+		sed -i -e "s/\$(OPT)/ \$(OPT) ${CFLAGS} ${LDFLAGS}/" src/Makefile || die
+	fi
+}
+
+src_configure() {
+	econf --prefix=/usr --includedir=/usr/include/${PN}
+
+	use doc && DOCS+=( "${DISTDIR}"/BertiniUsersManual.pdf )
+}
+
+src_install() {
+	emake DESTDIR="${D}" install
+
+	find "${ED}" -name "*.la" -delete || die
+
+	einstalldocs
+}