mirror of
https://github.com/gentoo-mirror/gentoo.git
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dev-lang/R: bump to 3.3.2, thanks to Neil Shephard (bug #598834)
Package-Manager: portage-2.3.3
This commit is contained in:
Denis Dupeyron
@@ -1,3 +1,4 @@
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DIST R-20130129.bash_completion.bz2 4209 SHA256 487e969b94563fec98ec58de7e6142e9361d4219088add0fca282b482a9e01b1 SHA512 910b26e16cfebe677f438abfa5f2652e582db143d91dbf0e7d4b1ea33462c7e5c89c3a3619c63ae98bba26b11a5adb16eda9d344f8cdbe4f0feabc546993c1a5 WHIRLPOOL 2368efaed37fcb6e010f6a234864631f68549bd8e3f733561170cc5b28f5557e546d8561246fb265a481a47991a262fec3acf6abc1dc3929a9357405e0d3c6fc
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DIST R-3.2.2.tar.gz 29772864 SHA256 9c9152e74134b68b0f3a1c7083764adc1cb56fd8336bec003fd0ca550cd2461d SHA512 71ba470875262b9f00fb6970f209788df4dad30e0a28373b824b60d8bc6401afb7786e65387663c6490c7ddcd2bfd7f808a270a3e63238f3d7565d5f93607138 WHIRLPOOL fea59929ada1d67dafc6ad89409d18ad173af7990384033f490a00e0f794d9919aecf7cd37089d105fe03b9cf64d079e5d148622571cec3eb924c1c5bd00081e
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DIST R-3.3.1.tar.gz 29848329 SHA256 3dc59ae5831f5380f83c169bac2103ad052efe0ecec4ffa74bde4d85a0fda9e2 SHA512 d0ff85e99b9ec9cac672aa30d7d1a854778c6a610bcc5336e8c60c8c74f20856f2bfeae085af793fad646ff45cb4677d9d6dcbaa18212591f72f00a02339f4cd WHIRLPOOL 6e2edb60173a54c8b25d16201c24176b3ea837287e6d306c9d2e2c4578764b0d469d9c17228b6be67dda646a4272f30b331dbbc6238a6e851eb5320f04c7f151
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DIST R-3.3.2.tar.gz 29440670 SHA256 d294ad21e9f574fb4828ebb3a94b8cb34f4f304a41687a994be00dd41a4e514c SHA512 06a98687c0b180cb0bfd57440ea26088212d9f48948d503136475bf54b42d72cfec5bea7e333c0cedd60733bd614dd0f8c2eced7e24478b6c89f48e8d0c43482 WHIRLPOOL a68112df87552cc6ca8cd6b78b99dda2a22b8f4cfcd87a4512d541d25ef21358ede1ba71b4d7e9f274bf4e4340de18355a777d9af2ed41c0a498fa11d91cf0d8
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201
dev-lang/R/R-3.3.2.ebuild
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201
dev-lang/R/R-3.3.2.ebuild
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@@ -0,0 +1,201 @@
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# Copyright 1999-2016 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Id$
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EAPI=5
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inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs
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BCP=${PN}-20130129.bash_completion
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DESCRIPTION="Language and environment for statistical computing and graphics"
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HOMEPAGE="http://www.r-project.org/"
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SRC_URI="
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mirror://cran/src/base/R-3/${P}.tar.gz
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https://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2"
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LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
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SLOT="0"
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KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
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IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
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REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
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CDEPEND="
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app-arch/bzip2:0=
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app-arch/xz-utils:0=
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app-text/ghostscript-gpl
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>=dev-libs/libpcre-8.35:3=
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virtual/blas:0
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|| ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath )
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cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= )
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icu? ( dev-libs/icu:= )
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jpeg? ( virtual/jpeg:0 )
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lapack? ( virtual/lapack:0 )
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perl? ( dev-lang/perl )
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png? ( media-libs/libpng:0= )
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readline? ( sys-libs/readline:0= )
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tiff? ( media-libs/tiff:0= )
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tk? ( dev-lang/tk:0= )
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X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
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DEPEND="${CDEPEND}
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virtual/pkgconfig
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doc? (
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virtual/latex-base
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dev-texlive/texlive-fontsrecommended
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)"
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RDEPEND="${CDEPEND}
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>=sys-libs/zlib-1.2.5.1-r2:0[minizip]
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java? ( >=virtual/jre-1.5 )"
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RESTRICT="minimal? ( test )"
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pkg_setup() {
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if use openmp; then
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if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then
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ewarn "OpenMP is not available in your current selected gcc"
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die "need openmp capable gcc"
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fi
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FORTRAN_NEED_OPENMP=1
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fi
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fortran-2_pkg_setup
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filter-ldflags -Wl,-Bdirect -Bdirect
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# avoid using existing R installation
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unset R_HOME
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# Temporary fix for bug #419761
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if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
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append-flags -fno-ipa-cp-clone
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fi
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}
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src_prepare() {
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epatch \
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"${FILESDIR}"/${PN}-2.11.1-parallel.patch \
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"${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch \
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"${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch
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# fix packages.html for doc (gentoo bug #205103)
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sed -i \
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-e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
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src/library/tools/R/Rd.R || die
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# fix Rscript path when installed (gentoo bug #221061)
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sed -i \
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-e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT%/}/usr/$(get_libdir)/${PN}\"':" \
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src/unix/Makefile.in || die "sed unix Makefile failed"
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# fix HTML links to manual (gentoo bug #273957)
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sed -i \
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-e 's:\.\./manual/:manual/:g' \
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$(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
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use lapack && \
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export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
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if use X; then
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export R_BROWSER="$(type -p xdg-open)"
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export R_PDFVIEWER="$(type -p xdg-open)"
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fi
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use perl && \
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export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
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# don't search /usr/local
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sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
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# Fix for Darwin (OS X)
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if use prefix; then
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if [[ ${CHOST} == *-darwin* ]] ; then
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sed -i \
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-e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
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-e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
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-e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
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-e "/SHLIB_EXT/s/\.so/.dylib/" \
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configure.ac || die
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# sort of "undo" 2.14.1-rmath-shared.patch
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sed -i \
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-e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \
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src/nmath/standalone/Makefile.in || die
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else
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append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib"
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fi
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fi
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AT_M4DIR=m4 eaclocal
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eautoconf
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}
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src_configure() {
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# --with-system-tre \
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# tre is patched from upstream
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econf \
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--enable-byte-compiled-packages \
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--enable-R-shlib \
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--disable-R-framework \
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--with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
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--docdir="${EPREFIX}/usr/share/doc/${PF}" \
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rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
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$(use_enable java) \
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$(use_enable nls) \
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$(use_enable openmp) \
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$(use_enable profile R-profiling) \
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$(use_enable profile memory-profiling) \
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$(use_enable static-libs static) \
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$(use_enable static-libs R-static-lib) \
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$(use_with cairo) \
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$(use_with icu ICU) \
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$(use_with jpeg jpeglib) \
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$(use_with lapack) \
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$(use_with !minimal recommended-packages) \
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$(use_with png libpng) \
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$(use_with readline) \
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$(use_with tiff libtiff) \
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$(use_with tk tcltk) \
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$(use_with tk tk-config "${EPREFIX}"/usr/lib/tkConfig.sh) \
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$(use_with tk tcl-config "${EPREFIX}"/usr/lib/tclConfig.sh) \
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$(use_with X x)
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}
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src_compile() {
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export VARTEXFONTS="${T}/fonts"
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emake AR="$(tc-getAR)"
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emake -C src/nmath/standalone \
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shared $(use static-libs && echo static) AR="$(tc-getAR)"
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use doc && emake info pdf
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}
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src_install() {
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default
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emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
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if use doc; then
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emake DESTDIR="${D}" install-info install-pdf
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dosym ../manual /usr/share/doc/${PF}/html/manual
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fi
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cat > 99R <<-EOF
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LDPATH=${EROOT%/}/usr/$(get_libdir)/${PN}/lib
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R_HOME=${EROOT%/}/usr/$(get_libdir)/${PN}
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EOF
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doenvd 99R
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newbashcomp "${WORKDIR}"/${BCP} ${PN}
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# The buildsystem has a different understanding of install_names than
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# we require. Since it builds modules like shared objects (wrong), many
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# objects (all modules) get an incorrect install_name. Fixing the build
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# system here is not really trivial.
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if [[ ${CHOST} == *-darwin* ]] ; then
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local mod
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pushd "${ED}"/usr/lib/R > /dev/null
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for mod in $(find . -name "*.dylib") ; do
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mod=${mod#./}
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install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \
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"${mod}"
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done
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popd > /dev/null
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fi
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docompress -x /usr/share/doc/${PF}/{BioC_mirrors.csv,CRAN_mirrors.csv,KEYWORDS.db,NEWS.rds}
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}
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pkg_postinst() {
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if use java; then
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einfo "Re-initializing java paths for ${P}"
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R CMD javareconf
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fi
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}
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