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sci-libs/hdf5: add 2.2.0

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Bug: https://bugs.gentoo.org/982104
Signed-off-by: David Seifert <soap@gentoo.org>
This commit is contained in:
David Seifert
2026-09-07 14:48:24 +02:00
parent 928fdc6328
commit b3cb278dc9
6 changed files with 137 additions and 0 deletions
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5
profiles/arch/alpha/package.use.mask
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# Copyright 1999-2026 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
# David Seifert <soap@gentoo.org> (2026-09-07)
# sci-libs/libaec is not keyworded here, and >=sci-libs/hdf5-2.2.0
# requires it directly instead of via virtual/szip
>=sci-libs/hdf5-2.2.0 szip
# Sam James <sam@gentoo.org> (2026-09-04)
# sys-apps/xdg-desktop-portal not keyworded here
x11-base/xwayland libei

5
profiles/arch/hppa/package.use.mask
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@@ -4,6 +4,11 @@
# NOTE: When masking a USE flag due to missing keywords, please file a keyword
# request bug for the hppa arch.
# David Seifert <soap@gentoo.org> (2026-09-07)
# sci-libs/libaec is not keyworded here, and >=sci-libs/hdf5-2.2.0
# requires it directly instead of via virtual/szip
>=sci-libs/hdf5-2.2.0 szip
# Sam James <sam@gentoo.org> (2026-09-04)
# sys-apps/xdg-desktop-portal not keyworded here
x11-base/xwayland libei

5
profiles/arch/ppc/package.use.mask
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@@ -1,6 +1,11 @@
# Copyright 2023-2026 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
# David Seifert <soap@gentoo.org> (2026-09-07)
# sci-libs/libaec is not keyworded here (bug #966099), and >=sci-libs/hdf5-2.2.0
# requires it directly instead of via virtual/szip
>=sci-libs/hdf5-2.2.0 szip
# Nicolas PARLANT <nicolas.parlant@parhuet.fr> (2026-07-30)
# dev-python/qtpy is not keyworded here
media-libs/libffado gui

5
profiles/arch/sparc/package.use.mask
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@@ -1,6 +1,11 @@
# Copyright 1999-2026 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
# David Seifert <soap@gentoo.org> (2026-09-07)
# sci-libs/libaec is not keyworded here, and >=sci-libs/hdf5-2.2.0
# requires it directly instead of via virtual/szip
>=sci-libs/hdf5-2.2.0 szip
# James Le Cuirot <chewi@gentoo.org> (2026-09-05)
# VIS is a sparc-specific SIMD optimisation.
media-libs/libggi -vis

1
sci-libs/hdf5/Manifest
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DIST hdf5-1.14.6.tar.gz 39289609 BLAKE2B c604384c0d98ce092ac59a67ec5baf3d593548d37defa0fd29b676dd0837e321fff937368edb50591ac8841116648e41ed8505611518a2c914a380191a7c0388 SHA512 d93194ad8f48acf110aae317f4c37104b9042f89ef72919aac887817e4c2713449c4cb2ab6a163c61ab1c12811170d7611cdf69322b0e0f96420fcc7f99fdd67
DIST hdf5-2.2.0.tar.gz 42131403 BLAKE2B 4c964d812e086034d42c3577e8b543d2e05f2a65c838b9d63ac6b28fe639763ddcb04a514ecb2e4f619513ccb83575ffc7fb90c13f7c5f4189359452a3881baf SHA512 597052c7cf4ec40c5655216956fe6a32c3ea1fdc69ddd7f9c39cddd42fd035efbc03fa5837a9378b5c4cd3f88c6b7b5ee054e9db5a739850505149749ed3fefa

116
sci-libs/hdf5/hdf5-2.2.0.ebuild Normal file
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# Copyright 1999-2026 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
FORTRAN_NEEDED=fortran
inherit cmake fortran-2 flag-o-matic toolchain-funcs
DESCRIPTION="General purpose library and file format for storing scientific data"
HOMEPAGE="https://github.com/HDFGroup/hdf5/"
SRC_URI="https://github.com/HDFGroup/hdf5/releases/download/${PV}/${P}.tar.gz"
LICENSE="NCSA-HDF"
SLOT="0/320-cmake"
KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~loong ~ppc ~ppc64 ~riscv ~s390 ~sparc ~x86 ~arm64-macos ~x64-macos"
IUSE="cxx debug fortran +hl mpi szip test threads unsupported zlib"
RESTRICT="!test? ( test )"
REQUIRED_USE="
!unsupported? (
?? ( cxx mpi )
threads? ( !cxx !mpi !fortran !hl )
)
"
# HDF5 2.x requires libaec's libsz compatibility library, so virtual/szip
# (which also allows sci-libs/szip) is not sufficient here.
DEPEND="
mpi? ( virtual/mpi[romio,fortran?] )
szip? ( sci-libs/libaec:=[szip] )
zlib? ( virtual/zlib:= )
"
RDEPEND="
${DEPEND}
"
BDEPEND="
dev-lang/perl
"
pkg_setup() {
use fortran && fortran-2_pkg_setup
if use mpi; then
if has_version 'sci-libs/hdf5[-mpi]'; then
ewarn "Installing hdf5 with mpi enabled with a previous hdf5 with mpi disabled may fail."
ewarn "Try to uninstall the current hdf5 prior to enabling mpi support."
fi
export CC=mpicc
use fortran && export FC=mpif90
elif has_version 'sci-libs/hdf5[mpi]'; then
ewarn "Installing hdf5 with mpi disabled while having hdf5 installed with mpi enabled may fail."
ewarn "Try to uninstall the current hdf5 prior to disabling mpi support."
fi
}
src_configure() {
# bug #686620
use sparc && tc-is-gcc && append-flags -fno-tree-ccp
local mycmakeargs=(
# lib/cmake dirs follow CMAKE_INSTALL_LIBDIR from the eclass
-DHDF5_USE_GNU_DIRS=ON
# just LICENSE
-DHDF5_INSTALL_DATA_DIR=tmp
# redundant to include?
-DHDF5_INSTALL_MODULE_DIR=tmp
-DHDF5_INSTALL_DOC_DIR=share/doc/${PF}
-DH5_DEFAULT_PLUGINDIR="${EPREFIX}/usr/$(get_libdir)/${PN}/plugin"
-DHDF5_ALLOW_UNSUPPORTED=$(usex unsupported)
-DHDF5_ONLY_SHARED_LIBS=ON
-DHDF5_ENABLE_TRACE=$(usex debug)
-DHDF5_ENABLE_HDFS=OFF
# the direct VFD needs O_DIRECT, which is Linux-only here;
# requesting it elsewhere is a hard configure error
-DHDF5_ENABLE_DIRECT_VFD=$(usex kernel_linux)
-DHDF5_ENABLE_PARALLEL=$(usex mpi)
-DHDF5_ENABLE_SUBFILING_VFD=OFF
-DHDF5_ENABLE_SZIP_SUPPORT=$(usex szip)
-DHDF5_ENABLE_ZLIB_SUPPORT=$(usex zlib)
-DHDF5_USE_ZLIB_NG=OFF
-DHDF5_ENABLE_THREADSAFE=$(usex threads)
-DHDF5_ENABLE_CONCURRENCY=OFF
-DHDF5_ENABLE_MAP_API=OFF
-DHDF5_BUILD_DOC=OFF
-DBUILD_TESTING=$(usex test)
-DHDF5_BUILD_PARALLEL_TOOLS=OFF
-DHDF5_BUILD_TOOLS=ON
-DHDF5_ENABLE_PLUGIN_SUPPORT=OFF
-DHDF5_BUILD_HL_LIB=$(usex hl)
-DHDF5_BUILD_FORTRAN=$(usex fortran)
-DHDF5_BUILD_CPP_LIB=$(usex cxx)
-DHDF5_BUILD_JAVA=OFF
-DHDF5_BUILD_EXAMPLES=OFF
)
# do not force the compiler used for build
if use mpi; then
mycmakeargs+=( -DHDF5_H5CC_C_COMPILER=mpicc )
use cxx && mycmakeargs+=( -DHDF5_H5CC_CXX_COMPILER=mpic++ )
use fortran && mycmakeargs+=( -DHDF5_H5CC_Fortran_COMPILER=mpif90 )
else
mycmakeargs+=( -DHDF5_H5CC_C_COMPILER='${CC:-cc}' )
use cxx && mycmakeargs+=( -DHDF5_H5CC_CXX_COMPILER='${CXX:-c++}' )
use fortran &&
mycmakeargs+=( -DHDF5_H5CC_Fortran_COMPILER='${FC:-gfortran}' )
fi
cmake_src_configure
}
src_install() {
cmake_src_install
rm -r "${ED}/usr/tmp" || die
}