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sci-mathematics/petsc: Remove old
Signed-off-by: Michał Górny <mgorny@gentoo.org> Part-of: https://github.com/gentoo/gentoo/pull/41697 Signed-off-by: Michał Górny <mgorny@gentoo.org>
This commit is contained in:
Michał Górny
@@ -1,6 +1,3 @@
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DIST petsc-3.16.0-fftw-without-mpi.patch.bz2 5824 BLAKE2B 59615b1bbaf8ca1da92d7d193a45a2dd434f762cd741d711d4f408183a201a276ac3c968a3e7d740d19212120271701bce52bb7b0f4e311268f40915c81f9dcb SHA512 8e07dfe56a9150ce9a3a5ab8012657875ef84e6e7daa60560bbdd9062078c876a826057f3f3eaf1697ce046a82756ee6eb6a8b819eb51245367c9d5c8a72ee8e
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DIST petsc-3.16.0.tar.gz 16748960 BLAKE2B 87f9fdb79a9c44e5f476fa4746ad0cbe72f3eda9f6039f2e4743105626701d7c8d6c010fdb9d89becf8619288d0b7a60c8bc4e2fc0793eac5b39030b02c04fd9 SHA512 5280032fb4ec4d058733788bb0ae674e7400565e204133bd10ed88a2965230ec7adeaca2d498267ce661377ca7e6f9d948992206b1d679587606cb422c004655
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DIST petsc-3.17.1.tar.gz 17082265 BLAKE2B de1bfe45f93e18e32181499e59912df9225c8e24d75f52e641e552fd43e4d5be48d549d284365b173aa93e51603f5b7740eaac0557ff8c7c96b370f4683257f6 SHA512 8c81cc148b1a899a55e54a013d61519ec7b44f98f7ae30c3f8d0e83ba285b23f4b4d9e2cd483c531d337bc41887e4079b727ba73676b1b653910140291e93575
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DIST petsc-3.18.2.tar.gz 18409507 BLAKE2B 999d4fc80dedb5f9ce58333b6052b15ff499e3d5e4fee3e37639f5e3d2c5e86b514290d01e75b71795467436254d2cb8b05dac3d6252c80db898010bbed95544 SHA512 a8e9757144a20d61c004f54615821df7f9dbd920af71fea4674eb0fd1bf9f0b50dbc5c89aae285fef35a23daf67ba9647e479a6e92dbcd26e53fd8302735a47b
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DIST petsc-3.19.1.tar.gz 16659061 BLAKE2B 8c7b22e5f97756261a5d0e8b707670d55db53e209fd1e116a2adb517d42f5e8bd5ecc911c9e967b88a8dc60a2d872c1d7a279539c65064884b4cfbe856434ad3 SHA512 5b9b71599a95e2d82d18d5313c424a08eead0c10f27f40c82159839ef0fa8aeda88ddea693a12d58b8ac29a41c4138e8188a3c91d6af540196ee3a977cf9539d
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DIST petsc-3.19.2.tar.gz 16627765 BLAKE2B 1267db717989c3819f32ac6a62642054af2ac49d9e9276ffd4f0846d73e31ae4a5dcca4ad794b91cdb29463b7ec68040baa4e1cad99aaef8ab910ff7b64d7478 SHA512 f8feeb66fa8bd2406227be0e2cc2946485238362270d40e3f07dc89491177751f6bf680f51b70696bc30b677624c0e525c3fa9784eabdeb2337697ec56f63fc1
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@@ -18,7 +18,6 @@
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<flag name="metis">Add support for metis (<pkg>sci-libs/parmetis</pkg>)</flag>
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<flag name="mumps">Add support for mumps (<pkg>sci-libs/mumps</pkg>)</flag>
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<flag name="scotch">Add support for scotch (<pkg>sci-libs/scotch</pkg>)</flag>
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<flag name="sparse">Use suitesparse (<pkg>sci-libs/suitesparse</pkg>) including cholmod (<pkg>sci-libs/cholmod</pkg>) for sparse factorization</flag>
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<flag name="superlu">Use superlu (<pkg>sci-libs/superlu</pkg>) for preconditioning</flag>
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</use>
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<upstream>
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@@ -1,192 +0,0 @@
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# Copyright 1999-2024 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=7
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PYTHON_COMPAT=( python3_10 )
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inherit flag-o-matic fortran-2 python-any-r1 toolchain-funcs
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DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
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HOMEPAGE="https://www.mcs.anl.gov/petsc/"
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SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${P}.tar.gz"
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SRC_URI+=" https://dev.gentoo.org/~sam/distfiles/${CATEGORY}/${PN}/${P}-fftw-without-mpi.patch.bz2"
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LICENSE="BSD-2"
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SLOT="0"
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KEYWORDS="~amd64 ~x86"
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IUSE="afterimage boost complex-scalars cxx debug fftw
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fortran hdf5 hypre mpi metis mumps scotch sparse superlu threads X"
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# hypre and superlu curretly exclude each other due to missing linking to hypre
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# if both are enabled
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REQUIRED_USE="
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afterimage? ( X )
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complex-scalars? ( !hypre !superlu )
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hdf5? ( mpi )
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hypre? ( cxx mpi !superlu )
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mumps? ( mpi scotch )
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scotch? ( mpi )
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superlu? ( !hypre )
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"
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RDEPEND="
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virtual/blas
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virtual/lapack
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afterimage? ( media-libs/libafterimage )
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boost? ( dev-libs/boost )
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fftw? ( sci-libs/fftw:3.0[mpi?] )
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hdf5? ( sci-libs/hdf5:=[mpi?] )
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hypre? ( >=sci-libs/hypre-2.18.0[mpi?] )
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metis? ( >=sci-libs/parmetis-4 )
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mpi? ( virtual/mpi[cxx?,fortran?] )
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mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack )
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scotch? ( sci-libs/scotch[mpi?] )
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sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 )
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superlu? ( >=sci-libs/superlu-5 )
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X? ( x11-libs/libX11 )
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"
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DEPEND="${RDEPEND}
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${PYTHON_DEPS}
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virtual/pkgconfig
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dev-build/cmake
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sys-apps/which
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"
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PATCHES=(
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"${FILESDIR}"/${PN}-3.7.0-disable-rpath.patch
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"${FILESDIR}"/${P}-fix_sandbox_violation.patch
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"${WORKDIR}"/${P}-fftw-without-mpi.patch
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)
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# petsc uses --with-blah=1 and --with-blah=0 to en/disable options
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petsc_enable() {
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use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
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}
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# add external library:
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# petsc_with use_flag libname libdir
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# petsc_with use_flag libname include linking_libs
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petsc_with() {
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local myuse p=${2:-${1}}
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if use ${1}; then
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myuse="--with-${p}=1"
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if [[ $# -ge 4 ]]; then
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myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
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shift 3
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myuse="${myuse} --with-${p}-lib=$@"
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else
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myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
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fi
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else
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myuse="--with-${p}=0"
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fi
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echo ${myuse}
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}
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# select between configure options depending on use flag
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petsc_select() {
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use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
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}
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src_configure() {
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# bug 548498
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# PETSc runs mpi processes during configure that result in a sandbox
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# violation by trying to open /proc/mtrr rw. This is not easy to
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# mitigate because it happens in libpciaccess.so called by libhwloc.so,
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# which is used by libmpi.so.
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addpredict /proc/mtrr
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# if mpi is built with knem support it needs /dev/knem too
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addpredict /dev/knem
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# configureMPITypes with openmpi-2* insists on accessing the scaling
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# governor rw.
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addpredict /sys/devices/system/cpu/
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# bug 771711
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# configureMPIEXEC and configureMPITypes access /dev/nvidiactl
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addpredict /dev/nvidiactl
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# bug 810841
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addpredict /dev/kfd
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local mylang
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local myopt
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use cxx && mylang="cxx" || mylang="c"
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use debug && myopt="debug" || myopt="opt"
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# environmental variables expected by petsc during build
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export PETSC_DIR="${S}"
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export PETSC_ARCH="linux-gnu-${mylang}-${myopt}"
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if use debug; then
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strip-flags
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filter-flags -O*
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fi
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# C Support on CXX builds is enabled if possible i.e. when not using
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# complex scalars (no complex type for both available at the same time)
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econf \
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scrollOutput=1 \
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FFLAGS="${FFLAGS} -fPIC" \
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CFLAGS="${CFLAGS} -fPIC" \
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CXXFLAGS="${CXXFLAGS} -fPIC" \
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LDFLAGS="${LDFLAGS}" \
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--prefix="${EPREFIX}/usr/$(get_libdir)/petsc" \
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--with-shared-libraries \
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--with-single-library \
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--with-clanguage=${mylang} \
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$(use cxx && ! use complex-scalars && echo "with-c-support=1") \
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--with-petsc-arch=${PETSC_ARCH} \
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--with-precision=double \
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--with-gnu-compilers \
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--with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs blas lapack)" \
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$(petsc_enable debug debugging) \
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$(petsc_enable mpi) \
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$(petsc_select mpi cc mpicc $(tc-getCC)) \
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$(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
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$(petsc_enable fortran) \
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$(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \
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$(petsc_enable mpi mpi-compilers) \
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$(petsc_select complex-scalars scalar-type complex real) \
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--with-windows-graphics=0 \
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--with-matlab=0 \
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--with-cmake:BOOL=1 \
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$(petsc_enable threads pthread) \
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$(petsc_with afterimage afterimage \
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/usr/include/libAfterImage -lAfterImage) \
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$(use_with hdf5) \
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$(petsc_with hypre hypre \
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/usr/include/hypre -lHYPRE) \
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$(use_with sparse suitesparse) \
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$(petsc_with superlu superlu \
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/usr/include/superlu -lsuperlu) \
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$(use_with X x) \
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$(use_with X x11) \
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$(petsc_with scotch ptscotch \
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/usr/include/scotch \
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[-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
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$(petsc_with mumps scalapack \
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/usr/include/scalapack -lscalapack) \
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$(petsc_with mumps mumps \
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/usr/include \
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[-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
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--with-imagemagick=0 \
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--with-python=0 \
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$(use_with boost) \
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$(use_with fftw)
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}
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src_install() {
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emake DESTDIR="${ED}" install
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# add PETSC_DIR to environmental variables
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cat >> 99petsc <<- EOF
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PETSC_DIR=${EPREFIX}/usr/$(get_libdir)/petsc
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LDPATH=${EPREFIX}/usr/$(get_libdir)/petsc/lib
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EOF
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doenvd 99petsc
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}
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@@ -1,190 +0,0 @@
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# Copyright 1999-2024 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
|
||||
|
||||
EAPI=8
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|
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PYTHON_COMPAT=( python3_10 pypy3 )
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|
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inherit flag-o-matic fortran-2 python-any-r1 toolchain-funcs
|
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|
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DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
|
||||
HOMEPAGE="https://www.mcs.anl.gov/petsc"
|
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SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${P}.tar.gz"
|
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|
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LICENSE="BSD-2"
|
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SLOT="0"
|
||||
KEYWORDS="~amd64 ~x86"
|
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IUSE="afterimage boost complex-scalars debug fftw
|
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fortran hdf5 hypre int64 mpi metis mumps scotch superlu threads X"
|
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|
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# readd sparse when suitesparse-5.6.0 is in tree
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# sparse? ( >=sci-libs/suitesparse-5.6.0 >=sci-libs/cholmod-1.7.0 )
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# $(use_with sparse suitesparse) \
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RDEPEND="
|
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virtual/blas
|
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virtual/lapack
|
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|
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afterimage? ( media-libs/libafterimage )
|
||||
boost? ( dev-libs/boost )
|
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fftw? ( sci-libs/fftw:3.0[mpi?] )
|
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hdf5? ( sci-libs/hdf5:=[mpi?] )
|
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hypre? ( >=sci-libs/hypre-2.18.0[int64?,mpi?] )
|
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metis? ( >=sci-libs/parmetis-4 )
|
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mpi? ( virtual/mpi[fortran?] )
|
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mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack )
|
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scotch? ( sci-libs/scotch[int64?,mpi?] )
|
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superlu? ( >=sci-libs/superlu-5 )
|
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X? ( x11-libs/libX11 )
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"
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DEPEND="
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${RDEPEND}
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${PYTHON_DEPS}
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"
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BDEPEND="
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dev-build/cmake
|
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sys-apps/which
|
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virtual/pkgconfig
|
||||
"
|
||||
|
||||
# hypre and superlu curretly exclude each other due to missing linking to hypre
|
||||
# if both are enabled
|
||||
REQUIRED_USE="
|
||||
afterimage? ( X )
|
||||
complex-scalars? ( !hypre !superlu )
|
||||
hdf5? ( mpi )
|
||||
hypre? ( mpi !superlu )
|
||||
mumps? ( mpi scotch )
|
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scotch? ( mpi )
|
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superlu? ( !hypre )
|
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"
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PATCHES=(
|
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"${FILESDIR}/${PN}-3.7.0-disable-rpath.patch"
|
||||
"${FILESDIR}"/${PN}-3.16.0-fix_sandbox_violation.patch
|
||||
)
|
||||
|
||||
# petsc uses --with-blah=1 and --with-blah=0 to en/disable options
|
||||
petsc_enable() {
|
||||
use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
|
||||
}
|
||||
# add external library:
|
||||
# petsc_with use_flag libname libdir
|
||||
# petsc_with use_flag libname include linking_libs
|
||||
petsc_with() {
|
||||
local myuse p=${2:-${1}}
|
||||
if use ${1}; then
|
||||
myuse="--with-${p}=1"
|
||||
if [[ $# -ge 4 ]]; then
|
||||
myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
|
||||
shift 3
|
||||
myuse="${myuse} --with-${p}-lib=$@"
|
||||
else
|
||||
myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
|
||||
fi
|
||||
else
|
||||
myuse="--with-${p}=0"
|
||||
fi
|
||||
echo ${myuse}
|
||||
}
|
||||
|
||||
# select between configure options depending on use flag
|
||||
petsc_select() {
|
||||
use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
|
||||
}
|
||||
|
||||
src_configure() {
|
||||
# bug 548498
|
||||
# PETSc runs mpi processes during configure that result in a sandbox
|
||||
# violation by trying to open /proc/mtrr rw. This is not easy to
|
||||
# mitigate because it happens in libpciaccess.so called by libhwloc.so,
|
||||
# which is used by libmpi.so.
|
||||
addpredict /proc/mtrr
|
||||
# if mpi is built with knem support it needs /dev/knem too
|
||||
addpredict /dev/knem
|
||||
|
||||
# configureMPITypes with openmpi-2* insists on accessing the scaling
|
||||
# governor rw.
|
||||
addpredict /sys/devices/system/cpu/
|
||||
|
||||
# bug 771711
|
||||
# configureMPIEXEC and configureMPITypes access /dev/nvidiactl
|
||||
addpredict /dev/nvidiactl
|
||||
|
||||
# bug 810841
|
||||
addpredict /dev/kfd
|
||||
|
||||
local myopt
|
||||
|
||||
use debug && myopt="debug" || myopt="opt"
|
||||
|
||||
# environmental variables expected by petsc during build
|
||||
|
||||
export PETSC_DIR="${S}"
|
||||
export PETSC_ARCH="linux-gnu-c-${myopt}"
|
||||
|
||||
if use debug; then
|
||||
strip-flags
|
||||
filter-flags -O*
|
||||
fi
|
||||
|
||||
tc-export AR RANLIB
|
||||
|
||||
# C Support on CXX builds is enabled if possible i.e. when not using
|
||||
# complex scalars (no complex type for both available at the same time)
|
||||
|
||||
econf \
|
||||
scrollOutput=1 \
|
||||
AR="${AR}" \
|
||||
CFLAGS="${CFLAGS} -fPIC" \
|
||||
CPPFLAGS="${CPPFLAGS}" \
|
||||
CXXFLAGS="${CXXFLAGS} -fPIC" \
|
||||
CXXOPTFLAGS="${CXXFLAGS} -fPIC" \
|
||||
FCFLAGS="${FCFLAGS} -fPIC" \
|
||||
FFLAGS="${FFLAGS} -fPIC" \
|
||||
LDFLAGS="${LDFLAGS}" \
|
||||
MAKEFLAGS="${MAKEFLAGS}" \
|
||||
RANLIB="${RANLIB}" \
|
||||
--prefix="${EPREFIX}/usr/$(get_libdir)/petsc" \
|
||||
--with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs blas lapack)" \
|
||||
--with-cmake:BOOL=1 \
|
||||
--with-gnu-compilers \
|
||||
--with-imagemagick=0 \
|
||||
--with-matlab=0 \
|
||||
--with-petsc-arch="${PETSC_ARCH}" \
|
||||
--with-precision=double \
|
||||
--with-python=0 \
|
||||
--with-shared-libraries \
|
||||
--with-single-library \
|
||||
--with-windows-graphics=0 \
|
||||
$(petsc_enable debug debugging) \
|
||||
$(petsc_enable fortran) \
|
||||
$(petsc_enable mpi) \
|
||||
$(petsc_enable mpi mpi-compilers) \
|
||||
$(petsc_enable threads pthread) \
|
||||
$(petsc_select complex-scalars scalar-type complex real) \
|
||||
$(petsc_select mpi cc mpicc $(tc-getCC)) \
|
||||
$(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
|
||||
$(petsc_with afterimage afterimage /usr/include/libAfterImage -lAfterImage) \
|
||||
$(petsc_with hypre hypre /usr/include/hypre -lHYPRE) \
|
||||
$(petsc_with superlu superlu /usr/include/superlu -lsuperlu) \
|
||||
$(petsc_with scotch ptscotch /usr/include/scotch [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
|
||||
$(petsc_with mumps scalapack /usr/include/scalapack -lscalapack) \
|
||||
$(petsc_with mumps mumps /usr/include [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
|
||||
$(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \
|
||||
$(use int64 && echo "--with-index-size=64") \
|
||||
$(use_with boost) \
|
||||
$(use_with fftw) \
|
||||
$(use_with hdf5) \
|
||||
$(use_with X x) \
|
||||
$(use_with X x11)
|
||||
}
|
||||
|
||||
src_install() {
|
||||
emake DESTDIR="${ED}" install
|
||||
|
||||
# add PETSC_DIR to environmental variables
|
||||
cat >> 99petsc <<- EOF
|
||||
PETSC_DIR=${EPREFIX}/usr/$(get_libdir)/petsc
|
||||
LDPATH=${EPREFIX}/usr/$(get_libdir)/petsc/lib
|
||||
EOF
|
||||
doenvd 99petsc
|
||||
}
|
||||
Reference in New Issue
Block a user