gentoo-mirror/gentoo
1
0
Fork 0
mirror of https://github.com/gentoo-mirror/gentoo.git synced 2026-09-24 04:59:14 -07:00
Code Issues Projects Releases Wiki Activity

sci-chemistry/openbabel: Resurect opebabel[python]

Browse Source 
File ${FILESDIR}/openbabel-python.cmake was accidently removed
by astrum in 3b032e0f3d

Closes: https://bugs.gentoo.org/837254
Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
This commit is contained in:
Alexey Shvetsov
2022-04-15 13:00:00 +03:00
parent cf0f415fa8
commit a7168ef5c9
1 changed files with 104 additions and 0 deletions
Download Patch File Download Diff File Expand all files Collapse all files

104
sci-chemistry/openbabel/files/openbabel-python.cmake Normal file
View File

@@ -0,0 +1,104 @@
# The following is a cmake fragment taken from scripts/CMakeLists.txt and
# edited for Gentoo python multibuild compatibility.
if (PYTHON_BINDINGS)
# Tags should be edited to reflect the active python implementation
set(EPYTHON @@EPYTHON@@)
set(PYTHON_INCUDE_DIR @@PYTHON_INCUDE_DIR@@)
set(PYTHON_LIBS @@PYTHON_LIBS@@)
set(PYTHON_SITEDIR @@PYTHON_SITEDIR@@)
include_directories(${PYTHON_INCUDE_DIR})
add_custom_command(
OUTPUT ${CMAKE_SOURCE_DIR}/scripts/${EPYTHON}/openbabel-python.cpp ${CMAKE_SOURCE_DIR}/scripts/${EPYTHON}/openbabel.py
COMMAND ${SWIG_EXECUTABLE} -python -c++ -small -O -templatereduce -naturalvar -I${CMAKE_SOURCE_DIR}/include -I${CMAKE_BINARY_DIR}/include -o ${CMAKE_SOURCE_DIR}/scripts/${EPYTHON}/openbabel-python.cpp ${eigen_define} -outdir ${CMAKE_SOURCE_DIR}/scripts/${EPYTHON} ${CMAKE_SOURCE_DIR}/scripts/openbabel-python.i
MAIN_DEPENDENCY openbabel-python.i
VERBATIM
)
configure_file(${CMAKE_SOURCE_DIR}/scripts/python/openbabel/__init__.py.in
${CMAKE_BINARY_DIR}/scripts/${EPYTHON}/openbabel/__init__.py)
add_library(bindings_python_${EPYTHON} MODULE ${CMAKE_SOURCE_DIR}/scripts/${EPYTHON}/openbabel-python.cpp)
target_link_libraries(bindings_python_${EPYTHON} ${PYTHON_LIBS} ${BABEL_LIBRARY})
set_target_properties(bindings_python_${EPYTHON}
PROPERTIES
OUTPUT_NAME _openbabel
LIBRARY_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/scripts/${EPYTHON}/openbabel
PREFIX ""
SUFFIX .so )
add_dependencies(bindings_python_${EPYTHON} openbabel)
install(TARGETS bindings_python_${EPYTHON}
LIBRARY DESTINATION ${PYTHON_SITEDIR}/openbabel
COMPONENT bindings_python)
install(FILES ${CMAKE_BINARY_DIR}/scripts/${EPYTHON}/openbabel/__init__.py
DESTINATION ${PYTHON_SITEDIR}/openbabel
COMPONENT bindings_python)
install(FILES ${CMAKE_SOURCE_DIR}/scripts/${EPYTHON}/openbabel.py
DESTINATION ${PYTHON_SITEDIR}/openbabel
COMPONENT bindings_python)
install(FILES ${CMAKE_SOURCE_DIR}/scripts/python/openbabel/pybel.py
DESTINATION ${PYTHON_SITEDIR}/openbabel
COMPONENT bindings_python)
if (ENABLE_TESTS)
# Make sure all module files are together in the same directory for testing
add_custom_command(TARGET bindings_python_${EPYTHON} POST_BUILD
COMMAND ${CMAKE_COMMAND} -E copy ${CMAKE_SOURCE_DIR}/scripts/${EPYTHON}/openbabel.py ${CMAKE_BINARY_DIR}/scripts/${EPYTHON}/openbabel/
COMMAND ${CMAKE_COMMAND} -E copy ${CMAKE_SOURCE_DIR}/scripts/python/openbabel/pybel.py ${CMAKE_BINARY_DIR}/scripts/${EPYTHON}/openbabel/)
set(TEST_SOURCE_DIR ${CMAKE_SOURCE_DIR}/test)
# define TESTDATADIR for tests that need input files
add_definitions(-DTESTDATADIR="${TEST_SOURCE_DIR}/files/")
# define FORMATDIR for location of format plugin binaries
set(FORMATDIR "${CMAKE_BINARY_DIR}/lib${LIB_SUFFIX}/")
add_definitions(-DFORMATDIR="${FORMATDIR}/")
include_directories(${TEST_SOURCE_DIR})
# The macro is modified from cmake/modules/UsePythonTest.cmake
MACRO(ADD_PYTHON_TEST TESTNAME FILENAME)
GET_SOURCE_FILE_PROPERTY(loc ${FILENAME} LOCATION)
STRING(REGEX REPLACE ";" " " wo_semicolumn "${ARGN}")
FILE(WRITE ${CMAKE_BINARY_DIR}/test/${TESTNAME}.cmake
"
MESSAGE(\"${PYTHONPATH}\")
EXECUTE_PROCESS(
COMMAND ${EPYTHON} ${loc} ${wo_semicolumn}
RESULT_VARIABLE import_res
OUTPUT_VARIABLE import_output
ERROR_VARIABLE import_output
)
# Pass the output back to ctest
IF(import_output)
MESSAGE(\${import_output})
ENDIF(import_output)
IF(import_res)
MESSAGE(SEND_ERROR \${import_res})
ENDIF(import_res)
"
)
ADD_TEST(${TESTNAME} ${CMAKE_COMMAND} -P ${CMAKE_BINARY_DIR}/test/${TESTNAME}.cmake)
ENDMACRO(ADD_PYTHON_TEST)
set(pybindtests
bindings
_pybel
example
obconv_writers
cdjsonformat
pcjsonformat
roundtrip
)
foreach(pybindtest ${pybindtests})
ADD_PYTHON_TEST(pybindtest_${pybindtest}_${EPYTHON} ${TEST_SOURCE_DIR}/test${pybindtest}.py)
set_tests_properties(pybindtest_${pybindtest}_${EPYTHON} PROPERTIES
ENVIRONMENT "PYTHONPATH=${CMAKE_BINARY_DIR}/scripts/${EPYTHON}:${CMAKE_BINARY_DIR}/lib${LIB_SUFFIX};LD_LIBRARY_PATH=${CMAKE_BINARY_DIR}/scripts/${EPYTHON}:${CMAKE_BINARY_DIR}/lib${LIB_SUFFIX}:\$ENV{LD_LIBRARY_PATH};BABEL_LIBDIR=${CMAKE_BINARY_DIR}/lib${LIB_SUFFIX}/;BABEL_DATADIR=${CMAKE_SOURCE_DIR}/data"
FAIL_REGULAR_EXPRESSION "ERROR;FAIL;Test failed"
)
endforeach(pybindtest ${pybindtests})
endif (ENABLE_TESTS)
endif(PYTHON_BINDINGS)