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sci-chemistry/votca-csg: remove old

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Package-Manager: portage-2.3.0
This commit is contained in:
Christoph Junghans
2017-01-02 07:41:20 -07:00
parent bf25854d86
commit 89aa96291f
5 changed files with 0 additions and 390 deletions
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9
sci-chemistry/votca-csg/Manifest
View File

@@ -1,12 +1,3 @@
DIST votca-csg-1.2.4.tar.gz 188345 SHA256 375b428c90247a3877f71c2d96200969bcaf2b081b8c7332ac770720df43646a SHA512 da814154be6700b56509d899ea16a2f974fd951792c78f2f8717b39b0165fe19121fefb2ef9531c63a8d4558d15776058d24b13e0e7ad0abb9d7b11fac0f5d1a WHIRLPOOL 64a86b09ae00435c68bf09e960c1d1738648811fe2a9ffb18f5529d30d6f94ebf1fc218b14e1ee0bfc911e5ca1e92c25404be045cf28e16ced98fd7ee4421418
DIST votca-csg-1.3.1.tar.gz 242384 SHA256 608225256cf97552cf860cb3754f59a49c55d8433cff07440b8a252645e7bcb6 SHA512 fed4e164b9661d48fd8fa3f57c0a567b88ef2fe0a7a02cafba1d0b1d557529e5259161f558cae95117df8cae996c30486877c0e5aff96d1e8100341bfb674c20 WHIRLPOOL 553fa0b7fb2e142b984a5be6eff1a4e6e89ea2e78a3e7081441d88a498d2aa2bb5cd5e90456656713a646a7f82875fa79d7b9fa62c66ce9edc084f995f936c61
DIST votca-csg-1.3.tar.gz 242169 SHA256 eace2b90bcd9318ef257355daf09cbd15b10906c44af95d36454aa969a032cff SHA512 c1314672227feb361991b20cb1511473f23df1f0ff337ddc11319f2261ea19ac5c895de72d1da705026520483eebf1477462ea63275451c9fd1e6bbf4826bd76 WHIRLPOOL 2b48e19705fccc8b6af336536d90fdaf168bda05f327a688e604bd079a69b8b9b816d2d549e510659367e397229fbb433c7c406d462f809e0b4ae98c22a8b81b
DIST votca-csg-1.4.tar.gz 346527 SHA256 713702613b1e51459a18eb1ef83116eb3dbfd25f05d32e5772ee300a674cdc74 SHA512 26318644c7af2dfa1b81242b27ffac98f2180c3a1f05581bc50a00f644cec4b19ffbaf41c9d941a4714171b56ae93fe41f1a663cd0593ae2b0be2da379119d9b WHIRLPOOL 15c7749b1fa003e92e94f4f3f4ac7698667e5a06f739d4e97686aa904b8433a1e1628fae1c1f718bc4bfd2108d515cb12098852a0ebecb213e478874997f3148
DIST votca-csg-manual-1.2.4.pdf 1029132 SHA256 78a68955c96700d432249f712e0601376d5d61fef607860fe32d0ce0dcb70cff SHA512 66b7cf869b2b06d4133b341934fd013717b17c90426f4cdf637ef3bb6119e9f6b67cbde56b7f6b6c777dba9fb311df42dd34d8fe23331f1656439acb541d81bf WHIRLPOOL 629e0e6a8900bb7e4a96b7e1020f86ccacd5a7e7258a493d565c94986a0907371a37d45bf499517a74ad29cf2b606965746e0d90b6be91777f2b0a85f2781732
DIST votca-csg-manual-1.3.1.pdf 1266375 SHA256 320060a77739d3c9ca98116edde94468e136b4bbd38970b82c874eed30af4ee8 SHA512 3335309b364cebcba25269c39dc2383e663a6b46111b02120c63d408a6fd9c3361408beb528d664ce6e13311e5ebff4a4c2772cf2f0e668904b1d9e43030d321 WHIRLPOOL 04adb86ffb10e9e0ecd754ab29940468ec32ddd1f6de1796dd2e89a49e0b60df6a4ecbccab60a085e2619fab480bc63dbb4378490ccfc024c8335ceade983955
DIST votca-csg-manual-1.3.pdf 1266541 SHA256 1520f2c18972a2ec5e0a7e847ae294cee1e6fa5682010a314f2e45c264e59cec SHA512 eb5d88f6cba30d9fd8c3cb11cd6c08dd3e717fccdcbef11c3363d4eb36d23000d8bd7b448c0a5311bcaee2b502e50d7aadb0faf7c9a5e5e9c6e1e37b1e09ec7e WHIRLPOOL f411bdc929515594200a636e6f5e3338797ae35dfe8ba3ddb01913cea85973dccca6482a4aa276ce68689a8f7c4c6d47ae448f2e3ce549d3dba35a1d40eeb44d
DIST votca-csg-manual-1.4.pdf 1281983 SHA256 e2e235473a64dc674a373eacaade4922e02a64274c1f28bcf3b443fbf425d1da SHA512 2e1f4a4375d83df9bd357d4d17e79d26a3a31c9177f008de86721427ffc6f43a5000ec840691108b52a8aecf962321ba6363cd975c7445d7230ee5b0b151b3fa WHIRLPOOL 24580fe71202daad3d4f627657c6aa24175df807462e5c03a05de39f5b2ba38a44a51ee7cfc50416795fc4dfbc8041a4360a3dd680ea339464e1097782b71ac9
DIST votca-csg-tutorials-1.2.4.tar.gz 3721034 SHA256 94b10f23f6e49c1279cdeea87dfee9c19b44373c74212340acebc06eb11e0245 SHA512 8d78a6ff02aedf97c2b640714fd7acfb7c4b0d03ec0141fa89f0ba041e1d2ec07477653d92effd4c96a6497271ad58f5c3397e1fc183c1c856285f6f8b5ceaf5 WHIRLPOOL ea0df816d2f26f12271250137b51f42ecc4a16eea622d37833d4dcc299732c413ee9f71a67767957b13ce8b44a96e9b1389bbbbdb66015c4b5c6d577d4483cf1
DIST votca-csg-tutorials-1.3.1.tar.gz 7602667 SHA256 7f283d14bec05cf617f1fb8026ee07af2bb1c517ea5a8526e2f318024cbf7069 SHA512 2475d8c8b40df1307c499387d352bdf2e4beb730978a025be66f8b342eb205020739aad88248e1928a66e0e117a3f7bafa553f2db8089b10a6fca22e0bfbdf54 WHIRLPOOL ab5226903f47c7372580a88df762d13dfbd8bea4299371e75c8b0bfbbd220cb07b2c0bafbc0ccf277b9e937f1448cdf1e91b2e44a7699db1b90469dc9a10086e
DIST votca-csg-tutorials-1.3.tar.gz 7602622 SHA256 ff6ea92b38b41850f2f92ef7533c1365ec6e6cff15d847eace953d7380777654 SHA512 34788d89fe6e989c91bbbb92887942d774b826d30a6423d539c32065ee8cd6a1adad9a2c4f34fa280c26c2342bf007a35019e6bdd0321dfd7a8f13458c7801a3 WHIRLPOOL e28f33294a5e2a432ef62812243f5bc36cb10a261b09b7bb08267a3da14cd601d7c1835264e1390eebc899f54aad8f12c2880a1a2bb5555681c2f89995672275
DIST votca-csg-tutorials-1.4.tar.gz 6348417 SHA256 f5082f57575f09e9a0035f428603946676b251b7cb45b4332ded833be4dca649 SHA512 f3eb28a133ebc04eed07f84d5962943cb9c547c1099638127f15e0015dfdf3f0b25aab4c97d009d6040bf1d69d408cc178edd6e803d33bf1d831e12dca0671c7 WHIRLPOOL da02cda090eb46dd74d6f2bec8adec70ca7a05796ed0d05772133f566e091f794e2d7fa2640ca775e249248624d0f022212444fa3425c3f715a4dea94a300225

62
sci-chemistry/votca-csg/files/votca-csg-1.3-cmake-3.4.patch
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@@ -1,62 +0,0 @@
From 34d55f6d771bcf026f453457f45d787391910598 Mon Sep 17 00:00:00 2001
From: Christoph Junghans <junghans@votca.org>
Date: Tue, 2 Feb 2016 13:56:50 -0700
Subject: [PATCH] cmake: fixed CheckCXXLibraryExists() with >=cmake-3.4
---
CMakeModules/CheckCXXLibraryExists.cmake | 6 +-----
CMakeModules/CheckFunctionExists.cpp | 23 +++++++++++++++++++++++
2 files changed, 24 insertions(+), 5 deletions(-)
create mode 100644 CMakeModules/CheckFunctionExists.cpp
diff --git a/CMakeModules/CheckCXXLibraryExists.cmake b/CMakeModules/CheckCXXLibraryExists.cmake
index 9c76fe2..d84aea7 100644
--- a/CMakeModules/CheckCXXLibraryExists.cmake
+++ b/CMakeModules/CheckCXXLibraryExists.cmake
@@ -54,13 +54,9 @@ macro(CHECK_CXX_LIBRARY_EXISTS LIBRARY FUNCTION LOCATION VARIABLE)
set(CHECK_LIBRARY_EXISTS_LIBRARIES
${CHECK_LIBRARY_EXISTS_LIBRARIES} ${CMAKE_REQUIRED_LIBRARIES})
endif()
- if(NOT EXISTS ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CheckFunctionExists.cpp)
- file(COPY ${CMAKE_ROOT}/Modules/CheckFunctionExists.c DESTINATION ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY})
- file(RENAME ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CheckFunctionExists.c ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CheckFunctionExists.cpp)
- endif()
try_compile(${VARIABLE}
${CMAKE_BINARY_DIR}
- ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CheckFunctionExists.cpp
+ ${CMAKE_CURRENT_SOURCE_DIR}/CMakeModules/CheckFunctionExists.cpp
COMPILE_DEFINITIONS ${CMAKE_REQUIRED_DEFINITIONS}
LINK_LIBRARIES ${CHECK_LIBRARY_EXISTS_LIBRARIES}
CMAKE_FLAGS
diff --git a/CMakeModules/CheckFunctionExists.cpp b/CMakeModules/CheckFunctionExists.cpp
new file mode 100644
index 0000000..607b3e8
--- /dev/null
+++ b/CMakeModules/CheckFunctionExists.cpp
@@ -0,0 +1,23 @@
+#ifdef CHECK_FUNCTION_EXISTS
+
+char CHECK_FUNCTION_EXISTS();
+#ifdef __CLASSIC_C__
+int main(){
+ int ac;
+ char*av[];
+#else
+int main(int ac, char*av[]){
+#endif
+ CHECK_FUNCTION_EXISTS();
+ if(ac > 1000)
+ {
+ return *av[0];
+ }
+ return 0;
+}
+
+#else /* CHECK_FUNCTION_EXISTS */
+
+# error "CHECK_FUNCTION_EXISTS has to specify the function"
+
+#endif /* CHECK_FUNCTION_EXISTS */
--
2.7.3

90
sci-chemistry/votca-csg/votca-csg-1.2.4-r1.ebuild
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@@ -1,90 +0,0 @@
# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=5
inherit bash-completion-r1 cmake-utils multilib
IUSE="doc examples extras +gromacs"
PDEPEND="extras? ( =sci-chemistry/votca-csgapps-${PV} )"
if [ "${PV}" != "9999" ]; then
SRC_URI="https://github.com/votca/downloads/raw/master/${P}.tar.gz
doc? ( https://github.com/votca/downloads/raw/master/${PN}-manual-${PV}.pdf )
examples? ( https://github.com/votca/downloads/raw/master/${PN}-tutorials-${PV}.tar.gz )"
fi
DESCRIPTION="Votca coarse-graining engine"
HOMEPAGE="http://www.votca.org"
LICENSE="Apache-2.0"
SLOT="0"
KEYWORDS="amd64 x86 ~amd64-linux ~x86-macos"
#perl is only used for scripts
RDEPEND="~sci-libs/votca-tools-${PV}
gromacs? ( <sci-chemistry/gromacs-5.1:= )
dev-lang/perl
app-shells/bash:0"
DEPEND="${RDEPEND}
doc? ( >=app-doc/doxygen-1.7.6.1[dot] )
>=app-text/txt2tags-2.5
virtual/pkgconfig"
DOCS=(README NOTICE ChangeLog)
src_configure() {
local GMX_DEV="OFF" GMX_DOUBLE="OFF" extra
if use gromacs; then
has_version ">=sci-chemistry/gromacs-5" && GMX_DEV="ON"
has_version sci-chemistry/gromacs[double-precision] && GMX_DOUBLE="ON"
fi
#to create man pages, build tree binaries are executed (bug #398437)
[[ ${CHOST} = *-darwin* ]] && \
extra+=" -DCMAKE_BUILD_WITH_INSTALL_RPATH=OFF"
mycmakeargs=(
$(cmake-utils_use_with gromacs GMX)
-DWITH_GMX_DEVEL="${GMX_DEV}"
-DGMX_DOUBLE="${GMX_DOUBLE}"
${extra}
-DWITH_RC_FILES=OFF
-DEXTERNAL_BOOST=ON
-DLIB=$(get_libdir)
)
cmake-utils_src_configure
}
src_install() {
cmake-utils_src_install
newbashcomp scripts/csg-completion.bash csg_call
for i in "${ED}"/usr/bin/csg_*; do
[[ ${i} = *csg_call ]] && continue
bashcomp_alias csg_call "${i##*/}"
done
if use doc; then
if [ -n "${PV##*9999}" ]; then
dodoc "${DISTDIR}/${PN}-manual-${PV}.pdf"
fi
cd "${CMAKE_BUILD_DIR}" || die
cd share/doc || die
doxygen || die
dohtml -r html/*
fi
if use examples && [ -n "${PV##*9999}" ]; then
insinto "/usr/share/doc/${PF}/tutorials"
docompress -x "/usr/share/doc/${PF}/tutorials"
doins -r "${WORKDIR}/${PN}-tutorials-${PV}"/*
fi
}
pkg_postinst() {
einfo
einfo "Please read and cite:"
einfo "VOTCA, J. Chem. Theory Comput. 5, 3211 (2009). "
einfo "http://dx.doi.org/10.1021/ct900369w"
einfo
}

115
sci-chemistry/votca-csg/votca-csg-1.3-r1.ebuild
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@@ -1,115 +0,0 @@
# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=6
CMAKE_MAKEFILE_GENERATOR="ninja"
inherit bash-completion-r1 cmake-utils multilib
IUSE="doc examples extras +gromacs hdf5"
PDEPEND="extras? ( =sci-chemistry/${PN}apps-${PV} )"
if [ "${PV}" != "9999" ]; then
SRC_URI="https://github.com/${PN/-//}/archive/v${PV}.tar.gz -> ${P}.tar.gz
doc? ( https://github.com/${PN/-//}-manual/releases/download/v${PV}/${PN}-manual-${PV}.pdf )
examples? ( https://github.com/${PN/-//}-tutorials/archive/v${PV}.tar.gz -> ${PN}-tutorials-${PV}.tar.gz )"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-macos"
S="${WORKDIR}/${P#votca-}"
PATCHES=( "${FILESDIR}/${P}-cmake-3.4.patch" )
else
inherit git-r3
EGIT_REPO_URI="git://github.com/${PN/-//}.git https://github.com/${PN/-//}.git"
KEYWORDS=""
fi
DESCRIPTION="Votca coarse-graining engine"
HOMEPAGE="http://www.votca.org"
LICENSE="Apache-2.0"
SLOT="0"
RDEPEND="
=sci-libs/votca-tools-${PV}
gromacs? ( sci-chemistry/gromacs:= )
hdf5? ( sci-libs/hdf5[cxx] )
dev-lang/perl
app-shells/bash:*"
DEPEND="${RDEPEND}
doc? (
app-doc/doxygen[dot]
dev-texlive/texlive-latexextra
virtual/latex-base
dev-tex/pgf
)
>=app-text/txt2tags-2.5
virtual/pkgconfig"
DOCS=( README.md NOTICE CHANGELOG.md )
src_unpack() {
if [[ ${PV} != *9999 ]]; then
default
else
git-r3_src_unpack
if use doc; then
EGIT_REPO_URI="git://github.com/${PN/-//}-manual.git https://github.com/${PN/-//}-manual.git"
EGIT_BRANCH="master"
EGIT_CHECKOUT_DIR="${WORKDIR}/${PN}-manual"\
git-r3_src_unpack
fi
if use examples; then
EGIT_REPO_URI="git://github.com/${PN/-//}-tutorials.git https://github.com/${PN/-//}-tutorials.git"
EGIT_BRANCH="master"
EGIT_CHECKOUT_DIR="${WORKDIR}/${PN#votca-}-tutorials"\
git-r3_src_unpack
fi
fi
}
src_configure() {
mycmakeargs=(
-DWITH_GMX=$(usex gromacs)
-DWITH_H5MD=$(usex hdf5)
-DWITH_RC_FILES=OFF
-DLIB=$(get_libdir)
)
cmake-utils_src_configure
}
src_install() {
cmake-utils_src_install
newbashcomp scripts/csg-completion.bash csg_call
for i in "${ED}"/usr/bin/csg_*; do
[[ ${i} = *csg_call ]] && continue
bashcomp_alias csg_call "${i##*/}"
done
if use doc; then
if [[ ${PV} = *9999* ]]; then
#we need to do that here, because we need an installed version of csg to build the manual
[[ ${CHOST} = *-darwin* ]] && \
emake -C "${WORKDIR}/${PN}"-manual PATH="${PATH}${PATH:+:}${ED}/usr/bin" DYLD_LIBRARY_PATH="${DYLD_LIBRARY_PATH}${DYLD_LIBRARY_PATH:+:}${ED}/usr/$(get_libdir)" \
|| emake -C "${WORKDIR}/${PN}"-manual PATH="${PATH}${PATH:+:}${ED}/usr/bin" LD_LIBRARY_PATH="${LD_LIBRARY_PATH}${LD_LIBRARY_PATH:+:}${ED}/usr/$(get_libdir)"
newdoc "${WORKDIR}/${PN}"-manual/manual.pdf "${PN}-manual-${PV}.pdf"
else
dodoc "${DISTDIR}/${PN}-manual-${PV}.pdf"
fi
cmake-utils_src_make -C "${CMAKE_BUILD_DIR}" html
dodoc -r "${CMAKE_BUILD_DIR}"/share/doc/html
fi
if use examples; then
insinto "/usr/share/doc/${PF}/tutorials"
docompress -x "/usr/share/doc/${PF}/tutorials"
rm -rf "${WORKDIR}/${PN#votca-}"-tutorials*/CMake*
doins -r "${WORKDIR}/${PN#votca-}"-tutorials*/*
fi
}
pkg_postinst() {
einfo
einfo "Please read and cite:"
einfo "VOTCA, J. Chem. Theory Comput. 5, 3211 (2009). "
einfo "http://dx.doi.org/10.1021/ct900369w"
einfo
}

114
sci-chemistry/votca-csg/votca-csg-1.3.1.ebuild
View File

@@ -1,114 +0,0 @@
# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=6
CMAKE_MAKEFILE_GENERATOR="ninja"
inherit bash-completion-r1 cmake-utils multilib
IUSE="doc examples extras +gromacs hdf5"
PDEPEND="extras? ( =sci-chemistry/${PN}apps-${PV} )"
if [ "${PV}" != "9999" ]; then
SRC_URI="https://github.com/${PN/-//}/archive/v${PV}.tar.gz -> ${P}.tar.gz
doc? ( https://github.com/${PN/-//}-manual/releases/download/v${PV}/${PN}-manual-${PV}.pdf )
examples? ( https://github.com/${PN/-//}-tutorials/archive/v${PV}.tar.gz -> ${PN}-tutorials-${PV}.tar.gz )"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-macos"
S="${WORKDIR}/${P#votca-}"
else
inherit git-r3
EGIT_REPO_URI="git://github.com/${PN/-//}.git https://github.com/${PN/-//}.git"
KEYWORDS=""
fi
DESCRIPTION="Votca coarse-graining engine"
HOMEPAGE="http://www.votca.org"
LICENSE="Apache-2.0"
SLOT="0"
RDEPEND="
=sci-libs/votca-tools-${PV}
gromacs? ( sci-chemistry/gromacs:= )
hdf5? ( sci-libs/hdf5[cxx] )
dev-lang/perl
app-shells/bash:*"
DEPEND="${RDEPEND}
doc? (
app-doc/doxygen[dot]
dev-texlive/texlive-latexextra
virtual/latex-base
dev-tex/pgf
)
>=app-text/txt2tags-2.5
virtual/pkgconfig"
DOCS=( README.md NOTICE CHANGELOG.md )
src_unpack() {
if [[ ${PV} != *9999 ]]; then
default
else
git-r3_src_unpack
if use doc; then
EGIT_REPO_URI="git://github.com/${PN/-//}-manual.git https://github.com/${PN/-//}-manual.git"
EGIT_BRANCH="master"
EGIT_CHECKOUT_DIR="${WORKDIR}/${PN}-manual"\
git-r3_src_unpack
fi
if use examples; then
EGIT_REPO_URI="git://github.com/${PN/-//}-tutorials.git https://github.com/${PN/-//}-tutorials.git"
EGIT_BRANCH="master"
EGIT_CHECKOUT_DIR="${WORKDIR}/${PN#votca-}-tutorials"\
git-r3_src_unpack
fi
fi
}
src_configure() {
mycmakeargs=(
-DWITH_GMX=$(usex gromacs)
-DWITH_H5MD=$(usex hdf5)
-DWITH_RC_FILES=OFF
-DLIB=$(get_libdir)
)
cmake-utils_src_configure
}
src_install() {
cmake-utils_src_install
newbashcomp scripts/csg-completion.bash csg_call
for i in "${ED}"/usr/bin/csg_*; do
[[ ${i} = *csg_call ]] && continue
bashcomp_alias csg_call "${i##*/}"
done
if use doc; then
if [[ ${PV} = *9999* ]]; then
#we need to do that here, because we need an installed version of csg to build the manual
[[ ${CHOST} = *-darwin* ]] && \
emake -C "${WORKDIR}/${PN}"-manual PATH="${PATH}${PATH:+:}${ED}/usr/bin" DYLD_LIBRARY_PATH="${DYLD_LIBRARY_PATH}${DYLD_LIBRARY_PATH:+:}${ED}/usr/$(get_libdir)" \
|| emake -C "${WORKDIR}/${PN}"-manual PATH="${PATH}${PATH:+:}${ED}/usr/bin" LD_LIBRARY_PATH="${LD_LIBRARY_PATH}${LD_LIBRARY_PATH:+:}${ED}/usr/$(get_libdir)"
newdoc "${WORKDIR}/${PN}"-manual/manual.pdf "${PN}-manual-${PV}.pdf"
else
dodoc "${DISTDIR}/${PN}-manual-${PV}.pdf"
fi
cmake-utils_src_make -C "${CMAKE_BUILD_DIR}" html
dodoc -r "${CMAKE_BUILD_DIR}"/share/doc/html
fi
if use examples; then
insinto "/usr/share/doc/${PF}/tutorials"
docompress -x "/usr/share/doc/${PF}/tutorials"
rm -rf "${WORKDIR}/${PN#votca-}"-tutorials*/CMake*
doins -r "${WORKDIR}/${PN#votca-}"-tutorials*/*
fi
}
pkg_postinst() {
einfo
einfo "Please read and cite:"
einfo "VOTCA, J. Chem. Theory Comput. 5, 3211 (2009). "
einfo "http://dx.doi.org/10.1021/ct900369w"
einfo
}