mirror of
https://github.com/gentoo-mirror/gentoo.git
synced 2026-08-06 00:48:18 -07:00
David Seifert
@@ -1,3 +1,2 @@
|
||||
DIST R-4.2.0.tar.gz 37585694 BLAKE2B 5ba4d3b9397e92b72af729d88ff562655e0dd7c547bd371638aa76d4f1701f4f8a7911d500cf4f10d87b62457f8f8ce7a946d893477ceb7268b06bd59bc10f3d SHA512 99e71dad00b63e44bfcb8dc9539ff1951809112882d9ee7e06a4e99bce2e6ceac24e8348fd598c21e6d5ab0e0629a85170cde208bfa8145af91c398ac4ef7bcd
|
||||
DIST R-4.2.1.tar.gz 37601544 BLAKE2B b898262a05c92e125c36a661a89be34b1698177832002f7aa21ccfcf0b30a06481e2154eea9e77a94b1ad8ca35c7bc4aead2be99b862dca7450acee1bec6a99f SHA512 c1baf46d22304c425dde79301183f80f99f2752300137b0b6f902c3e55e2419d5e9185c97de6e3c840a38f6345a6c334aa24161656d4a7f6fa01570390f1122f
|
||||
DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
|
||||
|
||||
@@ -1,256 +0,0 @@
|
||||
# Copyright 1999-2022 Gentoo Authors
|
||||
# Distributed under the terms of the GNU General Public License v2
|
||||
|
||||
EAPI=8
|
||||
|
||||
inherit bash-completion-r1 autotools flag-o-matic fortran-2 toolchain-funcs
|
||||
|
||||
# latest git commit for R bash completion: https://github.com/deepayan/rcompletion
|
||||
BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
|
||||
|
||||
DESCRIPTION="Language and environment for statistical computing and graphics"
|
||||
HOMEPAGE="https://www.r-project.org/"
|
||||
SRC_URI="
|
||||
mirror://cran/src/base/R-4/${P}.tar.gz
|
||||
https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
|
||||
|
||||
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
|
||||
SLOT="0"
|
||||
KEYWORDS="amd64 arm64 ~hppa ~ia64 sparc x86 ~amd64-linux ~x86-linux"
|
||||
IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
|
||||
|
||||
REQUIRED_USE="
|
||||
png? ( || ( cairo X ) )
|
||||
jpeg? ( || ( cairo X ) )
|
||||
tiff? ( || ( cairo X ) )"
|
||||
RESTRICT="
|
||||
minimal? ( test )
|
||||
!test? ( test )"
|
||||
|
||||
# At least one package installation in the test suite requires TeX,
|
||||
# and will fail without it (bug #718056).
|
||||
BDEPEND="
|
||||
virtual/pkgconfig
|
||||
doc? (
|
||||
virtual/latex-base
|
||||
dev-texlive/texlive-fontsrecommended
|
||||
)
|
||||
test? ( virtual/latex-base )"
|
||||
DEPEND="
|
||||
app-arch/bzip2
|
||||
app-arch/xz-utils
|
||||
app-text/ghostscript-gpl
|
||||
dev-libs/libpcre2:=
|
||||
>=dev-libs/tre-0.8.0_p20210321[approx]
|
||||
net-libs/libtirpc
|
||||
net-misc/curl
|
||||
virtual/blas
|
||||
sys-libs/zlib[minizip]
|
||||
|| (
|
||||
sys-apps/coreutils
|
||||
app-misc/realpath
|
||||
)
|
||||
cairo? (
|
||||
x11-libs/cairo:=[X=]
|
||||
x11-libs/pango:=
|
||||
)
|
||||
icu? ( dev-libs/icu:= )
|
||||
jpeg? ( media-libs/libjpeg-turbo:= )
|
||||
lapack? ( virtual/lapack )
|
||||
perl? ( dev-lang/perl )
|
||||
png? ( media-libs/libpng:= )
|
||||
readline? ( sys-libs/readline:= )
|
||||
tiff? ( media-libs/tiff:= )
|
||||
tk? ( dev-lang/tk:= )
|
||||
X? (
|
||||
x11-libs/libXmu
|
||||
x11-libs/libXt
|
||||
x11-misc/xdg-utils
|
||||
)"
|
||||
RDEPEND="${DEPEND}
|
||||
java? ( >=virtual/jre-1.8:* )"
|
||||
|
||||
PATCHES=(
|
||||
"${FILESDIR}"/${PN}-3.4.1-parallel.patch
|
||||
"${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch
|
||||
"${FILESDIR}"/${PN}-3.6.2-no-LDFLAGS-in-libR-pkg-config.patch
|
||||
"${FILESDIR}"/${PN}-3.6.2-no-gzip-doc.patch
|
||||
)
|
||||
|
||||
pkg_pretend() {
|
||||
[[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
|
||||
}
|
||||
|
||||
pkg_setup() {
|
||||
if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
|
||||
tc-check-openmp
|
||||
FORTRAN_NEED_OPENMP=1
|
||||
fi
|
||||
|
||||
fortran-2_pkg_setup
|
||||
|
||||
# avoid using existing R installation
|
||||
unset R_HOME
|
||||
}
|
||||
|
||||
src_prepare() {
|
||||
default
|
||||
|
||||
# fix packages.html for doc (gentoo bug #205103)
|
||||
sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
|
||||
-i src/library/tools/R/Rd.R || die
|
||||
|
||||
# fix Rscript path when installed (gentoo bug #221061)
|
||||
sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EPREFIX}/usr/$(get_libdir)/${PN}\"':" \
|
||||
-i src/unix/Makefile.in || die "sed unix Makefile failed"
|
||||
|
||||
# fix HTML links to manual (gentoo bug #273957)
|
||||
sed -e 's:\.\./manual/:manual/:g' \
|
||||
-i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
|
||||
|
||||
# Disable this test until it passes again,
|
||||
# https://bugs.r-project.org/show_bug.cgi?id=18338
|
||||
sed -e 's/ reg-packages.R / /' \
|
||||
-i tests/Makefile.common || die
|
||||
|
||||
use lapack && \
|
||||
export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
|
||||
|
||||
if use X; then
|
||||
export R_BROWSER="$(type -p xdg-open)"
|
||||
export R_PDFVIEWER="$(type -p xdg-open)"
|
||||
fi
|
||||
use perl && \
|
||||
export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
|
||||
|
||||
# don't search /usr/local
|
||||
sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
|
||||
|
||||
# Fix for Darwin (macOS)
|
||||
if use prefix; then
|
||||
if [[ ${CHOST} == *-darwin* ]] ; then
|
||||
sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
|
||||
-e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
|
||||
-e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
|
||||
-e "/SHLIB_EXT/s/\.so/.dylib/" \
|
||||
-i configure.ac || die
|
||||
# sort of "undo" 2.14.1-rmath-shared.patch
|
||||
sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EPREFIX}/usr/$(get_libdir)/libRmath.dylib:" \
|
||||
-i src/nmath/standalone/Makefile.in || die
|
||||
else
|
||||
append-ldflags -Wl,-rpath="${EPREFIX}/usr/$(get_libdir)/R/lib"
|
||||
fi
|
||||
fi
|
||||
|
||||
AT_M4DIR=m4 eautoreconf
|
||||
}
|
||||
|
||||
src_configure() {
|
||||
filter-ldflags -Wl,-Bdirect -Bdirect
|
||||
|
||||
econf \
|
||||
--enable-byte-compiled-packages \
|
||||
--enable-R-shlib \
|
||||
--disable-R-framework \
|
||||
--disable-R-static-lib \
|
||||
--with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
|
||||
rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
|
||||
--with-system-tre \
|
||||
$(use_enable java) \
|
||||
$(use_enable lto lto R) \
|
||||
$(use_enable nls) \
|
||||
$(use_enable openmp) \
|
||||
$(use_enable profile R-profiling) \
|
||||
$(use_enable profile memory-profiling) \
|
||||
$(use_with cairo) \
|
||||
$(use_with icu ICU) \
|
||||
$(use_with jpeg jpeglib) \
|
||||
$(use_with lapack) \
|
||||
$(use_with !minimal recommended-packages) \
|
||||
$(use_with png libpng) \
|
||||
$(use_with readline) \
|
||||
$(use_with tiff libtiff) \
|
||||
$(use_with tk tcltk) \
|
||||
$(use_with tk tk-config "${ESYSROOT}"/usr/$(get_libdir)/tkConfig.sh) \
|
||||
$(use_with tk tcl-config "${ESYSROOT}"/usr/$(get_libdir)/tclConfig.sh) \
|
||||
$(use_with X x)
|
||||
}
|
||||
|
||||
src_compile() {
|
||||
export VARTEXFONTS="${T}"/fonts
|
||||
emake AR="$(tc-getAR)"
|
||||
emake -C src/nmath/standalone shared AR="$(tc-getAR)"
|
||||
use doc && emake info pdf
|
||||
}
|
||||
|
||||
src_install() {
|
||||
default
|
||||
emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
|
||||
|
||||
if use doc; then
|
||||
emake DESTDIR="${D}" install-info install-pdf
|
||||
dosym ../manual /usr/share/doc/${PF}/html/manual
|
||||
fi
|
||||
|
||||
newenvd - 99R <<-_EOF_
|
||||
LDPATH=${EPREFIX}/usr/$(get_libdir)/${PN}/lib
|
||||
R_HOME=${EPREFIX}/usr/$(get_libdir)/${PN}
|
||||
_EOF_
|
||||
|
||||
newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
|
||||
# The buildsystem has a different understanding of install_names than
|
||||
# we require. Since it builds modules like shared objects (wrong), many
|
||||
# objects (all modules) get an incorrect install_name. Fixing the build
|
||||
# system here is not really trivial.
|
||||
if [[ ${CHOST} == *-darwin* ]] ; then
|
||||
local mod
|
||||
pushd "${ED}"/usr/$(get_libdir)/R >/dev/null || die
|
||||
for mod in $(find . -name "*.dylib") ; do
|
||||
mod=${mod#./}
|
||||
install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \
|
||||
"${mod}"
|
||||
done
|
||||
popd >/dev/null || die
|
||||
fi
|
||||
|
||||
# Users are encouraged to access some of the the R documentation
|
||||
# interactively, through functions like "contributors()" that
|
||||
# tries to open the "AUTHORS" file. Other files can be accessed
|
||||
# by name with RShowDoc(), and the documentation for e.g. license()
|
||||
# and RShowDoc() suggests a few of these names. Here we try to
|
||||
# collect as many names as possible that a user might actually
|
||||
# try to view through R, because if we don't decompress them,
|
||||
# then R doesn't know what to do with 'em. Bug #556706.
|
||||
local INTERACTIVE_DOCS=(
|
||||
AUTHORS
|
||||
COPYING
|
||||
FAQ
|
||||
NEWS
|
||||
THANKS
|
||||
)
|
||||
|
||||
# Other data sources that are shipped as "documentation," but which
|
||||
# need to be accessible via their original unmolested filenames.
|
||||
local INTERACTIVE_DATA=(
|
||||
BioC_mirrors.csv
|
||||
CRAN_mirrors.csv
|
||||
KEYWORDS.db
|
||||
NEWS.rds
|
||||
)
|
||||
|
||||
local f NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" )
|
||||
|
||||
for f in "${NOCOMPRESS_DOCS[@]}"; do
|
||||
docompress -x "/usr/share/doc/${PF}/${f}"
|
||||
done
|
||||
|
||||
# Finally, an extra copy of this started showing up at some point...
|
||||
rm "${ED}/usr/$(get_libdir)/R/COPYING" || die
|
||||
}
|
||||
|
||||
pkg_postinst() {
|
||||
if use java; then
|
||||
einfo "Re-initializing java paths for ${P}"
|
||||
R CMD javareconf
|
||||
fi
|
||||
}
|
||||
Reference in New Issue
Block a user