sci-physics/espresso: drop 4.1.3

Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>

sci-physics/espresso/Manifest

@@ -1,2 +1 @@
-DIST espresso-4.1.3.tar.gz 16947336 BLAKE2B 14d3513eda87f62a8473a0cac0c273b3590bf78ed48b96e76d10c106713f7bbd7d37de951bd3d9210062b34c02bd83a68f3aaf1ca8215ed1dcde590e4e99b113 SHA512 1fe82683eddb7bfd9bae6e446b0f42a50087d755995963905cd419473ad17b204f20049d0cf4af9264898dd6fee36f02744b38fa45cd0e33086374cf2aebd934
 DIST espresso-4.2.0.tar.gz 14000445 BLAKE2B 79de0e364cd932e534b0e1ee9433ae90e4deeb1ade262aa6877a30c8656f03155ca77b8feafdd5607f83e36ee4f47ad7ec28be353bc3358216a9c9f8c0902323 SHA512 b80afb1bef57911fd79b88378a5b2e31b07a18d415fe17fcd5ed28fb448eeca5922f98af8df42117e9e869645765d55ecfb3aae615fa6a53c915f7d8a63081c5

sci-physics/espresso/espresso-4.1.3.ebuild

@@ -1,122 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python3_9 )
-CMAKE_MAKEFILE_GENERATOR="emake"
-
-inherit cmake cuda python-single-r1 savedconfig
-
-DESCRIPTION="Extensible Simulation Package for Research on Soft matter"
-HOMEPAGE="http://espressomd.org"
-
-if [[ ${PV} = 9999 ]]; then
-	EGIT_REPO_URI="https://github.com/${PN}md/${PN}.git"
-	EGIT_BRANCH="python"
-	inherit git-r3
-else
-	SRC_URI="https://github.com/${PN}md/${PN}/releases/download/${PV}/${P}.tar.gz"
-	KEYWORDS="~amd64 ~x86 ~amd64-linux"
-fi
-
-LICENSE="GPL-3"
-SLOT="0"
-IUSE="cuda doc examples +fftw +hdf5 test"
-RESTRICT="!test? ( test )"
-
-REQUIRED_USE="
-	${PYTHON_REQUIRED_USE}"
-
-RDEPEND="
-	${PYTHON_DEPS}
-	$(python_gen_cond_dep '
-		>=dev-python/cython-0.26.1[${PYTHON_USEDEP}]
-		dev-python/numpy[${PYTHON_USEDEP}]
-	')
-	cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 )
-	fftw? ( sci-libs/fftw:3.0 )
-	dev-libs/boost:=[mpi]
-	hdf5? ( sci-libs/hdf5:=[mpi] )"
-
-DEPEND="${RDEPEND}
-	doc? (
-		app-doc/doxygen[dot]
-		dev-texlive/texlive-latexextra
-		virtual/latex-base )"
-
-DOCS=( AUTHORS NEWS README ChangeLog )
-
-S="${WORKDIR}/${PN}"
-
-PATCHES=(
-	"${FILESDIR}"/${P}-gcc-11.patch
-)
-
-src_prepare() {
-	use cuda && cuda_src_prepare
-	cmake_src_prepare
-}
-
-src_configure() {
-	local mycmakeargs=(
-		-DWITH_CUDA=$(usex cuda)
-		-DPYTHON_EXECUTABLE="${PYTHON}"
-		-DWITH_TESTS=$(usex test)
-		-DINSTALL_PYPRESSO=OFF
-		-DCMAKE_DISABLE_FIND_PACKAGE_FFTW3=$(usex !fftw)
-		-DWITH_HDF5=$(usex hdf5)
-		-DCMAKE_DISABLE_FIND_PACKAGE_HDF5=$(usex !hdf5)
-		-DCMAKE_SKIP_RPATH=YES
-	)
-	cmake_src_configure
-}
-
-src_compile() {
-	cmake_src_compile
-	use doc && cmake_build doxygen
-	[[ ${PV} = 9999 ]] && use doc && cmake_build ug dg tutorials
-}
-
-src_install() {
-	local i docdir="${S}"
-
-	cmake_src_install
-
-	python_optimize
-
-	insinto /usr/share/${PN}/
-	doins "${BUILD_DIR}/myconfig-sample.hpp"
-
-	save_config "${BUILD_DIR}/src/config/myconfig-final.hpp"
-
-	if use doc; then
-		[[ ${PV} = 9999 ]] && docdir="${BUILD_DIR}"
-		newdoc "${docdir}"/doc/dg/dg.pdf developer_guide.pdf
-		newdoc "${docdir}"/doc/ug/ug.pdf user_guide.pdf
-		for i in "${docdir}/doc/tutorials/python"/*/[0-9]*.pdf; do
-			newdoc "${i}" "tutorial_${i##*/}"
-		done
-		dodoc -r "${BUILD_DIR}/doc/doxygen/html"
-	fi
-
-	if use examples; then
-		insinto "/usr/share/${PN}/examples/python"
-		doins -r samples/${i}/.
-	fi
-}
-
-pkg_postinst() {
-	echo
-	elog "Please read and cite:"
-	elog "ESPResSo, Comput. Phys. Commun. 174(9) ,704, 2006."
-	elog "https://dx.doi.org/10.1016/j.cpc.2005.10.005"
-	echo
-	elog "If you need more features, change"
-	elog "/etc/portage/savedconfig/${CATEGORY}/${PF}"
-	elog "and reemerge with USE=savedconfig"
-	echo
-	elog "For a full feature list see:"
-	elog "/usr/share/${PN}/myconfig-sample.hpp"
-	echo
-}

sci-physics/espresso/files/espresso-4.1.3-gcc-11.patch

@@ -1,37 +0,0 @@
-https://src.fedoraproject.org/rpms/espresso/blob/f34/f/espresso-gcc11.patch
---- a/src/core/communication.hpp
-+++ b/src/core/communication.hpp
-@@ -49,6 +49,8 @@
-  *  to \ref CALLBACK_LIST.
-  */
- 
-+#include <cstddef>
-+
- #include "MpiCallbacks.hpp"
- 
- /* Includes needed by callbacks. */
-diff --git a/src/script_interface/ParallelScriptInterface.hpp b/src/script_interface/ParallelScriptInterface.hpp
-index c33e67d..02ad815 100644
---- a/src/script_interface/ParallelScriptInterface.hpp
-+++ b/src/script_interface/ParallelScriptInterface.hpp
-@@ -23,6 +23,7 @@
- #define SCRIPT_INTERFACE_PARALLEL_SCRIPT_INTERFACE_HPP
- 
- #include <utility>
-+#include <limits>
- 
- #include "MpiCallbacks.hpp"
- #include "ScriptInterface.hpp"
-diff --git a/src/utils/include/utils/NumeratedContainer.hpp b/src/utils/include/utils/NumeratedContainer.hpp
-index 1d99098..1191a79 100644
---- a/src/utils/include/utils/NumeratedContainer.hpp
-+++ b/src/utils/include/utils/NumeratedContainer.hpp
-@@ -24,6 +24,7 @@
-  *  Keep an enumerated list of T objects, managed by the class.
-  */
- 
-+#include <cstddef>
- #include <cassert>
- #include <set>
- #include <unordered_map>
-