gentoo-mirror/gentoo
1
0
Fork 0
mirror of https://github.com/gentoo-mirror/gentoo.git synced 2026-09-24 04:59:14 -07:00
Code Issues Projects Releases Wiki Activity

sci-biology/express: Fix building with GCC-6

Browse Source 
Bug: https://bugs.gentoo.org/show_bug.cgi?id=610692
Package-Manager: Portage-2.3.6, Repoman-2.3.2
Closes: https://github.com/gentoo/gentoo/pull/5179
This commit is contained in:
Peter Levine
2017-07-22 21:31:58 -04:00
committed by David Seifert
parent 5b992a86ad
commit 61d3ecd7b4
2 changed files with 21 additions and 1 deletions
Download Patch File Download Diff File Expand all files Collapse all files

3
sci-biology/express/express-1.5.1.ebuild
View File

@@ -1,4 +1,4 @@
# Copyright 1999-2014 Gentoo Foundation
# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
@@ -26,6 +26,7 @@ S="${WORKDIR}/${P}-src"
PATCHES=(
"${FILESDIR}"/${P}-buildsystem.patch
"${FILESDIR}"/${P}-gcc6.patch
)
src_configure() {

19
sci-biology/express/files/express-1.5.1-gcc6.patch Normal file
View File

@@ -0,0 +1,19 @@
Bug: https://bugs.gentoo.org/610692
--- a/src/targets.cpp
+++ b/src/targets.cpp
@@ -113,12 +113,12 @@
double ll = LOG_1;
double tot_mass = mass(with_pseudo);
- double tot_eff_len = cached_effective_length(lib.bias_table);
+ double tot_eff_len = cached_effective_length(static_cast<bool>(lib.bias_table));
if (neighbors) {
foreach (const Target* neighbor, *neighbors) {
tot_mass = log_add(tot_mass, neighbor->mass(with_pseudo));
tot_eff_len = log_add(tot_eff_len,
- neighbor->cached_effective_length(lib.bias_table));
+ neighbor->cached_effective_length(static_cast<bool>(lib.bias_table)));
}
}
ll += tot_mass - tot_eff_len;