mirror of
https://github.com/gentoo-mirror/gentoo.git
synced 2026-11-09 18:47:16 -08:00
sci-libs/scipy: Bump to 1.5.2
Signed-off-by: Michał Górny <mgorny@gentoo.org>
This commit is contained in:
Michał Górny
@@ -10,3 +10,6 @@ DIST scipy-1.5.0.tar.gz 25573194 BLAKE2B f505e5f0627687aeefe0af0886b03eead9f6426
|
||||
DIST scipy-1.5.1-html.zip 23582280 BLAKE2B 97b256bc7367836f35ce7e0ac47436dd72c1afe249dea1a2f437ea883e74ecb8f5bbe22e20bb804aac66b86fb35e8b4f0e329c44d9d601318ef1accc82e8e850 SHA512 eb0c7736d2bdc9f45926d19f4a22e1168d0f06e21b338cd7e7884af79c7634885350c510251d4cd1629b2a294003e93f8e71bafd8ec64c1aea4d4174c3946597
|
||||
DIST scipy-1.5.1-ref.pdf 33698325 BLAKE2B 6ff0d13474acf2960352580765c86ef54faa9bb616b4b8097665fa3b8a3a6033acb524d5bb76757b23d0ea9550b556293509a91e5cbeb7b0a388ea75d1bec29b SHA512 c0fbebb5dec19aebe7783507ccebf28134227096caad915e1f28f963386a07b1246fa624e4680691809c5ba31a09d3dd6e4f27f9e86f5985f8a7eecb1eea82d3
|
||||
DIST scipy-1.5.1.tar.gz 25575560 BLAKE2B e431a54f1810590b75d0f115bdbcd3c561d0d918664d91654fa4f2583d4d2807deae36b3293be0a5add650fb5d99f744e1d893d369f6053741d863e2826dcc3c SHA512 d46abaaa52e5521d8f3f6d79f58c8473a8649faa01e93d250d2ee19d5778e31c13aaa855bd8f059ddc1424ae13001f15a41f240fa6b0acf3ffd911ea30da1040
|
||||
DIST scipy-1.5.2-html.zip 23166876 BLAKE2B a90d6a2eb25c56147c0c1cccb58cddd230c20cd70dcc5c39b7307acaeac5320ff1c6ed46e3027ec40f604db503a90620cf87212e45f3158c667ec20d95bac649 SHA512 35c675821675844b163eacdaf448173edb78adb5e9f3e438a70809b8b59425a987fd3ed7d6f7863612111ece4a6a36504279ef4492166f5e24a9b2c7ea9d21e7
|
||||
DIST scipy-1.5.2-ref.pdf 33462200 BLAKE2B 5784612eb41221a02520778d72341702a7dd4ee8c0147592e170054107219b03af4ccebe1f5e2a57f90f3b892455f95ec45d8eac8e4a7155e21e9ae0526b302f SHA512 15961b7280eb903d2db7a05915b94b3c298cabf68a6694da217680e23fe621885dd169dc88a033ee001a89bc6e6b13ef787ec61009f6ffe38aeaa2dfb84f8a47
|
||||
DIST scipy-1.5.2.tar.gz 25423944 BLAKE2B 0a4987da0cde4f33bbb0e2be571b59e9064b1c6554c61c1655100abdecfde54d64845cd30c5b3fcac3ae7426572757aa9a66065dd3b48e6e4cdd4d0ea847868e SHA512 45463df30a0f6270d9f4cf52235f31607904a6ae1375e12600e7f1ab2d27b1dc25a6211b49dceb71506be22c756890adaf9f81d9e6be7455def86c9caf0dc923
|
||||
|
||||
@@ -0,0 +1,160 @@
|
||||
# Copyright 1999-2020 Gentoo Authors
|
||||
# Distributed under the terms of the GNU General Public License v2
|
||||
|
||||
EAPI=6
|
||||
|
||||
PYTHON_COMPAT=( python3_{6..9} )
|
||||
PYTHON_REQ_USE="threads(+)"
|
||||
|
||||
DOC_PV=${PV}
|
||||
|
||||
inherit fortran-2 distutils-r1 flag-o-matic multiprocessing toolchain-funcs
|
||||
|
||||
DESCRIPTION="Scientific algorithms library for Python"
|
||||
HOMEPAGE="https://www.scipy.org/"
|
||||
SRC_URI="
|
||||
mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz
|
||||
doc? (
|
||||
https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${PV}.zip -> ${PN}-${DOC_PV}-html.zip
|
||||
https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-ref-${PV}.pdf -> ${PN}-${DOC_PV}-ref.pdf
|
||||
)"
|
||||
|
||||
LICENSE="BSD LGPL-2"
|
||||
SLOT="0"
|
||||
KEYWORDS="~amd64 ~arm ~arm64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x86-macos"
|
||||
IUSE="doc sparse test"
|
||||
RESTRICT="!test? ( test )"
|
||||
|
||||
CDEPEND="
|
||||
>=dev-python/numpy-1.10[lapack,${PYTHON_USEDEP}]
|
||||
sci-libs/arpack:0=
|
||||
virtual/cblas
|
||||
virtual/lapack
|
||||
sparse? ( sci-libs/umfpack:0= )"
|
||||
DEPEND="${CDEPEND}
|
||||
dev-lang/swig
|
||||
>=dev-python/cython-0.29.13[${PYTHON_USEDEP}]
|
||||
>=dev-python/setuptools-36[${PYTHON_USEDEP}]
|
||||
dev-python/pybind11[${PYTHON_USEDEP}]
|
||||
virtual/pkgconfig
|
||||
doc? ( app-arch/unzip )
|
||||
test? (
|
||||
dev-python/nose[${PYTHON_USEDEP}]
|
||||
dev-python/pytest[${PYTHON_USEDEP}]
|
||||
)"
|
||||
RDEPEND="${CDEPEND}
|
||||
dev-python/pillow[${PYTHON_USEDEP}]"
|
||||
|
||||
DOCS=( HACKING.rst.txt THANKS.txt )
|
||||
|
||||
DISTUTILS_IN_SOURCE_BUILD=1
|
||||
|
||||
src_unpack() {
|
||||
default
|
||||
if use doc; then
|
||||
unzip -qo "${DISTDIR}"/${PN}-${DOC_PV}-html.zip -d html || die
|
||||
fi
|
||||
}
|
||||
|
||||
pc_incdir() {
|
||||
$(tc-getPKG_CONFIG) --cflags-only-I $@ | \
|
||||
sed -e 's/^-I//' -e 's/[ ]*-I/:/g' -e 's/[ ]*$//' -e 's|^:||'
|
||||
}
|
||||
|
||||
pc_libdir() {
|
||||
$(tc-getPKG_CONFIG) --libs-only-L $@ | \
|
||||
sed -e 's/^-L//' -e 's/[ ]*-L/:/g' -e 's/[ ]*$//' -e 's|^:||'
|
||||
}
|
||||
|
||||
pc_libs() {
|
||||
$(tc-getPKG_CONFIG) --libs-only-l $@ | \
|
||||
sed -e 's/[ ]-l*\(pthread\|m\)\([ ]\|$\)//g' \
|
||||
-e 's/^-l//' -e 's/[ ]*-l/,/g' -e 's/[ ]*$//' \
|
||||
| tr ',' '\n' | sort -u | tr '\n' ',' | sed -e 's|,$||'
|
||||
}
|
||||
|
||||
python_prepare_all() {
|
||||
# scipy automatically detects libraries by default
|
||||
export {FFTW,FFTW3,UMFPACK}=None
|
||||
use sparse && unset UMFPACK
|
||||
# the missing symbols are in -lpythonX.Y, but since the version can
|
||||
# differ, we just introduce the same scaryness as on Linux/ELF
|
||||
[[ ${CHOST} == *-darwin* ]] \
|
||||
&& append-ldflags -bundle "-undefined dynamic_lookup" \
|
||||
|| append-ldflags -shared
|
||||
[[ -z ${FC} ]] && export FC="$(tc-getFC)"
|
||||
# hack to force F77 to be FC until bug #278772 is fixed
|
||||
[[ -z ${F77} ]] && export F77="$(tc-getFC)"
|
||||
export F90="${FC}"
|
||||
export SCIPY_FCONFIG="config_fc --noopt --noarch"
|
||||
append-fflags -fPIC
|
||||
|
||||
local libdir="${EPREFIX}"/usr/$(get_libdir)
|
||||
cat >> site.cfg <<-EOF || die
|
||||
[blas]
|
||||
include_dirs = $(pc_incdir cblas)
|
||||
library_dirs = $(pc_libdir cblas blas):${libdir}
|
||||
blas_libs = $(pc_libs cblas blas)
|
||||
[lapack]
|
||||
library_dirs = $(pc_libdir lapack):${libdir}
|
||||
lapack_libs = $(pc_libs lapack)
|
||||
EOF
|
||||
cat >> setup.cfg <<-EOF || die
|
||||
[options]
|
||||
zip_safe = False
|
||||
EOF
|
||||
|
||||
# Drop hashes to force rebuild of cython based .c code
|
||||
rm cythonize.dat || die
|
||||
|
||||
# TODO
|
||||
sed -e 's:test_magic_square_sparse_no_presolve:_&:' \
|
||||
-i scipy/optimize/tests/test_linprog.py || die
|
||||
sed -e "s:== 'levy_stable':in ('levy_stable', 'crystalball', 'ncf'):" \
|
||||
-i scipy/stats/tests/test_continuous_basic.py || die
|
||||
|
||||
distutils-r1_python_prepare_all
|
||||
}
|
||||
|
||||
python_configure_all() {
|
||||
# bug 721860
|
||||
test-flag-FC -fallow-argument-mismatch &&
|
||||
append-fflags -fallow-argument-mismatch
|
||||
}
|
||||
|
||||
python_compile() {
|
||||
# FIXME: parallel python building fails, bug #614464
|
||||
export MAKEOPTS=-j1
|
||||
|
||||
${EPYTHON} tools/cythonize.py || die
|
||||
distutils-r1_python_compile \
|
||||
${SCIPY_FCONFIG}
|
||||
}
|
||||
|
||||
python_test() {
|
||||
# fails with bdist_egg. should it be fixed in distutils-r1 eclass?
|
||||
distutils_install_for_testing ${SCIPY_FCONFIG}
|
||||
cd "${TEST_DIR}/lib" || die "no ${TEST_DIR} available"
|
||||
PYTHONPATH=. "${EPYTHON}" -c "
|
||||
import scipy, sys
|
||||
r = scipy.test('fast', verbose=2)
|
||||
sys.exit(0 if r else 1)" || die "Tests fail with ${EPYTHON}"
|
||||
}
|
||||
|
||||
python_install_all() {
|
||||
use doc && \
|
||||
local DOCS=( "${DISTDIR}"/${PN}-${DOC_PV}-ref.pdf ) \
|
||||
local HTML_DOCS=( "${WORKDIR}"/html/. )
|
||||
distutils-r1_python_install_all
|
||||
}
|
||||
|
||||
python_install() {
|
||||
distutils-r1_python_install ${SCIPY_FCONFIG}
|
||||
python_optimize
|
||||
}
|
||||
|
||||
pkg_postinst() {
|
||||
elog "You might want to set the variable SCIPY_PIL_IMAGE_VIEWER"
|
||||
elog "to your prefered image viewer. Example:"
|
||||
elog "\t echo \"export SCIPY_PIL_IMAGE_VIEWER=display\" >> ~/.bashrc"
|
||||
}
|
||||
Reference in New Issue
Block a user