sci-libs/libgenome: treeclean

Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>

profiles/package.mask

@@ -811,13 +811,6 @@ sci-chemistry/votca-csgapps
 sci-chemistry/votca-xtp
 sci-libs/votca-tools
 
-# Michał Górny <mgorny@gentoo.org> (2022-12-21)
-# The mauve project is no longer maintained upstream, and the actual
-# program has been removed from Gentoo in 2016.  These are leftover
-# libraries with no reverse dependencies.  Last bumped in 2009.
-# Removal on 2023-01-20.  Bug #677558.
-sci-libs/libgenome
-
 # Georgy Yakovlev <gyakovlev@gentoo.org> (2022-12-19)
 # This version currently is not compatible with kernel build (yet)
 ~dev-util/bindgen-0.63.0

sci-libs/libgenome/Manifest

@@ -1 +0,0 @@
-DIST libgenome-1.3-r1.tar.bz2 128503 BLAKE2B d64784f8b220fa5bf32a4e22b8884755e38ce03fa9d17fc11cd79dfe662051f5518852631bd5a081ab52f0139434d5571d0dde49ae873297cb52a9153949e478 SHA512 0fd1895d9ea1ac75e4efaeae9abd5241193dba17f91426a5be7b244331ac7939c37d51bb08f8378d64a96573ad38b39e2583a928aadf9421e8b5c17fe217dfd4

sci-libs/libgenome/files/libgenome-1.3-fix-c++14.patch

@@ -1,30 +0,0 @@
-Fix building with C++14, which errors out due to collisions with internal abs() function.
-See also: https://bugs.gentoo.org/show_bug.cgi?id=594372
- 
---- a/libGenome/gnDefs.h
-+++ b/libGenome/gnDefs.h
-@@ -175,13 +175,6 @@
- 
- #define CONTIG_SECTION_SIZE 3
- 
--// some compilers don't have abs() for 64 bit ints
--#if (defined(__GNUG__) && ( __GNUC__ <= 2 )) || defined(__INTEL_COMPILER) || (defined _MSC_VER && defined __cplusplus)
--
--int64 abs( int64 a );
--
--#endif
--
- #ifdef __cplusplus
- namespace genome {
- #endif
---- a/libGenome/Makefile.am
-+++ b/libGenome/Makefile.am
-@@ -29,7 +29,7 @@
- gnGenomeSpec.cpp  gnLocation.cpp  \
- gnRAWSource.cpp gnBaseFeature.cpp gnSEQSource.cpp gnSequence.cpp \
- gnContigSpec.cpp gnSourceHeader.cpp gnException.cpp \
--gnFastTranslator.cpp gnPosSpecificTranslator.cpp gnDefs.cpp
-+gnFastTranslator.cpp gnPosSpecificTranslator.cpp
- 
- library_includedir=$(includedir)/$(GENERIC_LIBRARY_NAME)-$(GENERIC_API_VERSION)/$(GENERIC_LIBRARY_NAME)
- 

sci-libs/libgenome/libgenome-1.3-r1.ebuild

@@ -1,39 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-inherit autotools
-
-DESCRIPTION="Library for sci-biology/mauve"
-HOMEPAGE="http://gel.ahabs.wisc.edu/mauve/"
-SRC_URI="mirror://gentoo/${PF}.tar.bz2"
-
-LICENSE="GPL-2"
-SLOT="0"
-IUSE="doc static-libs"
-KEYWORDS="~amd64 ~x86"
-
-DEPEND="doc? ( app-doc/doxygen )"
-RDEPEND=""
-
-PATCHES=( "${FILESDIR}/${PN}-1.3-fix-c++14.patch" )
-
-src_prepare() {
-	default
-	rm libGenome/gnDefs.cpp || die
-	eautoreconf
-}
-
-src_configure() {
-	econf \
-		--enable-shared \
-		$(use_enable static-libs static)
-}
-
-src_install() {
-	default
-
-	# package provides .pc files
-	find "${D}" -name '*.la' -delete || die
-}

sci-libs/libgenome/metadata.xml

@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="project">
-		<email>sci-biology@gentoo.org</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
-</pkgmetadata>