dev-python/astroscrappy: version bump

Package-Manager: portage-2.3.0

dev-python/astroscrappy/Manifest

@@ -1 +1,2 @@
 DIST astroscrappy-1.0.3.tar.gz 422209 SHA256 843af0ec1fb7439a886f05690a52d96342c3bd505dfdef42e922a66b67a89776 SHA512 2e96e8e62f81c770802a3c7699ca4455c640bb000aa4bffc22149745eed4e7e33cc4b297649020a601ff7fb242c0545cf9391c19ee2687adab26ac494d37dbb2 WHIRLPOOL 8ee318233639617608a4c4aea0a75227317f3ca695430c49882a1396178eb3655bd80169291de2631c752c81d41016dcda85653eb1caa372cfd7c0d49080fd67
+DIST astroscrappy-1.0.5.tar.gz 421910 SHA256 29f6ab8809fb404c369f0a63c74ec72a11fbe872650dd08906caf6ab801c2920 SHA512 bad648140abe3032aa76f43b4c61a15bc49b825bb8333d0e2dc6ba244542e5d6b283824336de82c73aefdfd62b952c9089c3237c913faf17874af13725345064 WHIRLPOOL d3e63f2e4fd352b85095149efa06a3bee11daaab723fbd041a6375772ca2d23b72759a0698d512198cd38086e2a20a5984b9a04346ab2814f455c45f831676fb

dev-python/astroscrappy/astroscrappy-1.0.5.ebuild

@@ -0,0 +1,60 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+PYTHON_COMPAT=( python{2_7,3_4,3_5} )
+
+inherit distutils-r1
+
+DESCRIPTION="Optimized cosmic ray annihilation astropy python module"
+HOMEPAGE="https://github.com/astropy/astroscrappy"
+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+
+LICENSE="BSD"
+SLOT="0"
+IUSE="doc openmp test"
+
+RDEPEND="
+	dev-python/astropy[${PYTHON_USEDEP}]
+	dev-python/astropy-helpers[${PYTHON_USEDEP}]
+	dev-python/numpy[${PYTHON_USEDEP}]
+	sci-libs/scipy[${PYTHON_USEDEP}]"
+
+DEPEND="${RDEPEND}
+	dev-python/cython[${PYTHON_USEDEP}]
+	dev-python/setuptools[${PYTHON_USEDEP}]
+	doc? ( dev-python/sphinx[${PYTHON_USEDEP}] )
+	test? ( dev-python/pytest[${PYTHON_USEDEP}] )"
+
+DOCS=( CHANGES.rst )
+
+PATCHES=(
+	"${FILESDIR}/${PN}-1.0.5-respect-user-flag.patch"
+)
+
+python_prepare_all() {
+	# use astropy-helpers from system
+	sed -i -e '/auto_use/s/True/False/' setup.cfg || die
+	# if the user explicitely does not want openmp, do not forcefully use it
+	if ! use openmp; then
+		sed -e 's/if has_openmp/if False/' \
+			-i astroscrappy/utils/setup_package.py || die
+	fi
+	distutils-r1_python_prepare_all
+}
+
+python_compile_all() {
+	use doc && esetup.py build_sphinx
+}
+
+python_test() {
+	esetup.py test
+}
+
+python_install_all() {
+	use doc && local HTML_DOCS=( docs/_build/html/. )
+	distutils-r1_python_install_all
+}

dev-python/astroscrappy/files/astroscrappy-1.0.5-respect-user-flag.patch

@@ -0,0 +1,36 @@
+From f3acf99e65f58e2ee2f409d33f44a3abb1ba90c4 Mon Sep 17 00:00:00 2001
+From: Sébastien Fabbro <bicatali@gentoo.org>
+Date: Wed, 31 Aug 2016 22:19:12 +0000
+Subject: [PATCH] respect user compiling flags Depending on compilers, -O3
+ -funroll-loops is not the fastest.
+
+---
+ astroscrappy/utils/setup_package.py | 8 ++------
+ 1 file changed, 2 insertions(+), 6 deletions(-)
+
+diff --git a/astroscrappy/utils/setup_package.py b/astroscrappy/utils/setup_package.py
+index 3e1fba2..c271613 100644
+--- a/astroscrappy/utils/setup_package.py
++++ b/astroscrappy/utils/setup_package.py
+@@ -73,16 +73,12 @@ def get_extensions():
+                     sources=med_sources,
+                     include_dirs=include_dirs,
+                     libraries=libraries,
+-                    language="c",
+-                    extra_compile_args=['-g', '-O3', '-funroll-loops',
+-                                        '-ffast-math'])
++                    language="c")
+     ext_im = Extension(name=str("astroscrappy.utils.image_utils"),
+                     sources=im_sources,
+                     include_dirs=include_dirs,
+                     libraries=libraries,
+-                    language="c",
+-                    extra_compile_args=['-g', '-O3', '-funroll-loops',
+-                                        '-ffast-math'])
++                    language="c")
+ 
+     has_openmp, outputs = check_openmp()
+     if has_openmp:
+-- 
+2.9.3
+