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dev-lang/R: add 4.5.2
Signed-off-by: Alfred Wingate <parona@protonmail.com> Part-of: https://github.com/gentoo/gentoo/pull/45011 Closes: https://github.com/gentoo/gentoo/pull/45011 Signed-off-by: Sam James <sam@gentoo.org>
This commit is contained in:
Alfred Wingate
committed by
Sam James
Sam James
parent
bdc6daf0f7
commit
27e3d3af00
@@ -1,4 +1,5 @@
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DIST R-4.4.1.tar.gz 37353459 BLAKE2B 2c44fcab719cc2a2cef4566fd4e6c22386f02827a41045ffa074ca2a6883089275354644bce47c9978ef5c96e7b9b21576e946500746c27dc00946ef3cde4fce SHA512 cc30172227b7d89a9d6e9d65c8622b2042bcbbf3f1b5e36c7460f60958a1a0589980a1867ec9989df2589c1618233f3382d4732700b147361ace3be6680b5643
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DIST R-4.4.3.tar.gz 40234425 BLAKE2B 2a7efdf1841c7bae66a0e8aef07b9e79dec9d2f1b4c32f12640eaf84f99b05ca2846eaf10a5d03e0a7fb6d0a4f00ab16cd84a618ebef7bec29c31bc04458f0db SHA512 2a1d1e5ee2e18c928e2b3e58df372083b4bbd0822863a8441404999209035436e236c8ffe3970827fbf3d765157365800ebb0bb46f361c6abe473ddec30be06f
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DIST R-4.5.0.tar.gz 40466335 BLAKE2B 29ebfab54139320a7da30dfc976e5e210c3536c7be13014210e0ea51529a688962ec0f5298fe82989174ecd1fcec3146aad9c29de3882e8e5bbe0dbeb187c880 SHA512 e32de0115f32c3e44f3a003deae6b35fa0ae1ed951f8a74d815e8a417de0e84547c2ec5386cf965208cc1c81e5d43a3706a15af929d295056201f2ffe6b9d84b
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DIST R-4.5.2.tar.gz 40546249 BLAKE2B 3170906e3043139408209a62ffd62ffea1fbb238e8e2a72d74cb8f2839e00d67339df87b49898be933cfe6440ed904beda9be7bd4d95172fb343677729a2921f SHA512 abc4ff1a1b18a1f480e7bceb3267074e30453b5a571034b4c2a1c53e1650a1bafaf86bc6ca37f117a2e4f6617039dedeedef4ba8743f38720fc70e4bed2ff0a4
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DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
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269
dev-lang/R/R-4.5.2.ebuild
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269
dev-lang/R/R-4.5.2.ebuild
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@@ -0,0 +1,269 @@
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# Copyright 1999-2025 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=8
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inherit bash-completion-r1 autotools flag-o-matic fortran-2 toolchain-funcs
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# latest git commit for R bash completion:
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# https://github.com/deepayan/rcompletion
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BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
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DESCRIPTION="Language and environment for statistical computing and graphics"
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HOMEPAGE="https://www.r-project.org/"
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SRC_URI="
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https://cran.r-project.org/src/base/R-4/${P}.tar.gz
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https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
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LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
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SLOT="0"
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KEYWORDS="~amd64 ~arm64 ~hppa ~loong ~sparc ~x86 ~amd64-linux ~x86-linux ~arm64-macos ~x64-macos"
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IUSE="cairo doc icu java jpeg +libdeflate lto minimal nls openmp perl png prefix profile readline test tiff tk X"
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REQUIRED_USE="
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png? ( || ( cairo X ) )
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jpeg? ( || ( cairo X ) )
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tiff? ( || ( cairo X ) )"
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RESTRICT="
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minimal? ( test )
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!test? ( test )"
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# At least one package installation in the test suite requires TeX,
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# and will fail without it (bug #718056).
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DEPEND="
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app-arch/bzip2
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app-arch/xz-utils
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app-text/ghostscript-gpl
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app-arch/zstd:=
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dev-libs/libpcre2:=
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>=dev-libs/tre-0.8.0_p20210321[approx]
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net-misc/curl
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virtual/minizip:=
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sys-apps/coreutils
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sys-libs/timezone-data
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virtual/blas
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virtual/lapack
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cairo? (
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x11-libs/cairo:=[X=]
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x11-libs/pango:=
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)
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icu? ( dev-libs/icu:= )
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jpeg? ( media-libs/libjpeg-turbo:= )
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kernel_linux? ( net-libs/libtirpc:= )
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libdeflate? ( app-arch/libdeflate )
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perl? ( dev-lang/perl )
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png? ( media-libs/libpng:= )
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readline? ( sys-libs/readline:= )
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tiff? ( media-libs/tiff:= )
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tk? (
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dev-lang/tcl:=
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dev-lang/tk:=
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)
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X? (
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x11-libs/libX11
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x11-libs/libXmu
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x11-libs/libXt
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)"
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RDEPEND="${DEPEND}
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java? ( >=virtual/jre-1.8:* )"
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BDEPEND="
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sys-apps/which
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virtual/pkgconfig
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doc? (
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virtual/latex-base
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dev-texlive/texlive-fontsrecommended
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)
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test? ( virtual/latex-base )"
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PATCHES=(
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"${FILESDIR}"/R-4.3.0-parallel.patch
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"${FILESDIR}"/R-4.3.0-no-LDFLAGS-in-libR-pkg-config.patch
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"${FILESDIR}"/R-4.3.0-no-gzip-doc.patch
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)
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# false positive, the linking step fails (as it should)
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QA_CONFIG_IMPL_DECL_SKIP=( iconvlist )
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pkg_pretend() {
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[[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
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}
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pkg_setup() {
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if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
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tc-check-openmp
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FORTRAN_NEED_OPENMP=1
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fi
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fortran-2_pkg_setup
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# avoid using existing R installation
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unset R_HOME
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}
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src_prepare() {
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default
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# fix packages.html for doc (gentoo bug #205103)
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sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
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-i src/library/tools/R/Rd.R || die
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# fix Rscript path when installed (gentoo bug #221061)
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sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EPREFIX}/usr/$(get_libdir)/${PN}\"':" \
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-i src/unix/Makefile.in || die "sed unix Makefile failed"
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# fix HTML links to manual (gentoo bug #273957)
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sed -e 's:\.\./manual/:manual/:g' \
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-i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
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use perl &&
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export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
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# don't search /usr/local
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sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
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# Fix for Darwin (macOS)
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if use prefix; then
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if [[ ${CHOST} == *-darwin* ]] ; then
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sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
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-e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
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-e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
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-e "/SHLIB_EXT/s/\.so/.dylib/" \
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-i configure.ac || die
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# sort of "undo" 2.14.1-rmath-shared.patch
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sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EPREFIX}/usr/$(get_libdir)/libRmath.dylib:" \
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-i src/nmath/standalone/Makefile.in || die
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else
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append-ldflags -Wl,-rpath="${EPREFIX}/usr/$(get_libdir)/R/lib"
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fi
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fi
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AT_M4DIR=m4 eautoreconf
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}
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src_configure() {
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filter-ldflags -Wl,-Bdirect -Bdirect
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# Avoid automagically finding (incomplete) TL components if
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# USE=-doc where not all required files may be available.
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if ! use doc ; then
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export ac_cv_path_PDFTEX=
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export ac_cv_path_PDFLATEX=
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export ac_cv_path_MAKEINDEX=
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export ac_cv_path_KPSEWHICH=
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fi
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econf \
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--enable-byte-compiled-packages \
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--enable-R-shlib \
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--disable-R-framework \
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--disable-R-static-lib \
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--with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
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--with-lapack="$($(tc-getPKG_CONFIG) --libs lapack)" \
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rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
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--with-system-tre \
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--without-aqua \
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--without-newAccelerate \
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$(use_enable java) \
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$(use_enable lto lto R) \
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$(use_enable nls) \
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$(use_enable openmp) \
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$(use_enable profile R-profiling) \
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$(use_enable profile memory-profiling) \
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$(use_with cairo) \
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$(use_with icu ICU) \
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$(use_with jpeg jpeglib) \
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$(use_with libdeflate libdeflate-compression) \
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$(use_with !minimal recommended-packages) \
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$(use_with png libpng) \
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$(use_with readline) \
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$(use_with tiff libtiff) \
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$(use_with tk tcltk) \
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$(use_with tk tk-config "${ESYSROOT}"/usr/$(get_libdir)/tkConfig.sh) \
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$(use_with tk tcl-config "${ESYSROOT}"/usr/$(get_libdir)/tclConfig.sh) \
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$(use_with X x)
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}
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src_compile() {
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export VARTEXFONTS="${T}"/fonts
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emake AR="$(tc-getAR)"
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emake -C src/nmath/standalone shared AR="$(tc-getAR)"
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use doc && emake info pdf
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}
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src_install() {
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default
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emake -C src/nmath/standalone DESTDIR="${D}" install
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if use doc; then
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emake DESTDIR="${D}" install-info install-pdf
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dosym ../manual /usr/share/doc/${PF}/html/manual
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fi
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newenvd - 99R <<-_EOF_
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LDPATH="${EPREFIX}/usr/$(get_libdir)/${PN}/lib"
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R_HOME="${EPREFIX}/usr/$(get_libdir)/${PN}"
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_EOF_
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newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
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# The buildsystem has a different understanding of install_names than
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# we require. Since it builds modules like shared objects (wrong), many
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# objects (all modules) get an incorrect install_name. Fixing the build
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# system here is not really trivial.
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if [[ ${CHOST} == *-darwin* ]] ; then
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local mod
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pushd "${ED}"/usr/$(get_libdir)/R >/dev/null || die
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for mod in $(find . -name "*.dylib") ; do
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mod=${mod#./}
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install_name_tool \
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-id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \
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"${mod}" || die
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done
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popd >/dev/null || die
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# 911553
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if [[ -f "${ED}/usr/$(get_libdir)/libRmath.dylib" ]] ; then
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install_name_tool \
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-id "${EPREFIX}/usr/$(get_libdir)/libRmath.dylib" \
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"${ED}/usr/$(get_libdir)/libRmath.dylib" || die
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fi
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fi
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# Users are encouraged to access some of the the R documentation
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# interactively, through functions like "contributors()" that
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# tries to open the "AUTHORS" file. Other files can be accessed
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# by name with RShowDoc(), and the documentation for e.g. license()
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# and RShowDoc() suggests a few of these names. Here we try to
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# collect as many names as possible that a user might actually
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# try to view through R, because if we don't decompress them,
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# then R doesn't know what to do with 'em. Bug #556706.
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local INTERACTIVE_DOCS=(
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AUTHORS
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COPYING
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FAQ
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NEWS
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THANKS
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)
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# Other data sources that are shipped as "documentation," but which
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# need to be accessible via their original unmolested filenames.
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local INTERACTIVE_DATA=(
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BioC_mirrors.csv
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CRAN_mirrors.csv
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KEYWORDS.db
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NEWS.rds
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)
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local f NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" )
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for f in "${NOCOMPRESS_DOCS[@]}"; do
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docompress -x /usr/share/doc/${PF}/${f}
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done
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# Finally, an extra copy of this started showing up at some point...
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rm "${ED}"/usr/$(get_libdir)/R/COPYING || die
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}
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pkg_postinst() {
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if use java; then
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einfo "Re-initializing java paths for ${P}"
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R CMD javareconf
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fi
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}
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Block a user