sci-physics/yoda: add 2.1.1

Closes: https://bugs.gentoo.org/954254
Part-of: https://github.com/gentoo/gentoo/pull/43491
Signed-off-by: Alexander Puck Neuwirth <apn-pucky@gentoo.org>

sci-physics/yoda/Manifest

@@ -2,3 +2,4 @@ DIST YODA-1.9.10.tar.bz2 1278729 BLAKE2B f6ae9b579d79b6be62e9644e327f0b449882c0f
 DIST YODA-1.9.5.tar.bz2 1077442 BLAKE2B 010ab725c57dfab8160e0304d461dc44c140d1ce234f3b70834ee58b8f269159529122095a94e6b79ef752612a6659a17e1874fda2941cfbcec1f53802916b6a SHA512 46e30b33d369f5d28ec228b71eaa298f3010cc06fe568785c74bbaf3d7468c26738cc2ee40da9bcc54d978f394187a2ee9289197283c86a3358583a3c0ecd247
 DIST YODA-2.0.2.tar.bz2 1869694 BLAKE2B cb5628bbfe0ecdd59073ff49496cd79ff6df95d94bbb36463c9de2cd6f576d0a8b8b4c1373f7f06354bb1ceb190a461cf61b4367085c44c44c5fb3982061a3ba SHA512 214f2caa2610a959588b1440fc66e238023829ca2fe7cf0e2f818891dd8db62fc0db288ac03c885c26c8de2a8813cd08deb53cefa0fb7d659b9b129d94d707c7
 DIST YODA-2.1.0.tar.bz2 1935119 BLAKE2B fe8e50759dd4191fb5f1ea8c20ff5a2bdaf444c81234b635c9566ac6f8248991eb998a31a0504bae1ac6ec47f8735ce263382ccdd800f201072cfe4c1d44dc57 SHA512 e17ec7e64082c835e98e4c03eb9d3128a2345b999d3d3a30b7b5b4b34afafd6d51c164011c5357c6fc38b35a511d8f98183de0d9edb13e32a73d5024733b02fc
+DIST YODA-2.1.1.tar.bz2 1023366 BLAKE2B de09ddfaddf365e35c83ba8e514638b91180c251bedb3009252be7bb2c08dbe64f98bea54dad3867906f20dac633c53182da7395d765e3a18cfa1157b7388222 SHA512 961426b17abbdee271a156965bb12a502a57e844e5ea4e5e7d201629aaf0b586684f99a71cba61de19fafc209cfbd653ff2601bc4915b2727cc36400c49ff5c8

sci-physics/yoda/files/yoda-2.1.1-testpaths.patch

@@ -0,0 +1,26 @@
+https://gitlab.com/hepcedar/yoda/-/merge_requests/362
+From 9a47654ff88dffc94cefa89b52819941364f1259 Mon Sep 17 00:00:00 2001
+From: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
+Date: Tue, 19 Aug 2025 09:28:35 +0000
+Subject: [PATCH] Allow lib64 in testpaths too
+
+---
+ tests/TestPaths.cc | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/tests/TestPaths.cc b/tests/TestPaths.cc
+index 5c9ec5ce3..13cf2407a 100644
+--- a/tests/TestPaths.cc
++++ b/tests/TestPaths.cc
+@@ -9,7 +9,7 @@ using namespace YODA;
+ auto testPaths() {
+ 
+   const std::string libPath = getLibPath();
+-  if ( !Utils::endswith(libPath, "/lib") )  return CHECK_TEST_RES(false);
++  if ( !Utils::endswith(libPath, "/lib") && !Utils::endswith(libPath, "/lib64") )  return CHECK_TEST_RES(false);
+ 
+   const std::string dataPath = getDataPath();
+   if ( !Utils::endswith(dataPath, "/share/YODA") )  return CHECK_TEST_RES(false);
+-- 
+GitLab
+

sci-physics/yoda/files/yoda-2.1.1-testwriter.patch

@@ -0,0 +1,42 @@
+https://gitlab.com/hepcedar/yoda/-/merge_requests/363
+From 9ea39901ed84e1b2c76c08830cc2df927216eda2 Mon Sep 17 00:00:00 2001
+From: Christian Gutschow <chris.g@cern.ch>
+Date: Tue, 19 Aug 2025 11:47:50 +0100
+Subject: [PATCH] add H5 protection
+
+---
+ include/YODA/Writer.h | 2 +-
+ tests/TestWriter.cc   | 2 ++
+ 2 files changed, 3 insertions(+), 1 deletion(-)
+
+diff --git a/include/YODA/Writer.h b/include/YODA/Writer.h
+index 0372533e8..5f9c0e5e6 100644
+--- a/include/YODA/Writer.h
++++ b/include/YODA/Writer.h
+@@ -9,8 +9,8 @@
+ #include "YODA/AnalysisObject.h"
+ #include "YODA/Utils/Traits.h"
+ 
+-#ifdef HAVE_HDF5
+ #include <YODA/Config/BuildConfig.h>
++#ifdef HAVE_HDF5
+ #ifdef WITH_HIGHFIVE
+ #include <YODA/highfive/H5File.hpp>
+ #else
+diff --git a/tests/TestWriter.cc b/tests/TestWriter.cc
+index fc0bd0792..8750f225e 100644
+--- a/tests/TestWriter.cc
++++ b/tests/TestWriter.cc
+@@ -5,7 +5,9 @@
+ #include "YODA/Scatter.h"
+ #include "YODA/WriterYODA.h"
+ #include "YODA/WriterYODA1.h"
++#ifdef HAVE_HDF5
+ #include "YODA/WriterH5.h"
++#endif
+ #include <cmath>
+ #include <vector>
+ #include <iostream>
+-- 
+GitLab
+

sci-physics/yoda/yoda-2.1.1.ebuild

@@ -0,0 +1,114 @@
+# Copyright 2022-2025 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{11..13} )
+
+inherit bash-completion-r1 python-single-r1 optfeature autotools
+
+DESCRIPTION="Yet more Objects for (High Energy Physics) Data Analysis"
+HOMEPAGE="https://yoda.hepforge.org/"
+
+if [[ ${PV} == 9999 ]]; then
+	inherit git-r3
+	EGIT_REPO_URI="https://gitlab.com/hepcedar/yoda"
+	EGIT_BRANCH="main"
+else
+	SRC_URI="https://yoda.hepforge.org/downloads?f=${P^^}.tar.bz2 -> ${P^^}.tar.bz2"
+	S="${WORKDIR}/${P^^}"
+	KEYWORDS="~amd64"
+fi
+
+LICENSE="GPL-3"
+SLOT="0/${PV}"
+IUSE="test +highfive +python +zlib"
+RESTRICT="!test? ( test )"
+REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )"
+
+RDEPEND="
+	dev-cpp/yaml-cpp
+	highfive? (
+		sci-libs/HighFive
+		sci-libs/hdf5[cxx]
+	)
+	python? ( ${PYTHON_DEPS} )
+	zlib? ( sys-libs/zlib )
+"
+DEPEND="${RDEPEND}"
+BDEPEND="
+	python? (
+		$(python_gen_cond_dep '
+			>=dev-python/cython-0.29.24[${PYTHON_USEDEP}]
+		')
+		test? (
+			$(python_gen_cond_dep '
+				dev-python/numpy[${PYTHON_USEDEP}]
+				dev-python/matplotlib[${PYTHON_USEDEP}]
+			')
+		)
+	)
+"
+
+PATCHES=(
+	"${FILESDIR}"/${P}-testpaths.patch
+	"${FILESDIR}"/${P}-testwriter.patch
+)
+
+pkg_setup() {
+	use python && python-single-r1_pkg_setup
+}
+
+src_prepare() {
+	default
+	# reconf due to 9999 version
+	eautoreconf
+}
+
+src_configure() {
+	# we need to use the prefix cython here
+	econf --disable-static \
+		--with-yaml-cpp="${EPREFIX}/usr" \
+		$(use_enable highfive h5) \
+		$(use_with highfive highfive "${ESYSROOT}/usr") \
+		$(use_enable python pyext) \
+		$(use_with zlib zlib "${ESYSROOT}/usr") \
+		$(usex python CYTHON="${ESYSROOT}/usr/bin/cython")
+}
+
+src_test() {
+	# PYTESTS and SHTESTS both require python tools
+	if use python; then
+		emake check
+	else
+		emake check PYTESTS= SHTESTS= NO_PYTHON=1
+	fi
+}
+
+src_install() {
+	default
+
+	if use python ; then
+		newbashcomp "${ED}"/etc/bash_completion.d/${PN}-completion ${PN}-config
+		bashcomp_alias ${PN}-config \
+			${PN}ls \
+			${PN}diff \
+			${PN}merge \
+			${PN}stack \
+			${PN}scale \
+			${PN}plot \
+			${PN}envelope \
+			${PN}cnv \
+			${PN}2root
+		rm "${ED}"/etc/bash_completion.d/${PN}-completion || die
+		python_optimize
+	fi
+
+	find "${ED}" -name '*.la' -delete || die
+}
+
+pkg_postinst() {
+	optfeature "root conversion" sci-physics/root
+	optfeature "latex plotting support" virtual/latex-base
+	optfeature "python plotting support" dev-python/matplotlib
+}