sci-libs/cdf: add 3.9.1

Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
2026-08-24 06:48:18 -07:00 · 2026-03-23 23:18:07 +01:00
parent fee4b9b0dd
commit 1ef64ce19a
3 changed files with 235 additions and 0 deletions
--- a/sci-libs/cdf/Manifest
+++ b/sci-libs/cdf/Manifest
@@ -6,4 +6,6 @@ DIST cdf390ug.pdf 1566123 BLAKE2B 639f800454e8f27286d769d505001e07e972b194d589a1
 DIST cdf390vbrm.pdf 1729074 BLAKE2B d30d177202b516891dba0cb99113d6d19af41d950384469ec8a35d96dd2f7418646d1622bbf35376f02cabe686d6da0382e65b98a5beef0bcf81eb827dab5270 SHA512 98379bb4f30c8073ea1d43b7b4b75559722b6de1c7a500bb79b25162cb1bbc82afd9eec443af4645e369de6f59bf031fd097bc802896ad7310b7614a73486961
 DIST cdf39_0-dist-cdf.tar.gz 1290187 BLAKE2B 03f7c7840c44514046df0d63ff6086be7263858f90225debfb8a4fe6c4d6e5b03c95faa2762f76e2ffc198ac77359b3494520258ec17678746fd7f619e362853 SHA512 e054b763d86c09c53375ef60a8690f43fcb106be1dc6fd907763379db1ab4c9677692671a63da74d955aec8ce3f866f420ddc7217a59ed68e51c4623562af387
 DIST cdf39_0-dist-java.tar.gz 1162924 BLAKE2B 4e6416ec5a2a2eede428fa00906ca0e42460916506e7b2075d622e322ffe53e337a77bf81aa871e1559fb6b9339f2f49e365ca835874e060da33cd7c68e45177 SHA512 860468257c70bd6cb9592f40e495b5efb9092fc6fa3ab68c2fdc729c46d9ea4f0499a0b29904fe9c1ae07c13958e551b4e5cc8b9b71c2401ca833f2020073606
+DIST cdf39_1-dist-cdf.tar.gz 1515823 BLAKE2B a1285c9c146de75147f2b5c2ddee4ac7e6ab97472de7b869f1ff0797f738ab17690adfe42bb9e49c56c14a39c13fb9784cc91bf354c383ccc2e4c4b994e3aab4 SHA512 ae1d6284a308d1db99367c0adf5ec40d9a6f9fc95de58b48d2b940e2fe6a3f0fa046ab17cec8cf5a4fde523f8ae69684b44b72dfa50028725bad25365ef910ab
+DIST cdf39_1-dist-java.tar.gz 1166989 BLAKE2B 894aff4252a9c60abd99ce5cd522d8fde2bbee329066aaef4669c032467dff9de0e92dad2a7a8a46227a4e2e428511aa9b2a5abe2e3b40cf4c7cacc1dd4ffcf1 SHA512 53109a612570658e508ee84b36ce0eef87b67b9a890d98f602bad2b0d9b8815bba64abc7181d4fbcd40ab7204002474e560c123893d226caefd22aa13bf1fd9a
 DIST cdf39ifd.pdf 656522 BLAKE2B 2ec3831f27e92fcec8191bedb1617c9f590b726732e02dd8ca317b814c369b46d50dd19e7bfc81df233e1e32ca6fb8191bf7e075ce67dda1ddd50645d5fc754b SHA512 f4de5bea46b7d1ea2621b9fa0ac1ab0f9904ada9a1625ce613f6fdb68ad25ca52398cbf75bb27902e54ba5ee7820f3ea1a563c655186047b8954cb53b4cd8197
--- a/sci-libs/cdf/cdf-3.9.1.ebuild
+++ b/sci-libs/cdf/cdf-3.9.1.ebuild
@@ -0,0 +1,148 @@
+# Copyright 1999-2026 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=9
+
+inherit flag-o-matic java-pkg-opt-2 toolchain-funcs
+
+MY_DP="${PN}$(ver_cut 1)$(ver_cut 2)"
+MY_P="${MY_DP}_$(ver_cut 3)"
+
+DESCRIPTION="Common Data Format I/O library for multi-dimensional data sets"
+HOMEPAGE="https://cdf.gsfc.nasa.gov"
+SRC_BASE="https://spdf.gsfc.nasa.gov/pub/software/${PN}/dist/${MY_P}/unix/"
+SRC_URI="
+	${SRC_BASE}/${MY_P}-dist-${PN}.tar.gz
+	java? ( ${SRC_BASE}/${MY_P}-dist-java.tar.gz )
+	doc? (
+		${SRC_BASE}/${MY_DP}_documentation/${MY_DP}ifd.pdf
+		${SRC_BASE}/${MY_DP}_documentation/${MY_DP}0crm.pdf
+		${SRC_BASE}/${MY_DP}_documentation/${MY_DP}0csrm.pdf
+		${SRC_BASE}/${MY_DP}_documentation/${MY_DP}0frm.pdf
+		${SRC_BASE}/${MY_DP}_documentation/${MY_DP}0prm.pdf
+		${SRC_BASE}/${MY_DP}_documentation/${MY_DP}0ug.pdf
+		${SRC_BASE}/${MY_DP}_documentation/${MY_DP}0vbrm.pdf
+	)
+"
+S="${WORKDIR}/${MY_P}-dist"
+
+LICENSE="CDF"
+SLOT="0"
+KEYWORDS="~amd64 ~ppc ~x86"
+IUSE="doc examples java ncurses static-libs"
+RESTRICT="bindist"
+
+RDEPEND="
+	java? ( >=virtual/jre-1.8:= )
+	ncurses? ( sys-libs/ncurses:= )
+"
+DEPEND="
+	${RDEPEND}
+"
+BDEPEND="
+	ncurses? ( virtual/pkgconfig )
+"
+
+PATCHES=(
+	# Respect cflags, ldflags, soname
+	"${FILESDIR}"/${PN}-3.9.1-respect-flags.patch
+)
+
+src_prepare() {
+	default
+
+	# Use proper lib dir
+	sed -i \
+		-e "s:\$(INSTALLDIR)/lib:\$(INSTALLDIR)/$(get_libdir):g" \
+		Makefile || die "sed failed"
+	# Uses the wide variant of *curses functions
+	sed -i \
+		-e "s:-I/usr/include/ncurses:$($(tc-getPKG_CONFIG) --cflags-only-I ncursesw):g" \
+		Makefile src/tools/Makefile || die "sed failed"
+}
+
+src_compile() {
+	# Reported upstream by email in 2024-03-22 (bug #862675)
+	append-flags -fno-strict-aliasing
+	filter-lto
+
+	PV_SO=${PV:0:1}
+
+	emake \
+		OS=linux \
+		AR="$(tc-getAR)" \
+		CC="$(tc-getCC)" \
+		LD="$(tc-getCC)" \
+		RANLIB="$(tc-getRANLIB)" \
+		RANLIBcmd="$(tc-getRANLIB)" \
+		ENV=gnu \
+		SHARED=yes \
+		SHAREDEXT_linux=so.${PV_SO} \
+		CURSESLIB_linux_gnu="$(usex ncurses "$($(tc-getPKG_CONFIG) --libs ncursesw)" "")" \
+		CURSES=$(usex ncurses) \
+		${myconf} \
+		all
+
+	if use java; then
+		export CDF_BASE="${S}"
+		export CDF_LIB="${S}/src/lib"
+		cd cdfjava/jni
+		$(tc-getCC) \
+			${CFLAGS} -fPIC \
+			-I${CDF_BASE}/src/include \
+			-I$(java-config -O)/include \
+			-I$(java-config -O)/include/linux \
+			-c cdfNativeLibrary.c \
+			-o cdfNativeLibrary.o \
+			|| die "compiling java lib failed"
+		$(tc-getCC) \
+			${LDFLAGS} \
+			-shared cdfNativeLibrary.o \
+			-Wl,-soname=libcdfNativeLibrary.so.${PV_SO} \
+			-L${CDF_LIB} -lcdf -lm \
+			-o libcdfNativeLibrary.so.${PV_SO} \
+			|| die "linking java lib failed"
+	fi
+}
+
+src_test() {
+	emake -j1 test
+}
+
+src_install() {
+	dodir /usr/bin /usr/$(get_libdir)
+	# -j1 (fragile non-autotooled make)
+	emake -j1 \
+		INSTALLDIR="${ED}/usr" \
+		SHAREDEXT=so.${PV_SO} \
+		install
+	dosym libcdf.so.${PV_SO} /usr/$(get_libdir)/libcdf.so
+	use static-libs || rm "${ED}"/usr/$(get_libdir)/libcdf.a
+	dodoc Release.notes CHANGES.txt Welcome.txt
+	doenvd "${FILESDIR}"/50cdf
+
+	if use doc; then
+		dodoc "${DISTDIR}"/${MY_DP}{0{crm,csrm,frm,prm,ug,vbrm},ifd}.pdf
+	fi
+
+	if use examples; then
+		docinto examples
+		dodoc samples/*
+	fi
+
+	if use java; then
+		cd cdfjava || die
+		dolib.so jni/libcdfNativeLibrary.so.${PV_SO}
+		dosym libcdfNativeLibrary.so.${PV_SO} \
+			/usr/$(get_libdir)/libcdfNativeLibrary.so
+		java-pkg_dojar */*.jar
+		if use examples; then
+			docinto examples/java
+			dodoc examples/*
+		fi
+	fi
+
+	# move this to a better location
+	dodir "/usr/share/${PF}"
+	mv "${ED}/usr/CDFLeapSeconds.txt" "${ED}/usr/share/${PF}/" || die
+}
--- a/sci-libs/cdf/files/cdf-3.9.1-respect-flags.patch
+++ b/sci-libs/cdf/files/cdf-3.9.1-respect-flags.patch
@@ -0,0 +1,85 @@
+--- a/Makefile
+++ b/Makefile
+@@ -1049,7 +1049,7 @@ install.tools: create.bin copy.tools
+ install.help_: create.help copy.help
+ 
+ install.lib: create.lib copy.lib.a
+-	@if [ -f $(LIBsrcDIR)/libcdf.so ] ; then \
+	@if [ -f $(LIBsrcDIR)/libcdf.$(SHAREDEXT) ] ; then \
+ 	   $(MAKE) $(EXTRAMAKE) MAKE=$(MAKE) "INSTALLDIR=$(INSTALLDIR)" install.lib.so ; \
+ 	 else \
+ 	   $(NULL) ; \
+@@ -1198,10 +1198,10 @@ copy.include:
+ 	      cp $(INCsrcDIR)/cdftools.h $(INSTALLDIR)/include
+ 
+ copy.lib.so:
+-	@echo cp $(LIBsrcDIR)/libcdf.so $(INSTALLDIR)/lib
+-	      cp $(LIBsrcDIR)/libcdf.so $(INSTALLDIR)/lib/libcdf.$(VERSION).so
+-	      rm -f $(INSTALLDIR)/lib/libcdf.so
+-	      cd $(INSTALLDIR)/lib && ln -s libcdf.$(VERSION).so libcdf.so
+	@echo cp $(LIBsrcDIR)/libcdf.$(SHAREDEXT) $(INSTALLDIR)/lib
+	    cp $(LIBsrcDIR)/libcdf.$(SHAREDEXT) $(INSTALLDIR)/lib/libcdf.$(VERSION).so
+	    rm -f $(INSTALLDIR)/lib/libcdf.$(SHAREDEXT)
+	    cd $(INSTALLDIR)/lib && ln -s libcdf.$(VERSION).so libcdf.$(SHAREDEXT)
+ 
+ copy.lib.sl:
+ 	@echo cp $(LIBsrcDIR)/libcdf.sl $(INSTALLDIR)/lib
+--- a/src/lib/Makefile
+++ b/src/lib/Makefile
+@@ -62,9 +62,9 @@ AR=ar
+ RANLIBcmd=ranlib
+ MACos=Darwin
+ 
+-CFLAGS=$(COPTIONS) $(PIC) -I$(INCLUDEcdf) -I$(ZlibDIR)
+CFLAGS+=$(COPTIONS) $(PIC) -I$(INCLUDEcdf) -I$(ZlibDIR)
+ CFLAGS2=-DZ_PREFIX
+-LDFLAGS=$(LDOPTIONS)
+LDFLAGS+=$(LDOPTIONS)
+ ARFLAGS=$(AROPTIONS)
+ ZLIB=zlib
+ 
+@@ -108,17 +108,18 @@ ranlib.yes:
+ 
+ shared.yes: libcdf.$(SHAREDEXT)
+ 
+libcdf.$(SHAREDEXT) \
+ libcdf.so \
+ libcdf.dylib \
+ libcdf.dll \
+ libcdf.sl: $(OBJs)
+ 	@if [ -f $@ ] ; then rm $@ ; else $(NULL) ; fi
+-	@echo $(LD) $(LDFLAGS) -o $@ $(OBJs) $(SYSLIBS)
+-	      $(LD) $(LDFLAGS) -o $@ $(OBJs) $(SYSLIBS)
+	@echo $(LD) $(CFLAGS) $(LDFLAGS) -Wl,-soname,libcdf.$(SHAREDEXT) -o $@ $(OBJs) $(SYSLIBS)
+	      $(LD) $(CFLAGS) $(LDFLAGS) -Wl,-soname,libcdf.$(SHAREDEXT) -o $@ $(OBJs) $(SYSLIBS)
+ 
+ libcdf.o: $(OBJs)
+-	@echo $(CC) $(LDFLAGS) -o $@ $(OBJs) $(SYSLIBS)
+-	      $(CC) $(LDFLAGS) -o $@ $(OBJs) $(SYSLIBS)
+	@echo $(CC) $(CFLAGS) $(LDFLAGS) -o $@ $(OBJs) $(SYSLIBS)
+	      $(CC) $(CFLAGS) $(LDFLAGS) -o $@ $(OBJs) $(SYSLIBS)
+ 
+ .c.o:
+ 	@if [ "$<" = "cdfgzip.c" ] || [ "$<" = "cdfgzip64.c" ] ; then \
+--- a/src/tools/Makefile
+++ b/src/tools/Makefile
+@@ -33,7 +33,7 @@
+ SHELL=/bin/sh
+ 
+ CURSES=yes
+-CCx=gcc
+CCx=$(CC)
+ LDx=
+ COPTIONS=-I/usr/include/ncurses -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -O2
+ COPTIONSld=
+@@ -45,8 +45,8 @@ MAKE=make
+ INCLUDEcdf= ../include
+ 
+ CC=$(CCx)
+-CFLAGS=$(COPTIONS) -I$(INCLUDEcdf)
+-CFLAGSld=$(COPTIONSld)
+CFLAGS+=$(COPTIONS) -I$(INCLUDEcdf)
+CFLAGSld+=$(COPTIONSld)
+ ifeq ($(LDx),)
+ LDx = $(CCx)
+ endif