sci-physics/yoda: include cstdint patch

Closes: https://bugs.gentoo.org/948090
Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
Part-of: https://github.com/gentoo/gentoo/pull/42053
Closes: https://github.com/gentoo/gentoo/pull/42053
Signed-off-by: Nowa Ammerlaan <nowa@gentoo.org>

sci-physics/yoda/files/yoda-2.0.2-zstr.patch

@@ -0,0 +1,24 @@
+From 31c9ad99ac3dbd34ad8c4285a689c5028490f776 Mon Sep 17 00:00:00 2001
+From: Christian Gutschow <chris.g@cern.ch>
+Date: Wed, 5 Feb 2025 19:02:38 +0000
+Subject: [PATCH] add missing header
+
+---
+ src/zstr/zstr.hpp | 1 +
+ 1 file changed, 1 insertion(+)
+
+diff --git a/src/zstr/zstr.hpp b/src/zstr/zstr.hpp
+index 66c21f847..61c587345 100644
+--- a/src/zstr/zstr.hpp
++++ b/src/zstr/zstr.hpp
+@@ -9,6 +9,7 @@
+ #pragma once
+ 
+ #include <cassert>
++#include <cstdint>
+ #include <fstream>
+ #include <sstream>
+ #include <zlib.h>
+-- 
+GitLab
+

sci-physics/yoda/yoda-2.0.2-r1.ebuild

@@ -0,0 +1,101 @@
+# Copyright 2022-2025 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{11..13} )
+
+inherit bash-completion-r1 python-single-r1 optfeature
+
+DESCRIPTION="Yet more Objects for (High Energy Physics) Data Analysis"
+HOMEPAGE="https://yoda.hepforge.org/"
+
+if [[ ${PV} == 9999 ]]; then
+	inherit git-r3
+	EGIT_REPO_URI="https://gitlab.com/hepcedar/yoda"
+else
+	SRC_URI="https://yoda.hepforge.org/downloads?f=${P^^}.tar.bz2 -> ${P^^}.tar.bz2"
+	S="${WORKDIR}/${P^^}"
+	KEYWORDS="~amd64"
+fi
+
+LICENSE="GPL-3"
+SLOT="0/${PV}"
+IUSE="root test +python +zlib"
+RESTRICT="!test? ( test )"
+REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} ) root? ( python )"
+
+RDEPEND="
+	root? ( sci-physics/root:=[${PYTHON_SINGLE_USEDEP}] )
+	python? ( ${PYTHON_DEPS} )
+	zlib? ( sys-libs/zlib )
+"
+DEPEND="${RDEPEND}"
+BDEPEND="
+	python? (
+		$(python_gen_cond_dep '
+			>=dev-python/cython-0.29.24[${PYTHON_USEDEP}]
+		')
+		test? (
+			$(python_gen_cond_dep '
+				dev-python/numpy[${PYTHON_USEDEP}]
+				dev-python/matplotlib[${PYTHON_USEDEP}]
+			')
+		)
+	)
+"
+
+PATCHES=(
+	"${FILESDIR}"/${P}-yamlcpp.patch # 937405
+	# https://gitlab.com/hepcedar/yoda/-/merge_requests/287
+	"${FILESDIR}"/${P}-zstr.patch # 948090
+)
+
+pkg_setup() {
+	use python && python-single-r1_pkg_setup
+}
+
+src_configure() {
+	# we need to use the prefix cython here
+	econf --disable-static \
+		$(use_enable root) \
+		$(use_enable python pyext) \
+		$(use_with zlib zlib "${ESYSROOT}/usr") \
+		$(usex python CYTHON="${ESYSROOT}/usr/bin/cython")
+}
+
+src_test() {
+	# PYTESTS and SHTESTS both require python tools
+	if use python; then
+		emake check
+	else
+		emake check PYTESTS= SHTESTS= NO_PYTHON=1
+	fi
+}
+
+src_install() {
+	default
+
+	if use python ; then
+		newbashcomp "${ED}"/etc/bash_completion.d/${PN}-completion ${PN}-config
+		bashcomp_alias ${PN}-config \
+			${PN}ls \
+			${PN}diff \
+			${PN}merge \
+			${PN}stack \
+			${PN}scale \
+			${PN}plot \
+			${PN}envelope \
+			${PN}cnv \
+			${PN}2root
+		rm "${ED}"/etc/bash_completion.d/${PN}-completion || die
+		python_optimize
+	fi
+
+	find "${ED}" -name '*.la' -delete || die
+}
+
+pkg_postinst() {
+	optfeature "latex plotting support" virtual/latex-base
+	optfeature "python plotting support" dev-python/matplotlib
+}