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sci-mathematics/polymake: treeclean
Closes: https://bugs.gentoo.org/909570 Closes: https://bugs.gentoo.org/883153 Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
This commit is contained in:
Jakov Smolić
@@ -86,10 +86,6 @@ net-misc/plowshare javascript
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# https://www.boost.org/doc/libs/1_78_0/libs/context/doc/html/context/architectures.html
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dev-libs/boost -context
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# Sam James <sam@gentoo.org> (2021-12-31)
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# sci-mathematics/polymake not keyworded here
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sci-mathematics/singular polymake
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# Sam James <sam@gentoo.org> (2021-12-08)
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# Masks involving webkit-gtk; webkit-gtk was dekeyworded on ppc for a while.
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# We haven't (yet?) restored keywords for all the bits we had to drop, so
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@@ -65,14 +65,6 @@ net-misc/seafile-client shibboleth
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sci-mathematics/yacas gui
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sci-physics/root qt5
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# Michael Orlitzky <mjo@gentoo.org> (2022-12-23)
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# sci-libs/lrslib is keyworded ~x86, but probably shouldn't have been:
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#
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# https://bugs.gentoo.org/771675
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#
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# Here we prevent its only direct consumer from pulling it in.
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sci-mathematics/polymake lrs
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# Michał Górny <mgorny@gentoo.org> (2022-11-16)
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# spirv-llvm-translator is not keyworded x86.
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dev-libs/libclc spirv
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@@ -259,11 +259,6 @@ dev-ruby/state_machine
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# 2015. No reverse dependencies. Masked for removal on 2023-09-26.
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dev-ruby/totoridipjp
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# Michael Orlitzky <mjo@gentoo.org> (2023-08-23)
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# Incompatible with perl-5.38 and no fix forthcoming (bug 909570).
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# Removal sometime after 2023-09-23.
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sci-mathematics/polymake
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# Sam James <sam@gentoo.org> (2023-08-18)
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# Masked for testing.
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=sys-libs/zlib-1.3-r1
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@@ -1,2 +0,0 @@
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DIST polymake-4.6-minimal.tar.bz2 5634651 BLAKE2B 6ee24fa6e70fdf746ea298d78e21e17fe38c5837ae2d3153e53656b4b003555b06897f463220b59474eed1111135dfa61c080d08d6363391afca51011f331122 SHA512 90f04c67bf297fb1b9f5a51d1654ff12385860b1fc80278a8b47f65970f11a1e0f33ede8a839b54a12422e772c8b76302ff78cc467712a2486f6e76ce0d5ab20
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DIST polymake-4.9-minimal.tar.bz2 7287220 BLAKE2B 4a40c3177bc146c16ae7924c2911bd96a26e7eec82963dba1293db272e60a6efea59bd27575951ecbe343862c1c28ecf1f2eb5c2bd1b9b09ef475a7ef44a6b95 SHA512 5c762a59b135dbb1bbcff9a0133a17c20529dc14a5af19efc2afbc1ae773ea3834ccc6b97db130ec91d9cd7a3a20988360b1d844f70272724794ac81ab42658f
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@@ -1,15 +0,0 @@
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diff -up lib/core/src/perl/RefHash.xxs.orig lib/core/src/perl/RefHash.xxs
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--- a/lib/core/src/perl/RefHash.xxs 2022-06-06 10:35:17.689807548 +0200
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+++ b/lib/core/src/perl/RefHash.xxs 2022-06-06 10:37:12.935663947 +0200
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@@ -71,7 +71,11 @@ SV* tmp_keysv::set(SV* keysv)
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Copy(obj.keyp, HEK_KEY(hekp), sizeof(SV*), char);
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HEK_LEN(hekp) = sizeof(SV*);
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HEK_HASH(hekp) = U32(obj.keyl >> 4); // hash value
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+#if PerlVersion < 5360
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HEK_FLAGS(hekp) = HVhek_UNSHARED;
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+#else
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+ HEK_FLAGS(hekp) = HVhek_NOTSHARED;
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+#endif
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sv.sv_any = &xpv;
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sv.sv_refcnt = 1;
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sv.sv_flags = SVt_PVIV | SVf_IVisUV | SVf_POK | SVp_POK | PmFlagsForHashKey;
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@@ -1,55 +0,0 @@
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<?xml version="1.0" encoding="UTF-8"?>
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<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
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<pkgmetadata>
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<maintainer type="project">
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<email>sci-mathematics@gentoo.org</email>
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<name>Gentoo Mathematics Project</name>
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</maintainer>
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<use>
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<flag name="bliss">
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Enable <pkg>sci-libs/bliss</pkg> interface for graph and face lattice
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isomorphism computations.
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</flag>
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<flag name="cdd">
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Enable <pkg>sci-libs/cddlib</pkg> interface for convex hull
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computations (Should be kept enabled).
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</flag>
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<flag name="flint">
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Build with "strongly recommended" support for
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<pkg>sci-mathematics/flint</pkg>.
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</flag>
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<flag name="libpolymake">
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Build the polymake library to build applications using the C++
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interface.
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</flag>
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<flag name="lrs">
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Enable <pkg>sci-libs/lrslib</pkg> interface for convex hull
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computations.
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</flag>
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<flag name="nauty">
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Build the extension for graph automorphism computations using
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<pkg>sci-mathematics/nauty</pkg>.
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</flag>
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<flag name="normaliz">
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Build the bundled extension for lattice computations using
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<pkg>sci-mathematics/normaliz</pkg>.
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</flag>
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<flag name="ppl">
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Enable <pkg>dev-libs/ppl</pkg> interface for convex hull computations.
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</flag>
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<flag name="singular">
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Enable the interface to <pkg>sci-mathematics/singular</pkg> for
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ideal related computations.
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</flag>
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</use>
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<longdescription lang="en">
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Polymake is open source software for research in polyhedral
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geometry. It deals with polytopes, polyhedra, and fans as well as
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simplicial complexes, matroids, graphs, tropical hypersurfaces, and
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other objects. Supported platforms include various flavors of Linux,
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FreeBSD, and Mac OS.
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</longdescription>
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<upstream>
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<remote-id type="github">polymake/polymake</remote-id>
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</upstream>
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</pkgmetadata>
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@@ -1,124 +0,0 @@
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# Copyright 1999-2023 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=8
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inherit flag-o-matic ninja-utils toolchain-funcs
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DESCRIPTION="Tool for polyhedral geometry and combinatorics"
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SRC_URI="https://polymake.org/lib/exe/fetch.php/download/${P}-minimal.tar.bz2"
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HOMEPAGE="https://polymake.org/"
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# polymake itself is GPL-2, but even the minimal tarball bundles a lot
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# of other code. I've included everything that turns up with a
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#
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# find ./ -name 'LICENSE' -o -name 'COPYING'
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#
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# in the list below. If any of these bother you, you may want to take a
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# closer look at how (or even if) the corresponding code is being used.
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LICENSE="BSD GPL-2 GPL-2+ MIT WTFPL-2"
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SLOT="0"
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KEYWORDS="amd64 ~riscv ~x86 ~amd64-linux ~x86-linux"
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IUSE="bliss +cdd +flint +normaliz libpolymake lrs nauty ppl singular"
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REQUIRED_USE="^^ ( bliss nauty )"
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# The "configure" script isn't autotools; it basically exists just to
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# exec some other perl script but using the familiar name.
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BDEPEND="dev-util/ninja
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dev-lang/perl"
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DEPEND="
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libpolymake? ( dev-lang/perl )
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dev-libs/boost:=
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dev-libs/gmp:=
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dev-libs/libxml2:2=
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dev-libs/libxslt:=
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dev-libs/mpfr:=
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sys-libs/readline:=
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bliss? ( sci-libs/bliss:=[gmp] )
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cdd? ( sci-libs/cddlib:= )
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flint? ( sci-mathematics/flint:= )
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lrs? ( >=sci-libs/lrslib-051:=[gmp] )
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nauty? ( sci-mathematics/nauty:= )
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normaliz? ( >=sci-mathematics/normaliz-3.8:= )
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ppl? ( dev-libs/ppl:= )
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singular? ( sci-mathematics/singular:= )"
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RDEPEND="${DEPEND}
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dev-lang/perl
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dev-perl/JSON
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dev-perl/Term-ReadLine-Gnu
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dev-perl/TermReadKey
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dev-perl/XML-SAX
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dev-perl/XML-Writer"
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# Tests observed failing after upgrade to polymake-4.5. No idea if they
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# worked prior to that. Someone who actually understands polymake will
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# have to get these working (at least briefly) before we re-enable them.
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RESTRICT=test
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PATCHES=( "${FILESDIR}/${P}-perl-5.36.patch" )
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src_configure() {
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# Without this, the build system tries to use "the highest possible"
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# optimization level and will override what's in your CXXFLAGS.
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export CXXOPT=""
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tc-export CC CXX
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# We need to define BLISS_USE_GMP if bliss was built with gmp support.
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# Therefore we require gmp support on bliss, so that the package
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# manager can prevent rebuilds with changed gmp flag. Yes, this should
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# be append-cppflags; but the build system doesn't respect CPPFLAGS.
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use bliss && append-cxxflags -DBLISS_USE_GMP
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# This isn't an autotools ./configure script, so a lot of things
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# don't work the way you'd expect. We disable openmp unconditionally
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# because it's only supposedly only used for building the bundled
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# libnormaliz (we unbundle it) and for something called to_simplex
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# that I can't find anywhere in the polymake source.
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./configure --prefix="${EPREFIX}/usr" \
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--libdir="${EPREFIX}/usr/$(get_libdir)" \
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--libexecdir="${EPREFIX}/usr/$(get_libdir)/polymake" \
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$(usev !libpolymake "--without-callable") \
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--without-java \
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--without-javaview \
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--without-native \
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--without-scip \
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--without-soplex \
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--without-openmp \
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$(use_with bliss bliss "${EPREFIX}/usr") \
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$(use_with cdd cdd "${EPREFIX}/usr") \
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$(use_with flint flint "${EPREFIX}/usr") \
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$(use_with lrs lrs "${EPREFIX}/usr") \
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$(use_with nauty nauty "${EPREFIX}/usr") \
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$(use_with normaliz libnormaliz "${EPREFIX}/usr") \
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$(use_with ppl ppl "${EPREFIX}/usr") \
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$(use_with singular singular "${EPREFIX}/usr") \
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|| die
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}
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# There is a backwards-compatible Makefile that would call ninja for us
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# in src_compile/src_install, but it doesn't handle MAKEOPTS correctly.
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src_compile() {
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eninja -C build/Opt
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}
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src_install() {
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# DESTDIR needs to find its way into the real install script,
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# support/install.pl.
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export DESTDIR="${D}"
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eninja -C build/Opt install
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}
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src_test() {
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perl/polymake --script run_testcases --emacs-style \
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|| die "test suite failed"
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}
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pkg_postinst() {
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elog "Additional features for polymake are available through external"
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elog "software such as sci-mathematics/4ti2 and sci-mathematics/topcom."
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elog "After installing new external software run 'polymake --reconfigure'."
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}
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@@ -1,122 +0,0 @@
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# Copyright 1999-2023 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=8
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inherit flag-o-matic ninja-utils toolchain-funcs
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DESCRIPTION="Tool for polyhedral geometry and combinatorics"
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SRC_URI="https://polymake.org/lib/exe/fetch.php/download/${P}-minimal.tar.bz2"
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HOMEPAGE="https://polymake.org/"
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# polymake itself is GPL-2, but even the minimal tarball bundles a lot
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# of other code. I've included everything that turns up with a
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#
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# find ./ -name 'LICENSE' -o -name 'COPYING'
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#
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# in the list below. If any of these bother you, you may want to take a
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# closer look at how (or even if) the corresponding code is being used.
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LICENSE="BSD GPL-2 GPL-2+ MIT WTFPL-2"
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SLOT="0"
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KEYWORDS="~amd64 ~riscv ~x86 ~amd64-linux ~x86-linux"
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IUSE="bliss +cdd +flint +normaliz libpolymake lrs nauty ppl singular"
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REQUIRED_USE="^^ ( bliss nauty )"
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# The "configure" script isn't autotools; it basically exists just to
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# exec some other perl script but using the familiar name.
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BDEPEND="dev-util/ninja
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dev-lang/perl"
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DEPEND="
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libpolymake? ( dev-lang/perl )
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dev-libs/boost:=
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dev-libs/gmp:=
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dev-libs/libxml2:2=
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dev-libs/libxslt:=
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dev-libs/mpfr:=
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sys-libs/readline:=
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bliss? ( sci-libs/bliss:=[gmp] )
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cdd? ( sci-libs/cddlib:= )
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flint? ( sci-mathematics/flint:= )
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lrs? ( >=sci-libs/lrslib-051:=[gmp] )
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nauty? ( sci-mathematics/nauty:= )
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normaliz? ( >=sci-mathematics/normaliz-3.8:= )
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ppl? ( dev-libs/ppl:= )
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singular? ( sci-mathematics/singular:= )"
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RDEPEND="${DEPEND}
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dev-lang/perl
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dev-perl/JSON
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dev-perl/Term-ReadLine-Gnu
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dev-perl/TermReadKey
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dev-perl/XML-SAX
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dev-perl/XML-Writer"
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# Tests observed failing after upgrade to polymake-4.5. No idea if they
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# worked prior to that. Someone who actually understands polymake will
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# have to get these working (at least briefly) before we re-enable them.
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RESTRICT=test
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src_configure() {
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# Without this, the build system tries to use "the highest possible"
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# optimization level and will override what's in your CXXFLAGS.
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export CXXOPT=""
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tc-export CC CXX
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# We need to define BLISS_USE_GMP if bliss was built with gmp support.
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# Therefore we require gmp support on bliss, so that the package
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# manager can prevent rebuilds with changed gmp flag. Yes, this should
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# be append-cppflags; but the build system doesn't respect CPPFLAGS.
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use bliss && append-cxxflags -DBLISS_USE_GMP
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# This isn't an autotools ./configure script, so a lot of things
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# don't work the way you'd expect. We disable openmp unconditionally
|
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# because it's only supposedly only used for building the bundled
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# libnormaliz (we unbundle it) and for something called to_simplex
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# that I can't find anywhere in the polymake source.
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./configure --prefix="${EPREFIX}/usr" \
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--libdir="${EPREFIX}/usr/$(get_libdir)" \
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--libexecdir="${EPREFIX}/usr/$(get_libdir)/polymake" \
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$(usev !libpolymake "--without-callable") \
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--without-java \
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--without-javaview \
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--without-native \
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--without-scip \
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--without-soplex \
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--without-openmp \
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$(use_with bliss bliss "${EPREFIX}/usr") \
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$(use_with cdd cdd "${EPREFIX}/usr") \
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$(use_with flint flint "${EPREFIX}/usr") \
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$(use_with lrs lrs "${EPREFIX}/usr") \
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$(use_with nauty nauty "${EPREFIX}/usr") \
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$(use_with normaliz libnormaliz "${EPREFIX}/usr") \
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$(use_with ppl ppl "${EPREFIX}/usr") \
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$(use_with singular singular "${EPREFIX}/usr") \
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|| die
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}
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# There is a backwards-compatible Makefile that would call ninja for us
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# in src_compile/src_install, but it doesn't handle MAKEOPTS correctly.
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src_compile() {
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eninja -C build/Opt
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}
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src_install() {
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# DESTDIR needs to find its way into the real install script,
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# support/install.pl.
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export DESTDIR="${D}"
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eninja -C build/Opt install
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}
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src_test() {
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perl/polymake --script run_testcases --emacs-style \
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|| die "test suite failed"
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}
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pkg_postinst() {
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elog "Additional features for polymake are available through external"
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elog "software such as sci-mathematics/4ti2 and sci-mathematics/topcom."
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elog "After installing new external software run 'polymake --reconfigure'."
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}
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Reference in New Issue
Block a user