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dev-python/astroscrappy: remove last-rited pkg

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Signed-off-by: Mikle Kolyada <zlogene@gentoo.org>
This commit is contained in:
Mikle Kolyada
2019-12-28 20:05:24 +03:00
parent fa325e212f
commit 113d4c047e
9 changed files with 0 additions and 343 deletions
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2
dev-python/astroscrappy/Manifest
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@@ -1,2 +0,0 @@
DIST astroscrappy-1.0.3.tar.gz 422209 BLAKE2B f0d5a83c6b4718eb6d0a1d60068459da3d886c6ab389be5b65a6b31dfb2bcfff9238e8773d1cfeca8db15289999ccbdcf96ba966f85ca76779077ee6fd0923a6 SHA512 2e96e8e62f81c770802a3c7699ca4455c640bb000aa4bffc22149745eed4e7e33cc4b297649020a601ff7fb242c0545cf9391c19ee2687adab26ac494d37dbb2
DIST astroscrappy-1.0.5.tar.gz 421910 BLAKE2B 7ca92277e3914b54cce09cb9a5d8e4657dbc2e3aead8904c967be906bdf78d4b73450adff7d7b970ec37e7b4ba5ab275f2c1cdd8b4573b1563daed6ecae14682 SHA512 bad648140abe3032aa76f43b4c61a15bc49b825bb8333d0e2dc6ba244542e5d6b283824336de82c73aefdfd62b952c9089c3237c913faf17874af13725345064

58
dev-python/astroscrappy/astroscrappy-1.0.3.ebuild
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@@ -1,58 +0,0 @@
# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=6
PYTHON_COMPAT=( python{2_7,3_5} )
inherit distutils-r1 toolchain-funcs flag-o-matic
DESCRIPTION="Optimized cosmic ray annihilation astropy python module"
HOMEPAGE="https://github.com/astropy/astroscrappy"
SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
LICENSE="BSD"
SLOT="0"
IUSE="doc openmp test"
RESTRICT="!test? ( test )"
RDEPEND="
dev-python/astropy[${PYTHON_USEDEP}]
dev-python/astropy-helpers[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
sci-libs/scipy[${PYTHON_USEDEP}]"
DEPEND="${RDEPEND}
dev-python/cython[${PYTHON_USEDEP}]
dev-python/setuptools[${PYTHON_USEDEP}]
doc? ( dev-python/sphinx[${PYTHON_USEDEP}] )
test? ( dev-python/pytest[${PYTHON_USEDEP}] )"
PATCHES=(
"${FILESDIR}/${P}-dont-install-binary.patch"
"${FILESDIR}/${P}-endian-fix-tests.patch"
"${FILESDIR}/${P}-numpy-fix-tests.patch"
"${FILESDIR}/${P}-respect-user-flag.patch"
)
DOCS=( CHANGES.rst )
python_prepare_all() {
sed -i -e '/auto_use/s/True/False/' setup.cfg || die
use openmp && tc-has-openmp && append-flags -fopenmp
distutils-r1_python_prepare_all
}
python_compile_all() {
use doc && esetup.py build_sphinx
}
python_test() {
esetup.py test
}
python_install_all() {
use doc && local HTML_DOCS=( docs/_build/html/. )
distutils-r1_python_install_all
}

60
dev-python/astroscrappy/astroscrappy-1.0.5.ebuild
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@@ -1,60 +0,0 @@
# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=6
PYTHON_COMPAT=( python{2_7,3_5,3_6} )
inherit distutils-r1
DESCRIPTION="Optimized cosmic ray annihilation astropy python module"
HOMEPAGE="https://github.com/astropy/astroscrappy"
SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
LICENSE="BSD"
SLOT="0"
IUSE="doc openmp test"
RESTRICT="!test? ( test )"
RDEPEND="
dev-python/astropy[${PYTHON_USEDEP}]
dev-python/astropy-helpers[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
sci-libs/scipy[${PYTHON_USEDEP}]"
DEPEND="${RDEPEND}
dev-python/cython[${PYTHON_USEDEP}]
dev-python/setuptools[${PYTHON_USEDEP}]
doc? ( dev-python/sphinx[${PYTHON_USEDEP}] )
test? ( dev-python/pytest[${PYTHON_USEDEP}] )"
DOCS=( CHANGES.rst )
PATCHES=(
"${FILESDIR}/${PN}-1.0.5-respect-user-flag.patch"
)
python_prepare_all() {
# use astropy-helpers from system
sed -i -e '/auto_use/s/True/False/' setup.cfg || die
# if the user explicitely does not want openmp, do not forcefully use it
if ! use openmp; then
sed -e 's/if has_openmp/if False/' \
-i astroscrappy/utils/setup_package.py || die
fi
distutils-r1_python_prepare_all
}
python_compile_all() {
use doc && esetup.py build_sphinx
}
python_test() {
esetup.py test
}
python_install_all() {
use doc && local HTML_DOCS=( docs/_build/html/. )
distutils-r1_python_install_all
}

14
dev-python/astroscrappy/files/astroscrappy-1.0.3-dont-install-binary.patch
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@@ -1,14 +0,0 @@
Author: Ole Streicher <olebole@debian.org>
Description: Don't install example/template binary
--- a/setup.py
+++ b/setup.py
@@ -80,9 +80,6 @@
# Define entry points for command-line scripts
entry_points = {}
-entry_points['console_scripts'] = [
- 'astropy-package-template-example = packagename.example_mod:main',
-]
# Include all .c files, recursively, including those generated by
# Cython, since we can not do this in MANIFEST.in with a "dynamic"

100
dev-python/astroscrappy/files/astroscrappy-1.0.3-endian-fix-tests.patch
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@@ -1,100 +0,0 @@
From 5b5ce99c63d03e60b6027f09f72231db11a87bf2 Mon Sep 17 00:00:00 2001
From: Curtis McCully <cmccully@lcogt.net>
Date: Thu, 3 Dec 2015 12:02:38 -0800
Subject: [PATCH] Made tests not endian specific.
--- a/astroscrappy/tests/test_utils.py
+++ b/astroscrappy/tests/test_utils.py
@@ -56,7 +56,7 @@
def test_medfilt5():
- a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('<f4')
+ a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('f4')
npmed5 = ndimage.filters.median_filter(a, size=(5, 5), mode='nearest')
npmed5[:2, :] = a[:2, :]
npmed5[-2:, :] = a[-2:, :]
@@ -68,7 +68,7 @@
def test_medfilt7():
- a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('<f4')
+ a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('f4')
npmed7 = ndimage.filters.median_filter(a, size=(7, 7), mode='nearest')
npmed7[:3, :] = a[:3, :]
npmed7[-3:, :] = a[-3:, :]
@@ -80,7 +80,7 @@
def test_sepmedfilt3():
- a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('<f4')
+ a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('f4')
npmed3 = ndimage.filters.median_filter(a, size=(1, 3), mode='nearest')
npmed3[:, :1] = a[:, :1]
npmed3[:, -1:] = a[:, -1:]
@@ -95,7 +95,7 @@
def test_sepmedfilt5():
- a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('<f4')
+ a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('f4')
npmed5 = ndimage.filters.median_filter(a, size=(1, 5), mode='nearest')
npmed5[:, :2] = a[:, :2]
npmed5[:, -2:] = a[:, -2:]
@@ -110,7 +110,7 @@
def test_sepmedfilt7():
- a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('<f4')
+ a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('f4')
npmed7 = ndimage.filters.median_filter(a, size=(1, 7), mode='nearest')
npmed7[:, :3] = a[:, :3]
npmed7[:, -3:] = a[:, -3:]
@@ -125,7 +125,7 @@
def test_sepmedfilt9():
- a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('<f4')
+ a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('f4')
npmed9 = ndimage.filters.median_filter(a, size=(1, 9), mode='nearest')
npmed9[:, :4] = a[:, :4]
npmed9[:, -4:] = a[:, -4:]
@@ -174,7 +174,7 @@
def test_subsample():
- a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('<f4')
+ a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('f4')
npsubsamp = np.zeros((a.shape[0] * 2, a.shape[1] * 2), dtype=np.float32)
for i in range(a.shape[0]):
for j in range(a.shape[1]):
@@ -189,8 +189,8 @@
def test_rebin():
a = np.ascontiguousarray(np.random.random((2002, 2002)), dtype=np.float32)
- a = a.astype('<f4')
- nprebin = np.zeros((1001, 1001), dtype=np.float32).astype('<f4')
+ a = a.astype('f4')
+ nprebin = np.zeros((1001, 1001), dtype=np.float32).astype('f4')
for i in range(1001):
for j in range(1001):
nprebin[i, j] = (a[2 * i, 2 * j] + a[2 * i + 1, 2 * j] +
@@ -202,7 +202,7 @@
def test_laplaceconvolve():
- a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('<f4')
+ a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('f4')
k = np.array([[0.0, -1.0, 0.0], [-1.0, 4.0, -1.0], [0.0, -1.0, 0.0]])
k = k.astype('<f4')
npconv = ndimage.filters.convolve(a, k, mode='constant', cval=0.0)
@@ -211,8 +211,8 @@
def test_convolve():
- a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('<f4')
- k = np.ascontiguousarray(np.random.random((5, 5))).astype('<f4')
+ a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('f4')
+ k = np.ascontiguousarray(np.random.random((5, 5))).astype('f4')
npconv = ndimage.filters.convolve(a, k, mode='constant', cval=0.0)
cconv = convolve(a, k)
assert_allclose(cconv, npconv, rtol=0, atol=1e-5)

21
dev-python/astroscrappy/files/astroscrappy-1.0.3-numpy-fix-tests.patch
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@@ -1,21 +0,0 @@
Author: Ole Streicher <olebole@debian.org>
Description: Cast the numpy arrays in the test to the same data type
Bug: https://ci.debian.net/data/packages/unstable/amd64/a/astroscrappy/20160112_151253.autopkgtest.log.gz
--- a/astroscrappy/tests/test_astroscrappy.py
+++ b/astroscrappy/tests/test_astroscrappy.py
@@ -36,7 +36,7 @@
imdata += gaussian(imdata.shape, x, y, brightness, 3.5)
# Add the poisson noise
-imdata = np.random.poisson(imdata)
+imdata = np.float32(np.random.poisson(imdata))
# Add readnoise
imdata += np.random.normal(0.0, 10.0, size=(1001, 1001))
@@ -60,4 +60,4 @@
# contrast that we can turn our detection threshold up.
mask, _clean = detect_cosmics(imdata, readnoise=10., gain=1.0,
sigclip=6, sigfrac=1.0)
- assert (mask == expected_crmask).sum() == (1001 * 1001)
\ No newline at end of file
+ assert (mask == expected_crmask).sum() == (1001 * 1001)

35
dev-python/astroscrappy/files/astroscrappy-1.0.3-respect-user-flag.patch
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@@ -1,35 +0,0 @@
--- astroscrappy/astroscrappy/utils/setup_package.py.orig 2016-03-09 22:50:34.304043122 +0000
+++ astroscrappy/astroscrappy/utils/setup_package.py 2016-03-09 22:54:53.560783823 +0000
@@ -43,30 +43,11 @@
sources=med_sources,
include_dirs=include_dirs,
libraries=libraries,
- language="c",
- extra_compile_args=['-g', '-O3', '-funroll-loops',
- '-ffast-math'])
+ language="c")
ext_im = Extension(name=str("astroscrappy.utils.image_utils"),
sources=im_sources,
include_dirs=include_dirs,
libraries=libraries,
- language="c",
- extra_compile_args=['-g', '-O3', '-funroll-loops',
- '-ffast-math'])
-
- has_openmp, outputs = check_openmp()
- if has_openmp:
- ext_med.extra_compile_args.append('-fopenmp')
- ext_im.extra_compile_args.append('-fopenmp')
- ext_med.extra_link_args = ['-g', '-fopenmp']
- ext_im.extra_link_args = ['-g', '-fopenmp']
- else:
- log.warn('OpenMP was not found. '
- 'astroscrappy will be compiled without OpenMP. '
- '(Use the "-v" option of setup.py for more details.)')
- log.debug(('(Start of OpenMP info)\n'
- 'compiler stdout:\n{0}\n'
- 'compiler stderr:\n{1}\n'
- '(End of OpenMP info)').format(*outputs))
+ language="c")
return [ext_med, ext_im]

36
dev-python/astroscrappy/files/astroscrappy-1.0.5-respect-user-flag.patch
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@@ -1,36 +0,0 @@
From f3acf99e65f58e2ee2f409d33f44a3abb1ba90c4 Mon Sep 17 00:00:00 2001
From: Sébastien Fabbro <bicatali@gentoo.org>
Date: Wed, 31 Aug 2016 22:19:12 +0000
Subject: [PATCH] respect user compiling flags Depending on compilers, -O3
-funroll-loops is not the fastest.
---
astroscrappy/utils/setup_package.py | 8 ++------
1 file changed, 2 insertions(+), 6 deletions(-)
diff --git a/astroscrappy/utils/setup_package.py b/astroscrappy/utils/setup_package.py
index 3e1fba2..c271613 100644
--- a/astroscrappy/utils/setup_package.py
+++ b/astroscrappy/utils/setup_package.py
@@ -73,16 +73,12 @@ def get_extensions():
sources=med_sources,
include_dirs=include_dirs,
libraries=libraries,
- language="c",
- extra_compile_args=['-g', '-O3', '-funroll-loops',
- '-ffast-math'])
+ language="c")
ext_im = Extension(name=str("astroscrappy.utils.image_utils"),
sources=im_sources,
include_dirs=include_dirs,
libraries=libraries,
- language="c",
- extra_compile_args=['-g', '-O3', '-funroll-loops',
- '-ffast-math'])
+ language="c")
has_openmp, outputs = check_openmp()
if has_openmp:
--
2.9.3

17
dev-python/astroscrappy/metadata.xml
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@@ -1,17 +0,0 @@
<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<maintainer type="project">
<email>sci-astronomy@gentoo.org</email>
<name>Gentoo Astronomy Project</name>
</maintainer>
<longdescription lang="en">
Astro-SCRAPPY is designed to detect cosmic rays in images (numpy arrays),
based on Pieter van Dokkum's L.A.Cosmic algorithm. Parallelization is
achieved using OpenMP.
</longdescription>
<upstream>
<remote-id type="pypi">astroscrappy</remote-id>
<remote-id type="github">astropy/astroscrappy</remote-id>
</upstream>
</pkgmetadata>