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sci-libs/beagle: treeclean

Browse Source 
Bug: https://bugs.gentoo.org/862669
Bug: https://bugs.gentoo.org/890423
Bug: https://bugs.gentoo.org/873262
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
This commit is contained in:
Arthur Zamarin
2024-06-16 21:02:37 +03:00
parent 26862ddcb5
commit 0993fd6e92
7 changed files with 0 additions and 209 deletions
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8
profiles/package.mask
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@@ -520,14 +520,6 @@ app-forensics/air
# Removal on 2024-06-16. Bug #932088.
dev-python/whichcraft
# Eli Schwartz <eschwartz93@gmail.com> (2024-05-17)
# Last updated in 2007, has no reverse dependencies, is unmaintained upstream
# (in 2010 a version 4 alpha was released using cmake, the project has seen no
# other activity upstream). Fails to build with dash, lto.
# Bug #862669, #890423.
# Removal on 2024-06-16.
sci-libs/beagle
# Sam James <sam@gentoo.org> (2024-04-28)
# Masked for testing. Tracker bug: bug #930805.
>=sys-libs/ncurses-6.5

1
sci-libs/beagle/Manifest
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@@ -1 +0,0 @@
DIST beagle-3.0.3.tar.gz 5002994 BLAKE2B f23c3178a52333aef0d1ba71d3a9ae240a805f016c9f619f59d76f818d9a647505af608aab2e0eb19efba6c6a3ed9d14455e03cfaa38df2b324689ba8139b849 SHA512 2f8f027f3f24d0fd287e27a80fe5b24e18550144add06fb8157dd03f734f5ce212f62889720c81fd33246fa7086e9b913802ec0c5155df5bd801c36888b346cb

56
sci-libs/beagle/beagle-3.0.3-r2.ebuild
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@@ -1,56 +0,0 @@
# Copyright 1999-2024 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
DESCRIPTION="Open BEAGLE, a versatile EC/GA/GP framework"
HOMEPAGE="https://chgagne.github.io/beagle/"
SRC_URI="https://downloads.sourceforge.net/beagle/${P}.tar.gz"
LICENSE="LGPL-2.1"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE="doc examples static-libs"
RDEPEND="sys-libs/zlib"
DEPEND="${RDEPEND}"
BDEPEND="doc? ( app-text/doxygen )"
PATCHES=(
"${FILESDIR}/${PN}-3.0.3-gcc43.patch"
"${FILESDIR}/${PN}-3.0.3-gcc47.patch"
"${FILESDIR}/${PN}-3.0.3-fix-c++14.patch"
)
src_prepare() {
default
sed -e "s:@LIBS@:& -lpthread:" -i PACC/Threading/Makefile.in || die
# fix build with C++17, bug #898274
sed -e "s/register //" -i PACC/Util/{MTRand.hpp,Tokenizer.cpp} || die
}
src_configure() {
econf \
--enable-optimization \
$(use_enable static-libs static)
}
src_compile() {
default
use doc && emake doc
}
src_install() {
use doc && local HTML_DOCS=( refman/. )
if use examples; then
dodoc -r examples
docompress -x /usr/share/doc/${PF}/examples
fi
default
if ! use static-libs; then
find "${D}" -name '*.la' -delete || die
fi
}

30
sci-libs/beagle/files/beagle-3.0.3-fix-c++14.patch
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@@ -1,30 +0,0 @@
Fix building with C++14, where destructors are noexcept(true) by default.
See also: https://bugs.gentoo.org/show_bug.cgi?id=597342
--- a/PACC/Threading/Thread.cpp
+++ b/PACC/Threading/Thread.cpp
@@ -79,6 +79,9 @@
\attention If the destructor in the derived thread class (e.g. MyThread above) does not wait for thread termination, the potential hazardous situation is that the runtime system will have deleted all of its members before calling this destructor (in C++, class destructors are called in reversed sequence). Thus, the still running thread could access deleted data members with unpredictable and unexpected results. So beware!
*/
Threading::Thread::~Thread(void)
+#if __cplusplus >= 201103L
+ noexcept(false)
+#endif
{
lock();
if(mThread) {
--- a/PACC/Threading/Thread.hpp
+++ b/PACC/Threading/Thread.hpp
@@ -53,7 +53,11 @@
class Thread : public Condition {
public:
Thread(void);
- virtual ~Thread(void);
+ virtual ~Thread(void)
+#if __cplusplus >= 201103L
+ noexcept(false)
+#endif
+ ;
void cancel(void);
bool isRunning(void) const;

89
sci-libs/beagle/files/beagle-3.0.3-gcc43.patch
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@@ -1,89 +0,0 @@
diff -rupN beagle-3.0.3b/PACC/Math/Matrix.cpp beagle-3.0.3/PACC/Math/Matrix.cpp
--- beagle-3.0.3b/PACC/Math/Matrix.cpp 2009-01-20 23:38:39.000000000 -0400
+++ beagle-3.0.3/PACC/Math/Matrix.cpp 2009-01-21 00:26:46.000000000 -0400
@@ -40,6 +40,7 @@
#include <stdexcept>
#include <iomanip>
#include <cmath>
+#include <climits>
using namespace std;
using namespace PACC;
diff -rupN beagle-3.0.3b/PACC/Math/Vector.hpp beagle-3.0.3/PACC/Math/Vector.hpp
--- beagle-3.0.3b/PACC/Math/Vector.hpp 2009-01-20 23:38:39.000000000 -0400
+++ beagle-3.0.3/PACC/Math/Vector.hpp 2009-01-21 00:26:29.000000000 -0400
@@ -42,6 +42,7 @@
#include "XML/Document.hpp"
#include "XML/Streamer.hpp"
#include <cmath>
+#include <algorithm>
namespace PACC {
diff -rupN beagle-3.0.3b/PACC/Socket/Cafe.cpp beagle-3.0.3/PACC/Socket/Cafe.cpp
--- beagle-3.0.3b/PACC/Socket/Cafe.cpp 2009-01-20 23:38:39.000000000 -0400
+++ beagle-3.0.3/PACC/Socket/Cafe.cpp 2009-01-21 00:31:09.000000000 -0400
@@ -35,6 +35,7 @@
#include "Socket/Cafe.hpp"
#include <iostream>
+#include <cstring>
#ifdef WIN32
///////////// specifics for windows /////////////
diff -rupN beagle-3.0.3b/PACC/Socket/Port.cpp beagle-3.0.3/PACC/Socket/Port.cpp
--- beagle-3.0.3b/PACC/Socket/Port.cpp 2009-01-20 23:38:39.000000000 -0400
+++ beagle-3.0.3/PACC/Socket/Port.cpp 2009-01-21 00:30:54.000000000 -0400
@@ -34,6 +34,7 @@
*/
#include "Socket/Port.hpp"
+#include <cstring>
#ifdef WIN32
///////////// specifics for windows /////////////
diff -rupN beagle-3.0.3b/PACC/Threading/Thread.cpp beagle-3.0.3/PACC/Threading/Thread.cpp
--- beagle-3.0.3b/PACC/Threading/Thread.cpp 2009-01-20 23:38:39.000000000 -0400
+++ beagle-3.0.3/PACC/Threading/Thread.cpp 2009-01-21 00:28:02.000000000 -0400
@@ -35,6 +35,7 @@
#include "Threading/Thread.hpp"
#include "Util/Assert.hpp"
+#include <cstdlib>
#ifdef WIN32
#include <windows.h>
diff -rupN beagle-3.0.3b/PACC/Util/SignalHandler.cpp beagle-3.0.3/PACC/Util/SignalHandler.cpp
--- beagle-3.0.3b/PACC/Util/SignalHandler.cpp 2009-01-20 23:38:39.000000000 -0400
+++ beagle-3.0.3/PACC/Util/SignalHandler.cpp 2009-01-20 23:44:20.000000000 -0400
@@ -37,6 +37,7 @@
#include "Util/Assert.hpp"
#include <signal.h>
#include <stdexcept>
+#include <cstdlib>
using namespace std;
using namespace PACC;
diff -rupN beagle-3.0.3b/PACC/Util/Tokenizer.cpp beagle-3.0.3/PACC/Util/Tokenizer.cpp
--- beagle-3.0.3b/PACC/Util/Tokenizer.cpp 2009-01-20 23:38:39.000000000 -0400
+++ beagle-3.0.3/PACC/Util/Tokenizer.cpp 2009-01-20 23:44:10.000000000 -0400
@@ -36,6 +36,8 @@
#include "Util/Tokenizer.hpp"
#include "Util/Assert.hpp"
#include <stdexcept>
+#include <cstring>
+#include <cstdlib>
using namespace std;
using namespace PACC;
diff -rupN beagle-3.0.3b/PACC/XML/Node.cpp beagle-3.0.3/PACC/XML/Node.cpp
--- beagle-3.0.3b/PACC/XML/Node.cpp 2009-01-20 23:38:39.000000000 -0400
+++ beagle-3.0.3/PACC/XML/Node.cpp 2009-01-20 23:45:09.000000000 -0400
@@ -39,6 +39,7 @@
#include "Util/Assert.hpp"
#include <sstream>
#include <stdexcept>
+#include <cstring>
using namespace std;
using namespace PACC;

10
sci-libs/beagle/files/beagle-3.0.3-gcc47.patch
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@@ -1,10 +0,0 @@
--- a/beagle/include/beagle/RouletteT.hpp
+++ b/beagle/include/beagle/RouletteT.hpp
@@ -87,7 +87,7 @@
Beagle_StackTraceBeginM();
Beagle_AssertM(inWeight>=0.0);
if(VectorType::empty()==false) inWeight += VectorType::back().first;
- push_back(std::make_pair(inWeight,inValue));
+ this->push_back(std::make_pair(inWeight,inValue));
Beagle_StackTraceEndM("void RouletteT<T>::insert(const T& inValue, double inWeight)");
}

15
sci-libs/beagle/metadata.xml
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@@ -1,15 +0,0 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<maintainer type="project">
<email>sci@gentoo.org</email>
<name>Gentoo Science Project</name>
</maintainer>
<longdescription>
Open BEAGLE is a C++ Evolutionary Computation (EC) framework. It provides an high-level software environment to do any kind of EC, with support for tree-based genetic programming, bit string and real-valued genetic algorithms, and evolution strategy.
</longdescription>
<upstream>
<remote-id type="sourceforge">beagle</remote-id>
<remote-id type="github">chgagne/beagle</remote-id>
</upstream>
</pkgmetadata>