sci-chemistry/azara: Remove last-rited pkg

Closes: https://bugs.gentoo.org/680726 Signed-off-by: Michał Górny <mgorny@gentoo.org>
2026-09-24 04:59:14 -07:00 · 2019-10-19 16:43:29 +02:00
parent 032b22b7e7
commit 053d05b0dc
8 changed files with 0 additions and 858 deletions
--- a/profiles/package.mask
+++ b/profiles/package.mask
@@ -466,12 +466,6 @@ app-office/geierlein
 # engine in games-action/minetest. Removal in 30 days.
 games-action/minetest_game

-# Michał Górny <mgorny@gentoo.org> (2019-09-19)
-# Last bumped in 2010.  Homepage & SRC_URI gone, redistribution
-# is forbidden by license.
-# Removal in 30 days.  Bug #680726.
-sci-chemistry/azara
-
 # Michał Górny <mgorny@gentoo.org> (2019-09-16)
 # Unmaintained.  Fails to build.  Last release in 2004.  EAPI 0.
 # Removal in 30 days.  Bug #592360.
--- a/sci-chemistry/azara/Manifest
+++ b/sci-chemistry/azara/Manifest
@@ -1 +0,0 @@
-DIST azara-2.8-src.tgz 638120 BLAKE2B 9b5046f1b51a6d7699fa72723355ba1588a2db863daff222473272e465c7c8999d17ed4846aac8b64c36137ef90f372ea3e24156d7492cc2f9c6f92ba7f2af88 SHA512 61a913b041f8ed7dade9d452ca0d99804ffcea0c678f23ad8357c1e7188996eecde9402201399306fcb32a504b17c3d61997f50ce57794f876c9f8d492ca500c
--- a/sci-chemistry/azara/azara-2.8-r5.ebuild
+++ b/sci-chemistry/azara/azara-2.8-r5.ebuild
@@ -1,101 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit eutils python-r1 toolchain-funcs
-
-DESCRIPTION="A suite of programmes to process and view NMR data"
-HOMEPAGE="http://www.bio.cam.ac.uk/azara/"
-SRC_URI="http://www.bio.cam.ac.uk/ccpn/download/${PN}/${P}-src.tgz"
-
-LICENSE="AZARA"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux"
-IUSE="xpm X"
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-RESTRICT="bindist mirror"
-
-RDEPEND="
-	x11-libs/libX11
-	x11-libs/motif:0
-	${PYTHON_DEPS}
-	xpm? ( x11-libs/libXpm )"
-DEPEND="${RDEPEND}"
-
-src_prepare() {
-	cat > ENVIRONMENT <<- EOF
-	CC=$(tc-getCC)
-	CFLAGS = ${CFLAGS}
-	LFLAGS = ${LDFLAGS}
-	MATH_LIB = -lm
-	X11_INCLUDE_DIR = -I"${EPREFIX}/usr/X11R6/include"
-	MOTIF_INCLUDE_DIR = -I"${EPREFIX}/usr/include" -I../global
-	X11_LIB_DIR = -L"${EPREFIX}/usr/$(get_libdir)"
-	MOTIF_LIB_DIR = -L"${EPREFIX}/usr/$(get_libdir)"
-	X11_LIB = -lX11
-	MOTIF_LIB = -lXm -lXt
-	SHARED_FLAGS = -shared
-	ENDIAN_FLAG = -DBIG_ENDIAN_DATA -DWRITE_ENDIAN_PAR
-	PIC = -fPIC
-	EOF
-
-	use xpm && echo "XPMUSE=\"XPM_FLAG=-DUSE_XPM XPM_LIB=-lXpm\"" >> ENVIRONMENT
-
-	epatch \
-		"${FILESDIR}"/${PV}-prll.patch \
-		"${FILESDIR}"/${PV}-impl-dec.patch \
-		"${FILESDIR}"/${PV}-python.patch \
-		"${FILESDIR}"/${PV}-64bit.patch
-}
-
-src_compile() {
-	local mymake
-	local makeflags
-
-	mymake="${mymake} help nongui"
-	use X && mymake="${mymake} gui"
-
-	emake ${mymake}
-
-	compilation() {
-		python_export PYTHON_CFLAGS PYTHON_LIBS
-		cd "${BUILD_DIR}" || die
-		emake DataRows_clean
-		emake \
-			PYTHON_INCLUDE_DIR="${PYTHON_CFLAGS}" \
-			PYTHON_LIB="${PYTHON_LIBS}" \
-			DataRows
-	}
-	python_copy_sources
-	python_foreach_impl compilation
-}
-
-src_install() {
-	rm bin/pythonAzara || die
-	if ! use X; then
-		rm bin/plot* || die
-	fi
-
-	dodoc CHANGES* README*
-	dohtml -r html/*
-
-	cd bin || die
-	dobin ${PN}
-	rm ${PN} || die
-	for bin in *; do
-		newbin ${bin} ${bin}-${PN}
-	done
-
-	installation() {
-		cd "${BUILD_DIR}" || die
-		python_domodule lib/DataRows.so
-	}
-	python_foreach_impl installation
-}
-
-pkg_postinst() {
-	einfo "Due to collision we moved all binary to *-${PN}"
-}
--- a/sci-chemistry/azara/files/2.8-64bit.patch
+++ b/sci-chemistry/azara/files/2.8-64bit.patch
@@ -1,85 +0,0 @@
-diff --git a/global/par.c b/global/par.c
-index ac87c88..fecfe35 100644
--- a/global/par.c
-+++ b/global/par.c
-@@ -562,9 +562,9 @@ static Status get_varian_header(FILE *fp, String error_msg)
-     return  OK;
- }
- 
-static long get_varian_long(int offset)
-+static int get_varian_int(int offset)
- {
-    long x;
-+    int x;
- 
-     if (swapped)
-     {
-@@ -572,7 +572,7 @@ static long get_varian_long(int offset)
- 	SWAP(varian_header[offset+1], varian_header[offset+2], char);
-     }
- 
-    x = *((long *) (varian_header + offset));
-+    x = *((int *) (varian_header + offset));
- 
-     return  x;
- }
-@@ -591,7 +591,7 @@ static short get_varian_short(int offset)
- 
- static Status check_varian_header(String error_msg)
- {
-    long nblocks, ntraces, np, ebytes, tbytes, /*bbytes,*/ d;
-+    int nblocks, ntraces, np, ebytes, tbytes, /*bbytes,*/ d;
-     short status;
-     FILE *fp;
- 
-@@ -605,17 +605,19 @@ static Status check_varian_header(String error_msg)
-     FCLOSE(fp);
- 
-     /* numbers in parentheses are offsets into header */
-    nblocks = get_varian_long(0);   /* number of blocks in file */
-    ntraces = get_varian_long(4);   /* number of traces per block */
-    np = get_varian_long(8);	    /* number of elements per trace */
-    ebytes = get_varian_long(12);   /* number of bytes per element */
-    tbytes = get_varian_long(16);   /* number of bytes per trace */
-    /*bbytes = get_varian_long(20);*/   /* number of bytes per block */
-+    nblocks = get_varian_int(0);   /* number of blocks in file */
-+    printf("nblocks = %d\n", nblocks);
-+    ntraces = get_varian_int(4);   /* number of traces per block */
-+    printf("ntraces = %d\n", ntraces);
-+    np = get_varian_int(8);	    /* number of elements per trace */
-+    ebytes = get_varian_int(12);   /* number of bytes per element */
-+    tbytes = get_varian_int(16);   /* number of bytes per trace */
-+    /*bbytes = get_varian_int(20);*/   /* number of bytes per block */
- 	    /* short starting at 24 is software version */
-     status = get_varian_short(26);  /* status of whole file */
- 	    /* long starting at 28 is number of block headers */
- 
-    if (ntraces != 1L)
-+    if (ntraces != 1)
- 	RETURN_ERROR_MSG("can only process Varian data with #traces = 1");
- 
-     if (np != npoints[0])
-@@ -646,12 +648,12 @@ static Status check_varian_header(String error_msg)
- 
-     if (integer)
-     {
-	if (ebytes == 2L)
-+	if (ebytes == 2)
- 	{
- 	    if (status & (1<<2))
- 		RETURN_ERROR_MSG("Varian header has inconsistent byte information");
- 	}
-	else if (ebytes == 4L)
-+	else if (ebytes == 4)
- 	{
- 	    if (!(status & (1<<2)))
- 		RETURN_ERROR_MSG("Varian header has inconsistent byte information");
-@@ -666,7 +668,7 @@ static Status check_varian_header(String error_msg)
-     }
-     else /* !integer, i.e. floating point */
-     {
-	if (ebytes != 4L)
-+	if (ebytes != 4)
- 	    RETURN_ERROR_MSG("Varian header has inconsistent byte information");
-     }
- 
--- a/sci-chemistry/azara/files/2.8-impl-dec.patch
+++ b/sci-chemistry/azara/files/2.8-impl-dec.patch
@@ -1,226 +0,0 @@
-diff --git a/DataRows/data_rows.c b/DataRows/data_rows.c
-index 054fa1f..a07eedc 100644
--- a/DataRows/data_rows.c
-+++ b/DataRows/data_rows.c
-@@ -1,4 +1,5 @@
- #include "data_rows.h"
-+#include "utility.h"
- 
- #include "par.h"
- 
-diff --git a/DataRows/py_data_rows.c b/DataRows/py_data_rows.c
-index fc8b3c8..985e6c3 100644
--- a/DataRows/py_data_rows.c
-+++ b/DataRows/py_data_rows.c
-@@ -1,4 +1,6 @@
- #include "Python.h"             /* Python header files */
-+#include "modsupport.h"
-+#include "intobject.h"
- 
- #include "data_rows.h"
- 
-diff --git a/connect/crosspeak.c b/connect/crosspeak.c
-index 0de57bf..7b016e1 100644
--- a/connect/crosspeak.c
-+++ b/connect/crosspeak.c
-@@ -1,4 +1,5 @@
- #include "crosspeak.h"
-+#include "utility.h"
- 
- #include "atom.h"
- #include "table.h"
-diff --git a/connect/shift.c b/connect/shift.c
-index f54ba9f..a880001 100644
--- a/connect/shift.c
-+++ b/connect/shift.c
-@@ -1,4 +1,5 @@
- #include "shift.h"
-+#include "utility.h"
- 
- #include "atom.h"
- #include "table.h"
-diff --git a/global/macros.h b/global/macros.h
-index 43fc43e..bb1d267 100644
--- a/global/macros.h
-+++ b/global/macros.h
-@@ -8,6 +8,7 @@
- #include <math.h>
- #include <string.h>
- #include <stdlib.h>
-+#include <ctype.h>
- 
- #ifdef WIN32
- #include <ctype.h>
-diff --git a/global/parser.c b/global/parser.c
-index 007d926..0f19575 100644
--- a/global/parser.c
-+++ b/global/parser.c
-@@ -1,4 +1,5 @@
- #include "parser.h"
-+#include "utility.h"
- 
- #define  MAX_NARGS		20
- 
-diff --git a/peak/fitter.c b/peak/fitter.c
-index ba6b175..b58f573 100644
--- a/peak/fitter.c
-+++ b/peak/fitter.c
-@@ -1,4 +1,5 @@
- #include "fitter.h"
-+#include "data.h"
- 
- #include "nonlinear_model.h"
- 
-diff --git a/peak/peak_fit.c b/peak/peak_fit.c
-index 92c69a8..5b9791f 100644
--- a/peak/peak_fit.c
-+++ b/peak/peak_fit.c
-@@ -6,6 +6,7 @@
- #include "output.h"
- #include "ref.h"
- #include "script_fit.h"
-+#include "fitter.h"
- 
- #define  MEGAWORD		(1024 * 1024)
- #define  DEFAULT_STORE		(2 * MEGAWORD)
-diff --git a/plot1/draw.c b/plot1/draw.c
-index 4fdce96..a2a2e8a 100644
--- a/plot1/draw.c
-+++ b/plot1/draw.c
-@@ -1,4 +1,5 @@
- #include "draw.h"
-+#include "ticks.h"
- 
- #include "color.h"
- #include "data.h"
-diff --git a/plot1/object.c b/plot1/object.c
-index 973897c..e043a53 100644
--- a/plot1/object.c
-+++ b/plot1/object.c
-@@ -1,4 +1,5 @@
- #include "object.h"
-+#include "script.h"
- 
- #include "color.h"
- #include "parser.h"
-diff --git a/plot1/output_popup.c b/plot1/output_popup.c
-index 0794584..e73976e 100644
--- a/plot1/output_popup.c
-+++ b/plot1/output_popup.c
-@@ -1,4 +1,5 @@
- #include "output_popup.h"
-+#include "script.h"
- 
- #include "output.hlp"
- 
-diff --git a/plot1/plots.c b/plot1/plots.c
-index 3790f5b..7ac58df 100644
--- a/plot1/plots.c
-+++ b/plot1/plots.c
-@@ -1,4 +1,5 @@
- #include "plots.h"
-+#include "script.h"
- 
- #include "data.h"
- #include "input.h"
-diff --git a/plot1/region_popup.c b/plot1/region_popup.c
-index 68b3930..f049d29 100644
--- a/plot1/region_popup.c
-+++ b/plot1/region_popup.c
-@@ -1,4 +1,5 @@
- #include "region_popup.h"
-+#include "data.h"
- 
- #include "region.hlp"
- 
-diff --git a/plot2/data_popup.c b/plot2/data_popup.c
-index 851b1d4..1c9026e 100644
--- a/plot2/data_popup.c
-+++ b/plot2/data_popup.c
-@@ -1,4 +1,5 @@
- #include "data_popup.h"
-+#include "rowcol_popup.h"
- 
- #include "data.hlp"
- 
-diff --git a/plot2/extract_popup.c b/plot2/extract_popup.c
-index 416aab0..a7fcbf3 100644
--- a/plot2/extract_popup.c
-+++ b/plot2/extract_popup.c
-@@ -1,4 +1,5 @@
- #include "extract_popup.h"
-+#include "script.h"
- 
- #include "extract.hlp"
- 
-diff --git a/plot2/levels_popup.c b/plot2/levels_popup.c
-index 197cf2c..e1ac22c 100644
--- a/plot2/levels_popup.c
-+++ b/plot2/levels_popup.c
-@@ -1,4 +1,5 @@
- #include "levels_popup.h"
-+#include "levels_func.h"
- 
- #include "levels.hlp"
- 
-diff --git a/plot2/plot2.c b/plot2/plot2.c
-index 9ca91c3..0c10d5a 100644
--- a/plot2/plot2.c
-+++ b/plot2/plot2.c
-@@ -1,4 +1,6 @@
- #include "plot2.h"
-+#include "object_popup.h"
-+#include "prop_popup.h"
- 
- #include "baseline_popup.h"
- #include "callback.h"
-diff --git a/plot2/rowcol_popup.c b/plot2/rowcol_popup.c
-index e9f4843..6c50426 100644
--- a/plot2/rowcol_popup.c
-+++ b/plot2/rowcol_popup.c
-@@ -1,4 +1,5 @@
- #include "rowcol_popup.h"
-+#include "ref_popup.h"
- 
- #include "rowcol.hlp"
- 
-diff --git a/plot2/script.c b/plot2/script.c
-index 2f55182..d7d886f 100644
--- a/plot2/script.c
-+++ b/plot2/script.c
-@@ -1,4 +1,5 @@
- #include "script.h"
-+#include "macros.h"
- 
- #include "param.h"
- #include "stack.h"
-diff --git a/plot2/slice_popup.c b/plot2/slice_popup.c
-index b601834..1b1e686 100644
--- a/plot2/slice_popup.c
-+++ b/plot2/slice_popup.c
-@@ -1,4 +1,5 @@
- #include "slice_popup.h"
-+#include "rowcol_func.h"
- 
- #include "baseline.h"
- #include "baseline_popup.h"
-diff --git a/process/files.c b/process/files.c
-index e09127e..d95d681 100644
--- a/process/files.c
-+++ b/process/files.c
-@@ -1,4 +1,5 @@
- #include "files.h"
-+#include "macros.h"
- 
- #include <sys/types.h>
- #include <sys/stat.h>
-diff --git a/project/project.c b/project/project.c
-index 92b70e3..a3e6d94 100644
--- a/project/project.c
-+++ b/project/project.c
-@@ -1,4 +1,5 @@
- #include "project.h"
-+#include "utility.h"
- 
- #include "block.h"
- #include "par.h"
--- a/sci-chemistry/azara/files/2.8-prll.patch
+++ b/sci-chemistry/azara/files/2.8-prll.patch
@@ -1,387 +0,0 @@
-diff --git a/DataRows/makefile b/DataRows/makefile
-index 587e710..4e0a312 100644
--- a/DataRows/makefile
-+++ b/DataRows/makefile
-@@ -28,7 +28,7 @@ GLOBAL_OBJS = \
- 	$(GLOBAL_DIR)/ref.o \
- 	$(GLOBAL_DIR)/utility.o
- 
-DataRows.so: locals globals
-+DataRows.so: $(LOCAL_OBJS) $(GLOBAL_OBJS)
- 	$(CC) $(SHARED_FLAGS) -o $@ $(CFLAGS) $(LFLAGS) \
- 		$(LOCAL_OBJS) \
- 		$(GLOBAL_OBJS)
-diff --git a/azara/makefile b/azara/makefile
-index 3ba0cd9..f7b4ce5 100644
--- a/azara/makefile
-+++ b/azara/makefile
-@@ -12,7 +12,7 @@ LOCAL_OBJS = \
- GLOBAL_OBJS = \
- 	$(GLOBAL_DIR)/help.o
- 
-azara: locals globals
-+azara: $(LOCAL_OBJS) $(GLOBAL_OBJS)
- 	$(CC) -o $@ $(LFLAGS) \
- 		$(LOCAL_OBJS) \
- 		$(GLOBAL_OBJS) \
-diff --git a/combine/makefile b/combine/makefile
-index a855236..7a83d8f 100644
--- a/combine/makefile
-+++ b/combine/makefile
-@@ -20,7 +20,7 @@ GLOBAL_OBJS = \
- 	$(GLOBAL_DIR)/ref.o \
- 	$(GLOBAL_DIR)/utility.o
- 
-combine: locals globals
-+combine: $(LOCAL_OBJS) $(GLOBAL_OBJS)
- 	$(CC) -o $@ $(LFLAGS) \
- 		$(LOCAL_OBJS) \
- 		$(GLOBAL_OBJS) \
-diff --git a/connect/makefile b/connect/makefile
-index d75e7da..d238507 100644
--- a/connect/makefile
-+++ b/connect/makefile
-@@ -23,7 +23,7 @@ GLOBAL_OBJS = \
- 	$(GLOBAL_DIR)/ref.o \
- 	$(GLOBAL_DIR)/utility.o
- 
-connect: locals globals
-+connect: $(LOCAL_OBJS) $(GLOBAL_OBJS)
- 	$(CC) -o $@ $(LFLAGS) \
- 		$(LOCAL_OBJS) \
- 		$(GLOBAL_OBJS) \
-diff --git a/contours/makefile b/contours/makefile
-index 5b832b8..49175dd 100644
--- a/contours/makefile
-+++ b/contours/makefile
-@@ -19,7 +19,7 @@ GLOBAL_OBJS = \
- 	$(GLOBAL_DIR)/ref.o \
- 	$(GLOBAL_DIR)/utility.o
- 
-contours: locals globals
-+contours: $(LOCAL_OBJS) $(GLOBAL_OBJS)
- 	$(CC) -o $@ $(LFLAGS) \
- 		$(LOCAL_OBJS) \
- 		$(GLOBAL_OBJS) \
-diff --git a/deflate/makefile b/deflate/makefile
-index 4c4e02e..42d5c30 100644
--- a/deflate/makefile
-+++ b/deflate/makefile
-@@ -18,7 +18,7 @@ GLOBAL_OBJS = \
- 	$(GLOBAL_DIR)/ref.o \
- 	$(GLOBAL_DIR)/utility.o
- 
-deflate: locals globals
-+deflate: $(LOCAL_OBJS) $(GLOBAL_OBJS)
- 	$(CC) -o $@ $(LFLAGS) \
- 		$(LOCAL_OBJS) \
- 		$(GLOBAL_OBJS) \
-diff --git a/extract/makefile b/extract/makefile
-index 3212cb9..fed874b 100644
--- a/extract/makefile
-+++ b/extract/makefile
-@@ -18,7 +18,7 @@ GLOBAL_OBJS = \
- 	$(GLOBAL_DIR)/ref.o \
- 	$(GLOBAL_DIR)/utility.o
- 
-extract: locals globals
-+extract: $(LOCAL_OBJS) $(GLOBAL_OBJS)
- 	$(CC) -o $@ $(LFLAGS) \
- 		$(LOCAL_OBJS) \
- 		$(GLOBAL_OBJS) \
-diff --git a/global/makefile b/global/makefile
-index 364fa41..5272a31 100644
--- a/global/makefile
-+++ b/global/makefile
-@@ -42,6 +42,31 @@ LINPACK_OBJS = \
- AZARA_OBJS = \
- 	help.o
- 
-+all: \
-+	azara_objects \
-+	decay_objects \
-+	simulate_objects \
-+	viewer_objects \
-+	components_objects \
-+	shuffle_objects \
-+	connect_objects \
-+	slides_objects \
-+	peak_find_objects \
-+	peak_fit_objects \
-+	plot1_objects \
-+	reflate_objects \
-+	deflate_objects \
-+	combine_objects \
-+	unblock_objects \
-+	extract_objects \
-+	project_objects \
-+	contours_objects \
-+	plot2_nog_objects \
-+	plot2_objects \
-+	process_objects \
-+	python_objects \
-+	integrate_objects
-+
- azara_objects: $(AZARA_OBJS)
- 
- DECAY_OBJS = \
-diff --git a/help/makefile b/help/makefile
-index 9e99a7c..59a86a3 100644
--- a/help/makefile
-+++ b/help/makefile
-@@ -39,7 +39,7 @@ globals:
- 
- .c.o:;  $(CC) -c $(CFLAGS) $<
- 
-hlp:
-+hlp: txt2hlp
- 	$(TXT2HLP) azara
- 	$(TXT2HLP) combine
- 	$(TXT2HLP) connect
-@@ -78,7 +78,7 @@ hlp:
- 	$(TXT2HLP) plot1/text
- 	$(TXT2HLP) DataRows
- 
-html:
-+html: txt2html
- 	$(TXT2HTML) azara
- 	$(TXT2HTML) combine
- 	$(TXT2HTML) connect
-diff --git a/makefile b/makefile
-index 9965b07..f4383af 100644
--- a/makefile
-+++ b/makefile
-@@ -14,7 +14,7 @@ all: help nongui DataRows gui
- help: \
- 	help_program
- 
-nongui: \
-+nongui: help \
- 	process_program \
- 	plot2_nog_program \
- 	peak_program \
-@@ -29,63 +29,66 @@ nongui: \
- 	connect_program \
- 	azara_program
- 
-gui: \
-+gui: help \
- 	plot2_program \
- 	plot1_program
- 
-DataRows: \
-+DataRows: help \
- 	DataRows
- 
-process_program:
-	cd process; $(MAKE)
-+global:
-+	$(MAKE) -C global
- 
-plot2_program:
-	cd plot2; $(MAKE) plot2
-+process_program: global
-+	$(MAKE) -C process
- 
-plot2_nog_program:
-	cd plot2; $(MAKE) plot2_nog
-+plot2_program: global
-+	$(MAKE) -C plot2
- 
-plot1_program:
-	cd plot1; $(MAKE)
-+plot2_nog_program: global
-+	$(MAKE) -C plot2 plot2_nog
- 
-peak_program:
-	cd peak; $(MAKE)
-+plot1_program: global
-+	$(MAKE) -C plot1
- 
-extract_program:
-	cd extract; $(MAKE)
-+peak_program:  global process_program
-+	$(MAKE) -C peak
- 
-project_program:
-	cd project; $(MAKE)
-+extract_program: global
-+	$(MAKE) -C extract
- 
-unblock_program:
-	cd unblock; $(MAKE)
-+project_program: global
-+	$(MAKE) -C project
- 
-contours_program:
-	cd contours; $(MAKE)
-+unblock_program: global
-+	$(MAKE) -C unblock
- 
-combine_program:
-	cd combine; $(MAKE)
-+contours_program: global
-+	$(MAKE) -C contours
- 
-deflate_program:
-	cd deflate; $(MAKE)
-+combine_program: global
-+	$(MAKE) -C combine
- 
-reflate_program:
-	cd reflate; $(MAKE)
-+deflate_program: global
-+	$(MAKE) -C deflate
- 
-utility_program:
-	cd utility; $(MAKE)
-+reflate_program: global
-+	$(MAKE) -C reflate
- 
-connect_program:
-	cd connect; $(MAKE)
-+utility_program: global
-+	$(MAKE) -C utility
- 
-help_program:
-	cd help; $(MAKE)
-+connect_program: global
-+	$(MAKE) -C connect
- 
-azara_program:
-	cd azara; $(MAKE)
-+help_program: global
-+	$(MAKE) -C help
- 
-DataRows:
-	cd DataRows; $(MAKE)
-+azara_program: global
-+	$(MAKE) -C azara
-+
-+DataRows: global
-+	$(MAKE) -C DataRows
- 
- clean: \
- 	global_clean \
-@@ -227,3 +230,5 @@ azara_realclean:
- DataRows_realclean:
- 	cd DataRows; $(MAKE) realclean
- 
-+
-+.PHONY: global process_program
-diff --git a/peak/makefile b/peak/makefile
-index f3c13b7..4211221 100644
--- a/peak/makefile
-+++ b/peak/makefile
-@@ -97,13 +97,13 @@ COMMAND_OBJS = \
- 
- all: peak_find peak_fit
- 
-peak_find: local_find global_find
-+peak_find: $(LOCAL_FIND_OBJS) $(GLOBAL_FIND_OBJS)
- 	$(CC) -o $@ $(LFLAGS) \
- 		$(LOCAL_FIND_OBJS) \
- 		$(GLOBAL_FIND_OBJS) \
- 		$(LIB) $(MATH_LIB)
- 
-peak_fit: local_fit global_fit commands
-+peak_fit: $(LOCAL_FIT_OBJS) $(GLOBAL_FIT_OBJS) $(COMMAND_OBJS)
- 	$(CC) -o $@ $(LFLAGS) \
- 		$(LOCAL_FIT_OBJS) \
- 		$(GLOBAL_FIT_OBJS) \
-diff --git a/plot1/makefile b/plot1/makefile
-index d1dce2d..e729443 100644
--- a/plot1/makefile
-+++ b/plot1/makefile
-@@ -95,7 +95,7 @@ GLOBAL_OBJS = \
- 	$(GLOBAL_DIR)/utility.o \
- 	$(GLOBAL_DIR)/window.o
- 
-plot1: locals globals
-+plot1: $(LOCAL_OBJS) $(GLOBAL_OBJS)
- 	$(CC) -o $@ $(LFLAGS) \
- 		$(LOCAL_OBJS) \
- 		$(GLOBAL_OBJS) \
-@@ -110,7 +110,7 @@ locals:
- globals:
- 	cd $(GLOBAL_DIR); $(MAKE) plot1_objects
- 
-.c.o:;	$(CC) $(X11_INCLUDE_DIR) $(MOTIF_INCLUDE_DIR) -c $(CFLAGS) $<
-+.c.o:;	$(CC) $(X11_INCLUDE_DIR) $(MOTIF_INCLUDE_DIR) -c $(CFLAGS) -I../plot2 $<
- 
- clean:
- 	rm -f *.o
-diff --git a/plot2/makefile b/plot2/makefile
-index a6b7b4a..98e286e 100644
--- a/plot2/makefile
-+++ b/plot2/makefile
-@@ -129,7 +129,7 @@ GLOBAL_PLOT2_NOG_OBJS = \
- 
- all: plot2 plot2_nog
- 
-plot2: local_plot2 global_plot2
-+plot2: $(LOCAL_PLOT2_OBJS) $(GLOBAL_PLOT2_OBJS) 
- 	$(CC) -o $@ $(CFLAGS) $(LFLAGS) \
- 		$(LOCAL_PLOT2_OBJS) \
- 		$(GLOBAL_PLOT2_OBJS) \
-@@ -137,7 +137,7 @@ plot2: local_plot2 global_plot2
- 		$(LIB) $(MATH_LIB) \
- 		$(MOTIF_LIB) $(X11_LIB) $(XPM_LIB)
- 
-plot2_nog: local_plot2_nog global_plot2_nog
-+plot2_nog: $(LOCAL_PLOT2_NOG_OBJS) $(GLOBAL_PLOT2_NOG_OBJS)
- 	$(CC) -o $@ $(CFLAGS) $(LFLAGS) \
- 		$(LOCAL_PLOT2_NOG_OBJS) \
- 		$(GLOBAL_PLOT2_NOG_OBJS) \
-diff --git a/process/makefile b/process/makefile
-index 22ceeed..72d587b 100644
--- a/process/makefile
-+++ b/process/makefile
-@@ -72,7 +72,7 @@ GLOBAL_OBJS = \
- 	$(GLOBAL_DIR)/utility.o \
- 	$(LINPACK_OBJS)
- 
-process: locals globals
-+process: $(LOCAL_OBJS) $(GLOBAL_OBJS)
- 	$(CC) -o $@ $(LFLAGS) \
- 		$(LOCAL_OBJS) \
- 		$(GLOBAL_OBJS) \
-diff --git a/project/makefile b/project/makefile
-index 78143fc..ed0f296 100644
--- a/project/makefile
-+++ b/project/makefile
-@@ -18,7 +18,7 @@ GLOBAL_OBJS = \
- 	$(GLOBAL_DIR)/ref.o \
- 	$(GLOBAL_DIR)/utility.o
- 
-project: locals globals
-+project: $(LOCAL_OBJS) $(GLOBAL_OBJS)
- 	$(CC) -o $@ $(LFLAGS) \
- 		$(LOCAL_OBJS) \
- 		$(GLOBAL_OBJS) \
-diff --git a/reflate/makefile b/reflate/makefile
-index 079a3fc..01ec311 100644
--- a/reflate/makefile
-+++ b/reflate/makefile
-@@ -18,7 +18,7 @@ GLOBAL_OBJS = \
- 	$(GLOBAL_DIR)/ref.o \
- 	$(GLOBAL_DIR)/utility.o
- 
-reflate: locals globals
-+reflate: $(LOCAL_OBJS) $(GLOBAL_OBJS)
- 	$(CC) -o $@ $(LFLAGS) \
- 		$(LOCAL_OBJS) \
- 		$(GLOBAL_OBJS) \
-diff --git a/unblock/makefile b/unblock/makefile
-index 510dc9e..d9a0f2b 100644
--- a/unblock/makefile
-+++ b/unblock/makefile
-@@ -18,7 +18,7 @@ GLOBAL_OBJS = \
- 	$(GLOBAL_DIR)/ref.o \
- 	$(GLOBAL_DIR)/utility.o
- 
-unblock: locals globals
-+unblock: $(LOCAL_OBJS) $(GLOBAL_OBJS)
- 	$(CC) -o $@ $(LFLAGS) \
- 		$(LOCAL_OBJS) \
- 		$(GLOBAL_OBJS) \
--- a/sci-chemistry/azara/files/2.8-python.patch
+++ b/sci-chemistry/azara/files/2.8-python.patch
@@ -1,44 +0,0 @@
-diff --git a/DataRows/makefile b/DataRows/makefile
-index 4e0a312..ce261ab 100644
--- a/DataRows/makefile
-+++ b/DataRows/makefile
-@@ -22,16 +22,17 @@ LOCAL_OBJS = \
- 	data_rows.o
- 
- GLOBAL_OBJS = \
-	$(GLOBAL_DIR)/block_io.o \
-	$(GLOBAL_DIR)/par.o \
-	$(GLOBAL_DIR)/parse.o \
-	$(GLOBAL_DIR)/ref.o \
-	$(GLOBAL_DIR)/utility.o
-+	block_io.o \
-+	par.o \
-+	parse.o \
-+	ref.o \
-+	utility.o
- 
- DataRows.so: $(LOCAL_OBJS) $(GLOBAL_OBJS)
- 	$(CC) $(SHARED_FLAGS) -o $@ $(CFLAGS) $(LFLAGS) \
- 		$(LOCAL_OBJS) \
-		$(GLOBAL_OBJS)
-+		$(GLOBAL_OBJS) \
-+		$(PYTHON_LIB)
- 
- local_objects: $(LOCAL_OBJS)
- 
-@@ -42,9 +43,13 @@ globals:
- 	cd $(GLOBAL_DIR); $(MAKE) python_objects
- 
- py_data_rows.o: py_data_rows.c
-	$(CC) -c $(CFLAGS) $(PYTHON_INCLUDE_DIR) $<
-+	$(CC) -c $(CFLAGS) $(PIC) $(PYTHON_INCLUDE_DIR) $<
- 
-.c.o:;	$(CC) -c $(CFLAGS) $<
-+data_rows.o: data_rows.c
-+	$(CC) -c $(CFLAGS) $(PIC) $<
-+
-+%.o: $(GLOBAL_DIR)/%.c
-+	$(CC) -c $(CFLAGS) $(PIC) $<
- 
- clean:
- 	rm -f *.o
--- a/sci-chemistry/azara/metadata.xml
+++ b/sci-chemistry/azara/metadata.xml
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-  <maintainer type="project">
-    <email>sci-chemistry@gentoo.org</email>
-    <name>Gentoo Chemistry Project</name>
-  </maintainer>
-</pkgmetadata>
				`@@ -1 +0,0 @@`
				`DIST azara-2.8-src.tgz 638120 BLAKE2B 9b5046f1b51a6d7699fa72723355ba1588a2db863daff222473272e465c7c8999d17ed4846aac8b64c36137ef90f372ea3e24156d7492cc2f9c6f92ba7f2af88 SHA512 61a913b041f8ed7dade9d452ca0d99804ffcea0c678f23ad8357c1e7188996eecde9402201399306fcb32a504b17c3d61997f50ce57794f876c9f8d492ca500c`