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gentoo/sci-biology
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Fabian Groffen 37aab35356 sci-biology/stride: drop x86-macos 
Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Fabian Groffen <grobian@gentoo.org>
2021-01-06 16:09:10 +01:00
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aaindex
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abyss
sci-biology/abyss: switch from virtual/libffi
2020-06-21 17:47:16 +01:00
amap
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ApE
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augustus
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bamtools
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bcftools
sci-biology/bcftools: Remove old
2020-08-03 23:11:15 +02:00
bedtools
sci-biology/bedtools: Add missing ${PYTHON_DEPS} to BDEPEND
2020-08-16 23:25:14 +02:00
bfast
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biogrep
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biopandas
Move {sci-libs → dev-python}/scipy
2020-09-18 12:08:06 +02:00
bioperl
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bioperl-db
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bioperl-network
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bioperl-run
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biopython
*/*: Update pypi (and github) remote-ids from HOMEPAGE
2020-12-11 14:19:38 +01:00
biosql
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blat
sci-biology/blat: -fno-common fix
2020-07-04 16:24:04 +01:00
bowtie
sci-biology/bowtie: Remove old
2020-09-09 12:34:29 +02:00
bwa
sci-biology/bwa: Remove old 0.7.16a
2020-09-26 12:00:48 +02:00
cd-hit
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clustal-omega
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clustalw
sci-biology/clustalw: keyworded 2.1-r1 for sparc
2020-07-19 14:36:54 +01:00
clustalw-mpi
sci-biology/clustalw-mpi: Port to EAPI 7
2020-11-01 19:36:24 +01:00
clustalx
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consed
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cutg
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dialign2
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dialign-tx
sci-biology/dialign-tx: Fix -fno-common
2020-11-01 19:35:50 +01:00
diya
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elph
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embassy
sci-biology/embassy: Remove embassy-meme
2020-09-09 14:27:51 +02:00
embassy-cbstools
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embassy-clustalomega
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embassy-domainatrix
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embassy-domalign
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embassy-domsearch
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embassy-emnu
sci-biology/embassy-emnu: Patch out -L/usr/lib for LLD
2020-11-02 23:10:59 +01:00
embassy-esim4
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embassy-hmmer
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embassy-iprscan
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embassy-mse
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embassy-phylipnew
sci-biology/embassy-phylipnew: Patch out -L/usr/lib for LLD
2020-11-01 19:36:08 +01:00
embassy-signature
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embassy-structure
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embassy-topo
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embassy-vienna
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emboss
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eugene
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exonerate
*/*: [QA] Remove redundant <longdescription/>s
2020-09-14 21:31:09 +02:00
express
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fasta
sci-biology/fasta: drop x86-macos
2021-01-06 16:08:50 +01:00
fasttree
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fastx_toolkit
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finchtv
*/*: [QA] Remove redundant <longdescription/>s
2020-09-14 21:31:09 +02:00
foldingathome
*/*: reassing axs' packages
2020-12-09 12:46:52 +01:00
gatk
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GBrowse
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gibbs
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glimmer
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glimmerhmm
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gmap
sci-biology/gmap: Remove old 2015.12.31.5
2020-11-01 19:36:02 +01:00
hmmer
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HTSeq
sci-biology/HTSeq: Remove old
2020-08-03 18:54:38 +02:00
iedera
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infernal
sci-biology/infernal: [QA] Pass AR to build system
2020-06-21 19:40:55 +02:00
iqpnni
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kalign
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kallisto
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lagan
sci-biology/lagan: Port to EAPI 7
2020-11-01 19:36:21 +01:00
libgtextutils
sci-biology/libgtextutils: update maintainer email since current is not subscribed to bugzilla
2020-09-08 14:16:53 +02:00
mafft
sci-biology/mafft: drop x86-macos
2021-01-06 16:08:55 +01:00
maq
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maqview
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mcl
sci-biology/mcl: Fix building against GCC 10
2020-06-21 15:49:32 +02:00
mira
sci-biology/mira: drop x86-macos
2021-01-06 16:09:04 +01:00
mosaik
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mothur
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mrbayes
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mummer
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muscle
sci-biology/muscle: Port to EAPI 7
2020-10-27 22:40:04 +01:00
ncbi-tools
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newick-utils
sci-biology/newick-utils: Port to EAPI 7
2020-11-01 19:36:11 +01:00
njplot
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pals
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paml
sci-biology/paml: Remove old 4.4c-r1
2020-11-01 19:35:56 +01:00
phrap
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phred
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phylip
sci-biology/phylip: Remove old
2020-10-27 21:56:18 +01:00
phyml
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picard
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piler
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pilercr
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plink
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poa
sci-biology/poa: [QA] Pass AR/RANLIB to build system
2020-06-21 19:40:52 +02:00
prank
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primer3
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prints
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probcons
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prodigal
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profphd
sci-biology/profphd: Port to EAPI 7
2020-10-27 22:40:10 +01:00
prosite
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psipred
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pysam
*/*: Update pypi (and github) remote-ids from HOMEPAGE
2020-12-11 14:19:38 +01:00
qrna
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raxml
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rebase
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recon
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repeatmasker
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repeatmasker-libraries
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rmblast
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rnaview
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samtools
sci-biology/samtools: Remove old
2020-08-03 23:11:18 +02:00
seaview
sci-biology/seaview: Remove old 4.5.4
2020-11-01 19:36:17 +01:00
seqan
sci-biology/seqan: remove unused file
2020-09-18 20:44:07 +02:00
sibsim4
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sim4
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STAR
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stride
sci-biology/stride: drop x86-macos
2021-01-06 16:09:10 +01:00
t-coffee
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transfac
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tree-puzzle
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treeviewx
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trf
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trnascan-se
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uchime
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ucsc-genome-browser
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unafold
sci-biology/unafold: Port to EAPI 7
2020-10-27 22:40:01 +01:00
update-blastdb
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vcftools
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velvet
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wgs-assembler
sci-biology/wgs-assembler: [QA] Pass CC/CXX to build system
2020-06-21 19:41:01 +02:00
wise
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yass
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metadata.xml
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