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gentoo/sci-biology
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David Seifert 911367bccf sci-biology/probcons: Port to EAPI 7 
Package-Manager: Portage-3.0.18, Repoman-3.0.3
Signed-off-by: David Seifert <soap@gentoo.org>
2021-04-05 16:14:44 +02:00
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aaindex
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abyss
*/*: Normalize metadata.xml files
2021-03-16 17:42:16 +01:00
amap
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ApE
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augustus
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bamtools
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bcftools
*/*: Remove obsolete values from PYTHON_COMPAT
2021-01-31 01:06:37 +01:00
bedtools
sci-biology/bedtools: bump to 2.30.0
2021-02-23 17:49:45 +01:00
bfast
sci-biology/bfast: Port to EAPI 7
2021-03-13 22:07:14 +01:00
biogrep
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biopandas
*/*: Remove obsolete values from PYTHON_COMPAT
2021-01-31 01:06:37 +01:00
bioperl
sci-biology/bioperl: fix variable references
2021-04-03 16:43:40 +01:00
bioperl-db
sci-biology/bioperl-db: adjust mysql_install_db location
2021-03-20 20:21:28 +01:00
bioperl-network
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bioperl-run
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biopython
sci-biology/biopython: Use optfeature_header() instead of custom elog
2021-04-04 20:55:06 +02:00
biosql
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blat
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bowtie
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bwa
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cd-hit
*/*: Normalize metadata.xml files
2021-03-16 17:42:16 +01:00
clustal-omega
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clustalw
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clustalw-mpi
sci-biology/clustalw-mpi: Port to EAPI 7
2020-11-01 19:36:24 +01:00
clustalx
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consed
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cutg
sci-biology/cutg: Port to EAPI 7
2021-04-05 15:30:39 +02:00
dialign2
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dialign-tx
sci-biology/dialign-tx: Fix -fno-common
2020-11-01 19:35:50 +01:00
diya
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elph
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embassy
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embassy-cbstools
sci-biology/embassy-cbstools: Port to EAPI 7
2021-03-13 13:04:49 +01:00
embassy-clustalomega
sci-biology/embassy-clustalomega: Port to EAPI 7
2021-03-13 13:04:37 +01:00
embassy-domainatrix
sci-biology/embassy-domainatrix: Port to EAPI 7
2021-03-13 13:04:55 +01:00
embassy-domalign
sci-biology/embassy-domalign: Port to EAPI 7
2021-03-13 13:04:43 +01:00
embassy-domsearch
sci-biology/embassy-domsearch: Port to EAPI 7
2021-03-13 13:04:24 +01:00
embassy-emnu
sci-biology/embassy-emnu: depend on ncurses unconditionally
2021-03-13 13:05:40 +01:00
embassy-esim4
sci-biology/embassy-esim4: Port to EAPI 7
2021-03-13 13:04:31 +01:00
embassy-hmmer
sci-biology/embassy-hmmer: Port to EAPI 7
2021-03-13 13:05:34 +01:00
embassy-iprscan
sci-biology/embassy-iprscan: Port to EAPI 7
2021-03-13 13:05:22 +01:00
embassy-mse
sci-biology/embassy-mse: Fix building against clang/LLD
2021-03-13 13:04:58 +01:00
embassy-phylipnew
sci-biology/embassy-phylipnew: Remove accidentally committed file
2021-03-13 13:29:59 +01:00
embassy-signature
sci-biology/embassy-signature: Port to EAPI 7
2021-03-13 13:05:16 +01:00
embassy-structure
sci-biology/embassy-structure: Port to EAPI 7
2021-03-13 13:05:10 +01:00
embassy-topo
sci-biology/embassy-topo: Port to EAPI 7
2021-03-13 13:05:28 +01:00
embassy-vienna
sci-biology/embassy-vienna: Port to EAPI 7
2021-03-13 13:05:04 +01:00
emboss
sci-biology/emboss: EAPI-7 bump, minor style
2021-03-12 16:31:15 +01:00
eugene
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exonerate
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express
sci-biology/express: EAPI-7/cmake.eclass, new HOMEPAGE/SRC_URI
2021-03-07 20:01:10 +01:00
fasta
sci-biology/fasta: drop x86-macos
2021-01-06 16:08:50 +01:00
fasttree
sci-biology/fasttree: Drop 2.1.8
2021-03-07 19:53:19 +01:00
fastx_toolkit
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finchtv
sci-biology/finchtv: Remove old
2021-02-27 16:53:49 +00:00
foldingathome
sci-biology/foldingathome: Remove old
2021-01-18 11:14:03 +01:00
gatk
sci-biology/gatk: Port to EAPI 7
2021-04-05 15:30:30 +02:00
GBrowse
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gibbs
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glimmer
sci-biology/glimmer: Port to EAPI 7
2021-04-05 15:30:36 +02:00
glimmerhmm
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gmap
sci-biology/gmap: Remove old 2015.12.31.5
2020-11-01 19:36:02 +01:00
hmmer
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HTSeq
*/*: Remove obsolete values from PYTHON_COMPAT
2021-01-31 01:06:37 +01:00
iedera
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infernal
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iqpnni
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kalign
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kallisto
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lagan
sci-biology/lagan: Port to EAPI 7
2020-11-01 19:36:21 +01:00
libgtextutils
*/*: Add proxied="yes" for non-@gentoo.org people
2021-03-16 17:42:19 +01:00
mafft
sci-biology/mafft: drop x86-macos
2021-01-06 16:08:55 +01:00
maq
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maqview
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mcl
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mira
sci-biology/mira: drop x86-macos
2021-01-06 16:09:04 +01:00
mosaik
*/*: Normalize metadata.xml files
2021-03-16 17:42:16 +01:00
mothur
sci-biology/mothur: Port to EAPI 7
2021-04-05 16:14:41 +02:00
mrbayes
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mummer
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muscle
sci-biology/muscle: Port to EAPI 7
2020-10-27 22:40:04 +01:00
ncbi-tools
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newick-utils
sci-biology/newick-utils: Port to EAPI 7
2020-11-01 19:36:11 +01:00
njplot
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pals
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paml
sci-biology/paml: Remove old 4.4c-r1
2020-11-01 19:35:56 +01:00
phrap
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phred
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phylip
sci-biology/phylip: remove whitespace
2021-03-05 20:27:28 +00:00
phyml
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picard
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piler
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pilercr
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plink
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poa
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prank
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primer3
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prints
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probcons
sci-biology/probcons: Port to EAPI 7
2021-04-05 16:14:44 +02:00
prodigal
*/*: Normalize metadata.xml files
2021-03-16 17:42:16 +01:00
profphd
sci-biology/profphd: Port to EAPI 7
2020-10-27 22:40:10 +01:00
prosite
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psipred
sci-biology/psipred: Remove old
2021-01-18 11:14:04 +01:00
pysam
*/*: Remove obsolete values from PYTHON_COMPAT
2021-01-31 01:06:37 +01:00
qrna
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raxml
sci-biology/raxml: Port to EAPI 7
2021-04-05 16:14:38 +02:00
rebase
sci-biology/rebase: Remove old
2021-01-18 11:14:05 +01:00
recon
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repeatmasker
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repeatmasker-libraries
sci-biology/repeatmasker-libraries: Port to EAPI 7
2021-04-05 16:14:32 +02:00
rmblast
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rnaview
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samtools
*/*: Normalize metadata.xml files
2021-03-16 17:42:16 +01:00
seaview
sci-biology/seaview: Remove old 4.5.4
2020-11-01 19:36:17 +01:00
seqan
sci-biology/seqan: Drop 2.4.0 (r0)
2021-03-07 19:53:21 +01:00
sibsim4
sci-biology/sibsim4: Port to EAPI 7
2021-04-05 16:14:35 +02:00
sim4
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STAR
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stride
sci-biology/stride: drop x86-macos
2021-01-06 16:09:10 +01:00
t-coffee
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transfac
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tree-puzzle
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treeviewx
sci-biology/treeviewx: Port to EAPI 7
2021-04-04 23:10:47 +02:00
trf
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trnascan-se
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uchime
sci-biology/uchime: EAPI-7 bump, use cmake.eclass, https, fix HOMEPAGE
2021-03-07 19:53:20 +01:00
ucsc-genome-browser
sci-biology/ucsc-genome-browser: add gcc 10 workaround
2021-03-03 21:19:45 +00:00
unafold
sci-biology/unafold: Port to EAPI 7
2020-10-27 22:40:01 +01:00
update-blastdb
sci-biology/update-blastdb: Port to EAPI 7
2021-04-05 16:14:29 +02:00
vcftools
*/*: Normalize metadata.xml files
2021-03-16 17:42:16 +01:00
velvet
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wgs-assembler
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wise
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yass
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metadata.xml
*/*: Normalize metadata.xml files
2021-03-16 17:42:16 +01:00