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gentoo/sci-biology
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David Seifert 4fd2ac9cbf sci-biology/express: remove stale boost lower bounds 
Signed-off-by: David Seifert <soap@gentoo.org>
2022-09-04 15:03:25 +02:00
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aaindex
sci-biology/aaindex: update EAPI 6 -> 8
2022-06-19 20:04:33 +02:00
abyss
sci-biology/abyss: fix metadata indentation
2022-07-30 09:27:55 +01:00
amap
sci-biology/amap: update EAPI 6 -> 8
2022-07-07 21:56:42 +02:00
augustus
sci-biology/augustus: respect CC, CXX
2022-09-03 23:09:19 +01:00
bamtools
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bcftools
sci-biology/bcftools: drop 1.13, 1.15
2022-06-19 10:08:44 +02:00
bedtools
sci-biology/bedtools: update EAPI 7 -> 8
2022-07-08 11:09:23 +02:00
bfast
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biogrep
sci-biology/biogrep: update EAPI 6 -> 8
2022-07-07 21:56:43 +02:00
biopandas
sci-biology/biopandas: update EAPI 7 -> 8
2022-07-08 11:09:24 +02:00
bioperl
sci-biology/bioperl: use <pkg> tags in metadata.xml
2022-08-26 11:46:27 +01:00
bioperl-db
sci-biology/bioperl-db: update EAPI 6 -> 8
2022-07-02 17:40:01 +02:00
bioperl-network
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bioperl-run
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biopython
sci-biology/biopython: Use slot for dev-python/psycopg
2022-06-04 09:41:58 +02:00
biosql
sci-biology/biosql: use HTTPS
2022-08-23 14:06:12 +02:00
blat
sci-biology/blat: update EAPI 6 -> 8
2022-07-07 21:56:45 +02:00
bowtie
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bwa
sci-biology/bwa: add github upstream metadata
2022-07-30 09:27:01 +01:00
cd-hit
sci-biology/cd-hit: update EAPI 6 -> 8
2022-07-07 21:56:46 +02:00
clustal-omega
sci-biology/clustal-omega: update EAPI 6 -> 8
2022-07-07 21:56:47 +02:00
clustalw
sci-biology/clustalw: update EAPI 6 -> 8 (2.1)
2022-07-07 21:56:49 +02:00
clustalw-mpi
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clustalx
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consed
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cutg
sci-biology/cutg: [QA] eend without argument
2022-05-13 20:03:34 +00:00
dialign2
sci-biology/dialign2: update EAPI 6 -> 8
2022-07-07 21:56:50 +02:00
dialign-tx
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elph
sci-biology/elph: update EAPI 6 -> 8
2022-07-07 21:56:51 +02:00
embassy
sci-biology/embassy: update EAPI 6 -> 8
2022-07-07 21:56:52 +02:00
embassy-cbstools
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embassy-clustalomega
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embassy-domainatrix
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embassy-domalign
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embassy-domsearch
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embassy-emnu
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embassy-esim4
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embassy-hmmer
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embassy-iprscan
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embassy-mse
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embassy-phylipnew
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embassy-signature
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embassy-structure
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embassy-topo
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embassy-vienna
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emboss
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eugene
sci-biology/eugene: update EAPI 6 -> 8
2022-07-07 21:56:53 +02:00
exonerate
sci-biology/exonerate: use HTTPS
2022-08-23 14:06:11 +02:00
express
sci-biology/express: remove stale boost lower bounds
2022-09-04 15:03:25 +02:00
fasta
sci-biology/fasta: add github upstream metadata
2022-07-30 09:34:09 +01:00
fasttree
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fastx_toolkit
sci-biology/fastx_toolkit: update EAPI 6 -> 8
2022-06-19 20:04:28 +02:00
finchtv
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foldingathome
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glimmer
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glimmerhmm
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gmap
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hmmer
sci-biology/hmmer: update EAPI 6 -> 8 (3.1_beta2)
2022-07-07 21:56:56 +02:00
HTSeq
sci-biology/HTSeq: drop 0.12.4
2022-07-02 15:16:02 +02:00
iedera
sci-biology/iedera: use HTTPS
2022-08-23 14:06:14 +02:00
infernal
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iqpnni
sci-biology/iqpnni: update EAPI 6 -> 8
2022-07-07 21:56:58 +02:00
kalign
sci-biology/kalign: update EAPI 6 -> 8
2022-07-07 21:56:59 +02:00
kallisto
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lagan
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libgtextutils
sci-biology/libgtextutils: update EAPI 6 -> 8
2022-06-19 20:04:27 +02:00
mafft
sci-biology/mafft: drop 7.305
2022-06-25 20:51:03 +02:00
maq
sci-biology/maq: update EAPI 6 -> 8
2022-07-07 21:57:00 +02:00
maqview
sci-biology/maqview: update EAPI 6 -> 8
2022-07-07 21:57:01 +02:00
mcl
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mosaik
sci-biology/mosaik: fix build with GCC 12
2022-06-13 13:10:16 +01:00
mothur
sci-biology/mothur: add github upstream metadata
2022-07-30 09:35:11 +01:00
mrbayes
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mummer
sci-biology/mummer: update EAPI 6 -> 8
2022-07-07 21:57:02 +02:00
muscle
sci-biology/muscle: use HTTPS
2022-08-23 14:06:15 +02:00
newick-utils
sci-biology/newick-utils: add github upstream metadata
2022-07-30 09:37:51 +01:00
pals
sci-biology/pals: use HTTPS
2022-08-23 14:06:15 +02:00
paml
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phrap
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phred
sci-biology/phred: update EAPI 6 -> 8
2022-07-07 21:57:04 +02:00
phylip
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phyml
sci-biology/phyml: update EAPI 6 -> 8
2022-07-07 21:57:05 +02:00
piler
sci-biology/piler: update EAPI 6 -> 8
2022-07-07 21:57:07 +02:00
pilercr
sci-biology/pilercr: update EAPI 6 -> 8
2022-07-07 21:57:06 +02:00
plink
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poa
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prank
sci-biology/prank: update EAPI 6 -> 8
2022-07-07 21:57:08 +02:00
primer3
sci-biology/primer3: update EAPI 6 -> 8
2022-06-19 20:04:30 +02:00
prints
sci-biology/prints: update EAPI 6 -> 8
2022-06-19 20:04:32 +02:00
probcons
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prodigal
sci-biology/prodigal: update EAPI 6 -> 8
2022-07-07 21:57:09 +02:00
profphd
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prosite
sci-biology/prosite: update EAPI 6 -> 8
2022-06-19 20:04:29 +02:00
pysam
sci-biology/pysam: enable py3.11
2022-06-19 10:08:43 +02:00
qrna
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raxml
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rebase
sci-biology/rebase: fix RDEPEND typo
2022-07-09 04:08:42 +01:00
recon
sci-biology/recon: update EAPI 6 -> 8
2022-07-07 21:57:10 +02:00
rnaview
sci-biology/rnaview: update EAPI 6 -> 8
2022-07-07 21:57:11 +02:00
samtools
sci-biology/samtools: drop 1.13, 1.15
2022-06-19 10:08:45 +02:00
seaview
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seqan
sci-biology/seqan: Keyword 3.1.0 x86, #834863
2022-06-01 14:03:51 +02:00
sibsim4
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sim4
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STAR
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stride
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t-coffee
sci-biology/t-coffee: add github upstream metadata
2022-07-30 10:13:37 +01:00
tree-puzzle
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treeviewx
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trf
sci-biology/trf: use HTTPS
2022-08-23 14:06:13 +02:00
trnascan-se
sci-biology/trnascan-se: drop 1.31
2022-07-09 11:53:58 +02:00
uchime
sci-biology/uchime: update EAPI 7 -> 8
2022-07-15 10:23:58 +02:00
ucsc-genome-browser
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unafold
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update-blastdb
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vcftools
sci-biology/vcftools: drop 0.1.14
2022-07-02 23:33:11 +01:00
velvet
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wise
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yass
sci-biology/yass: update EAPI 6 -> 8
2022-07-07 21:57:15 +02:00
metadata.xml
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