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Robin H. Johnson
56bd759df1
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed
40 lines
1.5 KiB
Plaintext
40 lines
1.5 KiB
Plaintext
TMalign.f:
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This program is to identify the best alignment of two protein
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structures that gives the highest TM-score. Input structures must
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be in the PDB format. By default, TM-score is normalized by the
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second protein. Users can obtain a brief instruction by simply
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running the program without arguments. For comments/suggestions,
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please contact email: zhng@umich.edu.
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Reference to cite:
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Yang Zhang, Jeffrey Skolnick, Nucl. Acid Res. 2005 33: 2303-9
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Permission to use, copy, modify, and distribute this program for
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any purpose, with or without fee, is hereby granted, provided that
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the notices on the head, the reference information, and this
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copyright notice appear in all copies or substantial portions of
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the Software. It is provided "as is" without express or implied
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warranty.
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---
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TMscore.f:
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This program is to compare two protein structures and identify the
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best superposition that has the highest TM-score. Input structures
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must be in the PDB format. By default, TM-score is normalized by
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the second protein. Users can obtain a brief instruction by simply
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running the program without arguments. For comments/suggestions,
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please contact email: zhng@umich.edu.
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Reference:
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Yang Zhang, Jeffrey Skolnick, Proteins, 2004 57:702-10.
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Permission to use, copy, modify, and distribute this program for
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any purpose, with or without fee, is hereby granted, provided that
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the notices on the head, the reference information, and this
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copyright notice appear in all copies or substantial portions of
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the Software. It is provided "as is" without express or implied
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warranty.
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