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gentoo/sci-biology
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Alexey Shvetsov bf920df09e
sci-biology/biopython: enable py3.12 
Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
2024-06-05 20:22:07 +03:00
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aaindex
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abyss
sci-biology/abyss: mark as LTO-unsafe
2024-03-08 11:09:00 +00:00
amap
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augustus
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bamtools
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bcftools
sci-biology/bcftools: add 1.20
2024-05-24 10:59:51 +02:00
bedtools
sci-biology/bedtools/files: add upstream PR reference
2024-04-25 11:37:48 +02:00
bfast
*/*: inline mirror://sourceforge
2024-04-30 20:21:05 +02:00
biogrep
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bioperl
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bioperl-db
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bioperl-network
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bioperl-run
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biopython
sci-biology/biopython: enable py3.12
2024-06-05 20:22:07 +03:00
biosql
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blat
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bowtie
*/*: inline mirror://sourceforge
2024-04-30 20:21:05 +02:00
bwa
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cd-hit
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clustal-omega
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clustalw
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clustalw-mpi
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clustalx
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cutg
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dialign2
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dialign-tx
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elph
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embassy
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embassy-cbstools
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embassy-clustalomega
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embassy-domainatrix
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embassy-domalign
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embassy-domsearch
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embassy-emnu
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embassy-esim4
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embassy-hmmer
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embassy-iprscan
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embassy-mse
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embassy-phylipnew
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embassy-signature
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embassy-structure
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embassy-topo
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embassy-vienna
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emboss
sci-biology/emboss: avoid file collision with dev-texlive/texlive-latexextra
2024-03-30 20:36:42 +01:00
eugene
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exonerate
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fasta
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fasttree
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fastx_toolkit
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finchtv
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foldingathome
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glimmer
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glimmerhmm
sci-biology/glimmerhmm: update EAPI 7 -> 8
2024-03-12 06:22:02 +00:00
gmap
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hmmer
sci-biology/hmmer: Add missing include into configure
2024-05-09 02:09:05 +01:00
iedera
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infernal
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iqpnni
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kalign
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kallisto
sci-biology/kallisto: update EAPI 7 -> 8
2024-04-07 07:16:10 +01:00
lagan
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libgtextutils
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mafft
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maq
*/*: inline mirror://sourceforge
2024-04-30 20:21:05 +02:00
maqview
*/*: inline mirror://sourceforge
2024-04-30 20:21:05 +02:00
mcl
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mosaik
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mothur
sci-biology/mothur: uncomment patch...
2024-03-22 08:49:27 +00:00
mrbayes
*/*: inline mirror://sourceforge
2024-04-30 20:21:05 +02:00
mummer
*/*: inline mirror://sourceforge
2024-04-30 20:21:05 +02:00
muscle
sci-biology/muscle: fix variable order
2024-03-20 06:20:22 +00:00
newick-utils
sci-biology/newick-utils: update EAPI 7 -> 8
2024-04-11 17:28:09 +01:00
pals
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paml
sci-biology/paml: restore ~x86
2024-05-08 17:56:06 +01:00
phylip
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phyml
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piler
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pilercr
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plink
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poa
*/*: inline mirror://sourceforge
2024-04-30 20:21:05 +02:00
prank
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primer3
*/*: inline mirror://sourceforge
2024-04-30 20:21:05 +02:00
prints
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probcons
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prodigal
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profphd
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prosite
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pysam
sci-biology/pysam: drop 0.21.0
2024-05-24 11:54:01 +02:00
qrna
sci-biology/qrna: add 2.0.4
2024-03-21 05:57:37 +00:00
raxml
sci-biology/raxml: drop 7.2.6
2024-05-24 10:44:40 +02:00
rebase
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recon
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rnaview
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samtools
sci-biology/samtools: add 1.20
2024-05-24 10:59:50 +02:00
seaview
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seqan
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sibsim4
*/*: inline mirror://sourceforge
2024-04-30 20:21:05 +02:00
sim4
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STAR
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stride
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t-coffee
sci-biology/t-coffee: mark as LTO-unsafe, strict-aliasing unsafe
2024-03-20 23:46:18 +00:00
tree-puzzle
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treeviewx
sci-biology/treeviewx: Stabilize 0.5.1.20100823_p4 amd64, #930203
2024-04-18 23:53:28 +01:00
trf
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trnascan-se
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uchime
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ucsc-genome-browser
sci-biology/ucsc-genome-browser: BDEPEND on cpio
2024-06-02 00:20:12 +01:00
unafold
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update-blastdb
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vcftools
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velvet
sci-biology/velvet: fixup whitespace & openmp check
2024-05-08 11:45:15 +01:00
wise
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yass
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metadata.xml
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