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gentoo/sci-biology
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Justin Lecher 17770b8dbc sci-biology/rebase: Version Bump 
Package-Manager: Portage-2.3.5, Repoman-2.3.2
Signed-off-by: Justin Lecher <jlec@gentoo.org>
2017-04-23 18:17:28 +01:00
..
aaindex
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
abyss
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
allpathslg
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
amap
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
amos
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
ApE
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
arb
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
ariadne
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
augustus
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
bamtools
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
beast-mcmc
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
bedtools
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
bfast
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
biogrep
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
biopandas
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
bioperl
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
bioperl-db
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
bioperl-network
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
bioperl-run
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
biopython
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
bioruby
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
biosql
sci-biology/biosql: Modernise to EAPI 6
2017-03-08 19:47:12 +01:00
blat
sci-biology/blat: Remove old
2017-03-08 23:16:21 +01:00
blossoc
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
bowtie
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
bwa
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
cd-hit
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
clustal-omega
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
clustalw
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
clustalw-mpi
sci-biology/clustalw-mpi: Modernise to EAPI 6
2017-03-08 23:16:27 +01:00
clustalx
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
consed
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
cufflinks
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
cutg
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
dialign2
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
dialign-tx
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
diya
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
elph
sci-biology/elph: Remove old
2017-03-08 23:16:09 +01:00
embassy
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
embassy-cbstools
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
embassy-clustalomega
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
embassy-domainatrix
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
embassy-domalign
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
embassy-domsearch
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
embassy-emnu
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
embassy-esim4
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
embassy-hmmer
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
embassy-iprscan
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
embassy-meme
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
embassy-mse
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
embassy-phylipnew
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
embassy-signature
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
embassy-structure
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
embassy-topo
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
embassy-vienna
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
emboss
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
eugene
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
exonerate
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
express
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
fasta
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
fasttree
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
finchtv
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
foldingathome
sci-biology/foldingathome: switch EPREFIX usages in pkg_* back to EROOT
2017-04-21 11:32:02 -04:00
gatk
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
GBrowse
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
gibbs
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
glimmer
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
glimmerhmm
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
gmap
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
goby
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
goby-cpp
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
hmmer
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
iedera
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
infernal
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
iqpnni
sci-biology/iqpnni: Remove old
2017-03-08 23:16:02 +01:00
kalign
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
lagan
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
last
sci-biology/last: [QA] Add missing python metadata variables
2017-04-20 18:37:00 +02:00
mafft
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
mammoth
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
maq
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
maqview
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
mcl
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
meme
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
mira
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
mosaik
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
mothur
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
mrbayes
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
mummer
sci-biology/mummer: Remove old
2017-03-08 23:15:56 +01:00
muscle
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
ncbi-tools
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
newick-utils
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
njplot
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
pals
sci-biology/pals: Modernise to EAPI 6
2017-03-08 23:16:34 +01:00
paml
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
phrap
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
phred
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
phylip
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
phyml
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
picard
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
piler
sci-biology/piler: Modernise to EAPI 6
2017-03-08 23:16:40 +01:00
pilercr
sci-biology/pilercr: Modernise to EAPI 6
2017-03-08 23:16:45 +01:00
plink
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
poa
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
prank
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
primer3
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
prints
sci-biology/prints: Modernise to EAPI 6
2017-03-08 19:47:24 +01:00
probcons
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
prodigal
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
profphd
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
prosite
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
psipred
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
pysam
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
qrna
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
raxml
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
rebase
sci-biology/rebase: Version Bump
2017-04-23 18:17:28 +01:00
recon
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
repeatmasker
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
repeatmasker-libraries
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
rmblast
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
rnaview
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
samtools
sci-biology/samtools: [QA] Add missing python metadata variables
2017-04-20 18:37:07 +02:00
seaview
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
seqan
sci-biology/seqan: [QA] Add missing python metadata variables
2017-04-20 18:37:13 +02:00
shrimp
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
sibsim4
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
sim4
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
snpfile
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
stride
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
t-coffee
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
tophat
sci-biology/tophat: Unbundle python modules
2017-04-01 14:09:58 +02:00
transfac
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
tree-puzzle
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
treeviewx
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
trf
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
trnascan-se
sci-biology/trnascan-se: amd64 stable wrt bug #615564
2017-04-23 12:19:16 +02:00
uchime
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
ucsc-genome-browser
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
unafold
sci-biology/unafold: Remove old, bug 605728
2017-04-10 22:40:51 +02:00
update-blastdb
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
vaal
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
vcftools
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
velvet
sci-biology/velvet: v4 expose additional variables as described in manual
2017-04-22 17:09:52 +01:00
vienna-rna
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
wgs-assembler
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
wise
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
yass
Drop $Id$ per council decision in bug #611234.
2017-02-28 11:50:50 -08:00
metadata.xml
…