Mike Gilbert eccf647e5e Quote EPREFIX when used in a parameter expansion ...

This prevents special characters like '*' from being interpreted as a
pattern match.

Signed-off-by: Mike Gilbert <floppym@gentoo.org>
Merges: https://codeberg.org/gentoo/gentoo/pulls/232

2026-03-07 14:06:17 -05:00

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aaindex

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

abyss

…

amap

…

augustus

…

bamtools

…

bcftools

sci-biology/bcftools: add 1.23

2026-02-02 17:03:49 +01:00

bedtools

…

bfast

…

biogrep

…

bioperl

…

bioperl-db

…

bioperl-network

…

bioperl-run

…

biopython

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

biosql

…

blat

…

bowtie

…

bwa

…

cd-hit

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

clustal-omega

…

clustalw

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

clustalw-mpi

…

cutg

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

dialign2

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

dialign-tx

…

elph

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

embassy

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

embassy-cbstools

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

embassy-clustalomega

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

embassy-domainatrix

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

embassy-domalign

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

embassy-domsearch

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

embassy-emnu

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

embassy-esim4

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

embassy-hmmer

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

embassy-iprscan

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

embassy-mse

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

embassy-phylipnew

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

embassy-signature

*/*: drop *-linux keywords

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embassy-structure

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

embassy-topo

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

embassy-vienna

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

emboss

sci-biology/emboss: fix GCC 15 errors

2026-02-04 15:10:39 +01:00

eugene

…

exonerate

…

fasta

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

fasttree

…

fastx_toolkit

…

finchtv

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

foldingathome

…

glimmer

…

glimmerhmm

…

gmap

…

hmmer

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

iedera

…

infernal

…

iqpnni

…

kalign

…

kallisto

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

lagan

…

libgtextutils

…

mafft

sci-biology/mafft: drop 7.490

2026-02-03 17:26:14 +01:00

maq

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

maqview

…

mcl

…

mosaik

…

mothur

sci-biology/mothur: drop 1.48.0

2026-01-28 19:30:48 +01:00

mrbayes

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

mummer

…

muscle

sci-biology/muscle: drop 3.8.31

2026-02-22 16:56:48 +01:00

newick-utils

…

pals

…

paml

sci-biology/paml: add 4.10.10, drop 4.9j

2026-02-11 03:42:08 +00:00

phylip

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

phyml

…

piler

…

pilercr

…

plink

…

poa

…

prank

…

primer3

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

prints

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

probcons

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

prodigal

…

profphd

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

prosite

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

pysam

…

qrna

…

raxml

sci-biology/raxml: fix C23 build issues

2026-02-11 11:00:41 +01:00

rebase

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

recon

…

samtools

sci-biology/samtools: add 1.23

2026-02-02 17:03:48 +01:00

seaview

…

seqan

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

sibsim4

…

sim4

…

STAR

…

stride

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

t-coffee

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

tree-puzzle

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

treeviewx

…

trf

…

trnascan-se

…

uchime

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

ucsc-genome-browser

…

unafold

…

update-blastdb

*/*: drop *-linux keywords

2025-12-19 10:51:55 +01:00

vcftools

Quote EPREFIX when used in a parameter expansion

2026-03-07 14:06:17 -05:00

velvet

…

wise

…

yass

…

metadata.xml

…