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gentoo/sci-biology
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Sam James 74dd2b21a3
sci-biology/unafold: add missing Perl BDEPENDs 
* Needs dev-lang/perl in general for building
* Needs dev-perl/XML-Parser for tests

Closes: https://bugs.gentoo.org/924694
Signed-off-by: Sam James <sam@gentoo.org>
2025-07-05 06:09:28 +01:00
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aaindex
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abyss
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amap
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augustus
sci-biology/augustus: drop 2.5.5
2025-05-20 21:12:22 +02:00
bamtools
sci-biology/bamtools: drop 2.5.2, 2.5.2-r1
2025-05-21 21:20:54 +02:00
bcftools
sci-biology/bcftools: add 1.22
2025-06-22 17:33:13 +02:00
bedtools
sci-biology/bedtools: drop 2.30.0
2025-04-29 20:37:58 +01:00
bfast
sci-biology/bfast: drop 0.7.0a
2025-04-09 20:31:40 +03:00
biogrep
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bioperl
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bioperl-db
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bioperl-network
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bioperl-run
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biopython
sci-biology/biopython: remove unused patch(es)
2025-05-27 09:27:36 +01:00
biosql
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blat
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bowtie
sci-biology/bowtie: Remove old
2025-05-01 13:36:04 +02:00
bwa
sci-biology/bwa: note that filter-lto has been fixed upstream
2025-03-25 00:11:07 -04:00
cd-hit
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clustal-omega
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clustalw
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clustalw-mpi
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cutg
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dialign2
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dialign-tx
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elph
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embassy
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embassy-cbstools
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embassy-clustalomega
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embassy-domainatrix
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embassy-domalign
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embassy-domsearch
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embassy-emnu
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embassy-esim4
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embassy-hmmer
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embassy-iprscan
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embassy-mse
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embassy-phylipnew
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embassy-signature
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embassy-structure
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embassy-topo
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embassy-vienna
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emboss
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eugene
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exonerate
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fasta
sci-biology/fasta: implicit declaration of function ftello
2025-04-17 12:02:23 +02:00
fasttree
sci-biology/fasttree: add github upstream metadata
2025-05-22 02:02:12 +01:00
fastx_toolkit
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finchtv
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foldingathome
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glimmer
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glimmerhmm
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gmap
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hmmer
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iedera
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infernal
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iqpnni
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kalign
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kallisto
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lagan
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libgtextutils
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mafft
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maq
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maqview
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mcl
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mosaik
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mothur
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mrbayes
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mummer
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muscle
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newick-utils
sci-biology/newick-utils: add dev-libs/libxml2 subslot op for incoming ABI break
2025-06-09 04:11:17 +01:00
pals
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paml
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phylip
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phyml
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piler
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pilercr
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plink
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poa
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prank
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primer3
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prints
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probcons
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prodigal
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profphd
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prosite
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pysam
sci-biology/pysam: Remove old
2025-03-22 21:06:33 +01:00
qrna
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raxml
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rebase
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recon
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rnaview
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samtools
sci-biology/samtools: add 1.22
2025-06-22 17:33:11 +02:00
seaview
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seqan
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sibsim4
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sim4
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STAR
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stride
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t-coffee
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tree-puzzle
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treeviewx
sci-biology/treeviewx: slot op on x11-libs/wxGTK
2025-05-17 16:57:29 +02:00
trf
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trnascan-se
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uchime
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ucsc-genome-browser
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unafold
sci-biology/unafold: add missing Perl BDEPENDs
2025-07-05 06:09:28 +01:00
update-blastdb
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vcftools
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velvet
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wise
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yass
sci-biology/yass: Fix build with USE=lowmem
2025-02-24 21:25:54 +00:00
metadata.xml
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