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gentoo/sci-biology
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Pacho Ramos 7dabbaaa3f sci-biology/biopython: use PEP517 build 
Also apply Fedora patches to get ready for newer reportlab and python3.12

Closes: https://bugs.gentoo.org/910016
Signed-off-by: Pacho Ramos <pacho@gentoo.org>
2023-07-21 10:55:03 +02:00
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aaindex
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abyss
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amap
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augustus
sci-biology/augustus: destabilize for ~x86
2023-06-09 17:45:04 +03:00
bamtools
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bcftools
sci-biology/bcftools: drop 1.16
2023-04-06 21:29:08 +02:00
bedtools
sci-biology/bedtools: fix gcc 13 build
2023-04-18 12:04:37 +02:00
bfast
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biogrep
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biopandas
sci-biology/biopandas: Remove old
2023-05-20 09:33:37 +02:00
bioperl
sci-biology/bioperl: destabilize for ~x86
2023-06-09 17:45:04 +03:00
bioperl-db
sci-biology/bioperl-db: destabilize for ~x86
2023-06-09 17:45:05 +03:00
bioperl-network
sci-biology/bioperl-network: destabilize for ~x86
2023-06-09 17:45:05 +03:00
bioperl-run
sci-biology/bioperl-run: destabilize for ~x86
2023-06-09 17:45:05 +03:00
biopython
sci-biology/biopython: use PEP517 build
2023-07-21 10:55:03 +02:00
biosql
sci-biology/biosql: destabilize for ~x86
2023-06-09 17:45:06 +03:00
blat
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bowtie
sci-biology/bowtie: add 2.5.1
2023-02-24 08:29:55 +01:00
bwa
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cd-hit
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clustal-omega
sci-biology/clustal-omega: destabilize for ~x86
2023-06-09 17:45:06 +03:00
clustalw
sci-biology/clustalw: destabilize for ~x86
2023-06-09 17:45:06 +03:00
clustalw-mpi
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clustalx
sci-biology/clustalx: destabilize for ~x86
2023-06-09 17:45:06 +03:00
cutg
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dialign2
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dialign-tx
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elph
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embassy
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embassy-cbstools
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embassy-clustalomega
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embassy-domainatrix
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embassy-domalign
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embassy-domsearch
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embassy-emnu
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embassy-esim4
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embassy-hmmer
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embassy-iprscan
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embassy-mse
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embassy-phylipnew
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embassy-signature
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embassy-structure
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embassy-topo
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embassy-vienna
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emboss
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eugene
sci-biology/eugene: destabilize for ~x86
2023-06-09 17:45:07 +03:00
exonerate
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express
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fasta
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fasttree
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fastx_toolkit
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finchtv
sci-biology/finchtv: destabilize for ~x86
2023-06-09 17:45:07 +03:00
foldingathome
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glimmer
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glimmerhmm
sci-biology/glimmerhmm: destabilize for ~x86
2023-06-09 17:45:07 +03:00
gmap
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hmmer
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HTSeq
sci-biology/HTSeq: enable py3.11
2023-02-24 08:00:09 +01:00
iedera
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infernal
sci-biology/infernal: destabilize for ~x86
2023-06-09 17:45:07 +03:00
iqpnni
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kalign
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kallisto
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lagan
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libgtextutils
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mafft
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maq
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maqview
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mcl
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mosaik
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mothur
sci-biology/mothur: destabilize for ~x86
2023-06-09 17:45:08 +03:00
mrbayes
*/*: remove sparc-solaris keyword
2023-05-25 21:49:16 +02:00
mummer
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muscle
sci-biology/muscle: destabilize for ~x86
2023-06-09 17:45:08 +03:00
newick-utils
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pals
sci-biology/pals: destabilize for ~x86
2023-06-09 17:45:08 +03:00
paml
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phylip
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phyml
sci-biology/phyml: destabilize for ~x86
2023-06-09 17:45:08 +03:00
piler
sci-biology/piler: destabilize for ~x86
2023-06-09 17:45:09 +03:00
pilercr
sci-biology/pilercr: destabilize for ~x86
2023-06-09 17:45:09 +03:00
plink
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poa
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prank
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primer3
*/*: remove sparc-solaris keyword
2023-05-25 21:49:16 +02:00
prints
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probcons
sci-biology/probcons: destabilize for ~x86
2023-06-09 17:45:09 +03:00
prodigal
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profphd
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prosite
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pysam
sci-biology/pysam: fix build with cython 3
2023-04-08 19:53:38 +02:00
qrna
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raxml
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rebase
*/*: remove sparc-solaris keyword
2023-05-25 21:49:16 +02:00
recon
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rnaview
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samtools
sci-biology/samtools: drop 0.1.20-r4
2023-05-05 11:19:58 +02:00
seaview
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seqan
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sibsim4
sci-biology/sibsim4: destabilize for ~x86
2023-06-09 17:45:09 +03:00
sim4
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STAR
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stride
sci-biology/stride: destabilize for ~x86
2023-06-09 17:45:10 +03:00
t-coffee
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tree-puzzle
sci-biology/tree-puzzle: destabilize for ~x86
2023-06-09 17:45:10 +03:00
treeviewx
sci-biology/treeviewx: destabilize for ~x86
2023-06-09 17:45:10 +03:00
trf
sci-biology/trf: destabilize for ~x86
2023-06-09 17:45:10 +03:00
trnascan-se
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uchime
sci-biology/uchime: destabilize for ~x86
2023-06-09 17:45:11 +03:00
ucsc-genome-browser
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unafold
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update-blastdb
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vcftools
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velvet
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wise
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yass
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metadata.xml
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