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140 lines
6.1 KiB
Diff
140 lines
6.1 KiB
Diff
From: Ole Streicher <olebole@debian.org>
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Date: Tue, 12 Jul 2016 08:54:59 +0200
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Subject: Use LooseVersion instead of StrictVersion.
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StrictVersion fails on numpy RCs. LooseVersion is a compromise until something better is available.
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---
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spectral_cube/np_compat.py | 4 ++--
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spectral_cube/spectral_cube.py | 4 ++--
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spectral_cube/tests/test_masks.py | 4 ++--
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spectral_cube/tests/test_moments.py | 4 ++--
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spectral_cube/tests/test_spectral_cube.py | 10 +++++-----
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5 files changed, 13 insertions(+), 13 deletions(-)
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diff --git a/spectral_cube/np_compat.py b/spectral_cube/np_compat.py
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index e72b4d9..dd9080a 100644
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--- a/spectral_cube/np_compat.py
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+++ b/spectral_cube/np_compat.py
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@@ -1,7 +1,7 @@
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from __future__ import print_function, absolute_import, division
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import numpy as np
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-from distutils.version import StrictVersion
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+from distutils.version import LooseVersion
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def allbadtonan(function):
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"""
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@@ -11,7 +11,7 @@ def allbadtonan(function):
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"""
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def f(data, axis=None):
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result = function(data, axis=axis)
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- if StrictVersion(np.__version__) >= StrictVersion('1.9.0'):
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+ if LooseVersion(np.__version__) >= LooseVersion('1.9.0'):
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if axis is None:
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if np.all(np.isnan(data)):
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return np.nan
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diff --git a/spectral_cube/spectral_cube.py b/spectral_cube/spectral_cube.py
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index 231245d..fa61119 100644
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--- a/spectral_cube/spectral_cube.py
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+++ b/spectral_cube/spectral_cube.py
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@@ -34,7 +34,7 @@ from .lower_dimensional_structures import (Projection, Slice, OneDSpectrum,
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LowerDimensionalObject)
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from .base_class import BaseNDClass, SpectralAxisMixinClass, DOPPLER_CONVENTIONS
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-from distutils.version import StrictVersion
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+from distutils.version import LooseVersion
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__all__ = ['SpectralCube', 'VaryingResolutionSpectralCube']
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@@ -2072,7 +2072,7 @@ class BaseSpectralCube(BaseNDClass, SpectralAxisMixinClass):
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import yt
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if ('dev' in yt.__version__ or
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- StrictVersion(yt.__version__) >= StrictVersion('3.0')):
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+ LooseVersion(yt.__version__) >= LooseVersion('3.0')):
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from yt.frontends.fits.api import FITSDataset
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from yt.units.unit_object import UnitParseError
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diff --git a/spectral_cube/tests/test_masks.py b/spectral_cube/tests/test_masks.py
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index 9116cb3..42a2125 100644
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--- a/spectral_cube/tests/test_masks.py
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+++ b/spectral_cube/tests/test_masks.py
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@@ -14,7 +14,7 @@ from .. import (BooleanArrayMask, SpectralCube, LazyMask, LazyComparisonMask,
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FunctionMask, CompositeMask)
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from ..masks import is_broadcastable_and_smaller, dims_to_skip, view_of_subset
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-from distutils.version import StrictVersion
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+from distutils.version import LooseVersion
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def test_spectral_cube_mask():
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@@ -370,7 +370,7 @@ def test_flat_mask():
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assert np.all(cube.sum(axis=0)[mask_array] == mcube.sum(axis=0)[mask_array])
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assert np.all(np.isnan(mcube.sum(axis=0)[~mask_array]))
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-@pytest.mark.skipif(StrictVersion(np.__version__) < StrictVersion('1.7'),
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+@pytest.mark.skipif(LooseVersion(np.__version__) < LooseVersion('1.7'),
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reason='Numpy <1.7 does not support multi-slice indexing.')
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def test_flat_mask_spectral():
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cube, data = cube_and_raw('adv.fits')
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diff --git a/spectral_cube/tests/test_moments.py b/spectral_cube/tests/test_moments.py
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index 9b118fd..82eff40 100644
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--- a/spectral_cube/tests/test_moments.py
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+++ b/spectral_cube/tests/test_moments.py
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@@ -1,7 +1,7 @@
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from __future__ import print_function, absolute_import, division
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import warnings
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-from distutils.version import StrictVersion
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+from distutils.version import LooseVersion
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import pytest
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import numpy as np
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@@ -78,7 +78,7 @@ axis_order = pytest.mark.parametrize(('axis', 'order'),
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(1, 0), (1, 1), (1, 2),
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(2, 0), (2, 1), (2, 2)))
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-if StrictVersion(astropy.__version__[:3]) >= StrictVersion('1.0'):
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+if LooseVersion(astropy.__version__[:3]) >= LooseVersion('1.0'):
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# The relative error is slightly larger on astropy-dev
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# There is no obvious reason for this.
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rtol = 2e-7
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diff --git a/spectral_cube/tests/test_spectral_cube.py b/spectral_cube/tests/test_spectral_cube.py
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index 025e6bd..4dce3bb 100644
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--- a/spectral_cube/tests/test_spectral_cube.py
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+++ b/spectral_cube/tests/test_spectral_cube.py
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@@ -4,7 +4,7 @@ import operator
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import itertools
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import warnings
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import mmap
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-from distutils.version import StrictVersion, LooseVersion
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+from distutils.version import LooseVersion, LooseVersion
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# needed to test for warnings later
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warnings.simplefilter('always', UserWarning)
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@@ -468,12 +468,12 @@ class TestNumpyMethods(BaseTest):
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scmed = self.c.apply_numpy_function(np.median, axis=0)
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# this checks whether numpy <=1.9.3 has a bug?
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# as far as I can tell, np==1.9.3 no longer has this bug/feature
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- #if StrictVersion(np.__version__) <= StrictVersion('1.9.3'):
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+ #if LooseVersion(np.__version__) <= LooseVersion('1.9.3'):
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# # print statements added so we get more info in the travis builds
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- # print("Numpy version is: {0}".format(StrictVersion(np.__version__)))
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+ # print("Numpy version is: {0}".format(LooseVersion(np.__version__)))
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# assert np.count_nonzero(np.isnan(scmed)) == 5
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#else:
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- # print("Numpy version is: {0}".format(StrictVersion(np.__version__)))
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+ # print("Numpy version is: {0}".format(LooseVersion(np.__version__)))
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assert np.count_nonzero(np.isnan(scmed)) == 6
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scmed = self.c.apply_numpy_function(np.nanmedian, axis=0)
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@@ -667,7 +667,7 @@ def test_read_write_rountrip(tmpdir):
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assert cube.shape == cube.shape
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assert_allclose(cube._data, cube2._data)
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if (((hasattr(_wcs, '__version__')
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- and StrictVersion(_wcs.__version__) < StrictVersion('5.9'))
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+ and LooseVersion(_wcs.__version__) < LooseVersion('5.9'))
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or not hasattr(_wcs, '__version__'))):
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# see https://github.com/astropy/astropy/pull/3992 for reasons:
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# we should upgrade this for 5.10 when the absolute accuracy is
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