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Author SHA1 Message Date
Arthur Zamarin d0d3d8a390 net-libs/librsync: Stabilize 2.3.4 amd64, #932595 
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
 2024-05-24 13:00:43 +03:00
David Seifert a300fad43f sci-biology/pysam: drop 0.21.0 
Closes: https://bugs.gentoo.org/923243
Closes: https://bugs.gentoo.org/927872
Closes: https://bugs.gentoo.org/929754
Signed-off-by: David Seifert <soap@gentoo.org>
 2024-05-24 11:54:01 +02:00
David Seifert baa67260b0 sci-biology/pysam: add 0.22.1 
Signed-off-by: David Seifert <soap@gentoo.org>
 2024-05-24 11:53:59 +02:00
Volkmar W. Pogatzki 45bce3abcc net-vpn/i2p: restrict to >=virtual/jdk-11:* for #932030 
- Updates to >=dev-java/ant-1.10.14-r3
- Removes obsolete check for MERGE_VM

Closes: https://bugs.gentoo.org/932030
Signed-off-by: Volkmar W. Pogatzki <gentoo@pogatzki.net>
Closes: https://github.com/gentoo/gentoo/pull/36717
Signed-off-by: Florian Schmaus <flow@gentoo.org>
 2024-05-24 11:42:47 +02:00
Matthew Smith a095d139a2 dev-lang/erlang: ignore pthread_set_name_np implicit decl 
pthread_set_name_np is defined in OpenBSD and FreeBSD. It is expected to
fail on Linux systems.

Bug: https://bugs.gentoo.org/898762
Signed-off-by: Matthew Smith <matthew@gentoo.org>
 2024-05-24 09:09:15 +00:00
David Seifert 4cb7398835 sci-biology/bcftools: add 1.20 
Signed-off-by: David Seifert <soap@gentoo.org>
 2024-05-24 10:59:51 +02:00
David Seifert 6da5b35501 sci-biology/samtools: add 1.20 
Signed-off-by: David Seifert <soap@gentoo.org>
 2024-05-24 10:59:50 +02:00
David Seifert dda90e924c sci-libs/htslib: add 1.20 
Signed-off-by: David Seifert <soap@gentoo.org>
 2024-05-24 10:59:49 +02:00
David Seifert 5fd841ad6f sci-libs/htslib: drop 1.17 
Signed-off-by: David Seifert <soap@gentoo.org>
 2024-05-24 10:59:48 +02:00
David Seifert 3e20bdaea3 sci-biology/samtools: drop 1.17 
Signed-off-by: David Seifert <soap@gentoo.org>
 2024-05-24 10:59:46 +02:00
David Seifert 1af696627e sci-biology/bcftools: drop 1.17 
Signed-off-by: David Seifert <soap@gentoo.org>
 2024-05-24 10:59:45 +02:00
David Seifert ccce71a385 sci-biology/raxml: drop 7.2.6 
Closes: https://bugs.gentoo.org/822408
Closes: https://bugs.gentoo.org/831489
Signed-off-by: David Seifert <soap@gentoo.org>
 2024-05-24 10:44:40 +02:00
David Seifert 48c3969c6b sci-biology/raxml: add 8.2.13 
Bug: https://bugs.gentoo.org/822408
Bug: https://bugs.gentoo.org/831489
Signed-off-by: David Seifert <soap@gentoo.org>
 2024-05-24 10:44:39 +02:00
Hans de Graaff 46b5c98512 dev-ruby/getoptlong: new package, add 0.2.1 
This code is extraced from dev-lang/ruby and inherits its set of
KEYWORDS.

Signed-off-by: Hans de Graaff <graaff@gentoo.org>
 2024-05-24 10:29:36 +02:00
David Seifert 6150ffedb8 app-crypt/yubioath-flutter-bin: add 7.0.0 
Signed-off-by: David Seifert <soap@gentoo.org>
 2024-05-24 10:04:22 +02:00
Joonas Niilola 55498cc2b2 net-p2p/retroshare: drop deprecated qtscript dep from 0.6.7 
- at least it's not linked to RDEPEND.

Signed-off-by: Joonas Niilola <juippis@gentoo.org>
 2024-05-24 10:50:33 +03:00
gentoo-setan 9dd6ba06e9 net-p2p/retroshare: add 0.6.7 
Closes: https://bugs.gentoo.org/927207
Closes: https://github.com/gentoo/gentoo/pull/36697
Signed-off-by: Joonas Niilola <juippis@gentoo.org>
 2024-05-24 10:50:11 +03:00
Hans de Graaff b63f463858 dev-ruby/sys-filesystem: add 1.4.5 
Signed-off-by: Hans de Graaff <graaff@gentoo.org>
 2024-05-24 09:35:52 +02:00
Hans de Graaff 2f72b6f2b5 dev-ruby/fast_gettext: add 3.0.0 
Signed-off-by: Hans de Graaff <graaff@gentoo.org>
 2024-05-24 09:35:46 +02:00
Christopher Byrne 86c7a43e7b app-crypt/tpm2-tss: drop 4.1.1, 4.1.1-r1 
Signed-off-by: Christopher Byrne <salah.coronya@gmail.com>
Closes: https://github.com/gentoo/gentoo/pull/36761
Signed-off-by: Sam James <sam@gentoo.org>
 2024-05-24 07:52:51 +01:00
Christopher Byrne e1bdd9fe49 app-crypt/tpm2-tss: add 4.1.3 
Closes: https://bugs.gentoo.org/931885
Signed-off-by: Christopher Byrne <salah.coronya@gmail.com>
Signed-off-by: Sam James <sam@gentoo.org>
 2024-05-24 07:52:50 +01:00
Sam James e7f0dba876 dev-libs/libgpg-error: Stabilize 1.49 ppc, #932599 
Signed-off-by: Sam James <sam@gentoo.org>
 2024-05-24 07:29:20 +01:00
Sam James 0fac55c67f dev-libs/libgpg-error: Stabilize 1.49 arm64, #932599 
Signed-off-by: Sam James <sam@gentoo.org>
 2024-05-24 07:29:19 +01:00
Sam James c97768543b dev-libs/libgpg-error: Stabilize 1.49 amd64, #932599 
Signed-off-by: Sam James <sam@gentoo.org>
 2024-05-24 07:29:18 +01:00
Sam James 0723e78107 dev-libs/libgpg-error: Stabilize 1.49 x86, #932599 
Signed-off-by: Sam James <sam@gentoo.org>
 2024-05-24 07:29:17 +01:00
Sam James 0109c297fc dev-libs/libgpg-error: Stabilize 1.49 ppc64, #932599 
Signed-off-by: Sam James <sam@gentoo.org>
 2024-05-24 07:29:16 +01:00
Sam James fcebc6ceb2 dev-libs/libgpg-error: Stabilize 1.49 arm, #932599 
Signed-off-by: Sam James <sam@gentoo.org>
 2024-05-24 07:29:15 +01:00
Sam James 617b657f25 media-libs/mesa: add another bug ref for LTO issue 
I hadn't seen this bug / clocked it was mesa/LTO related until after
I committed the workaround. Add a reference now we know they're linked.

Bug: https://bugs.gentoo.org/932591
Signed-off-by: Sam James <sam@gentoo.org>
 2024-05-24 07:28:32 +01:00
Sam James 458e5cbd2a profiles: unmask >=gentoo-functions-1.0 
Signed-off-by: Sam James <sam@gentoo.org>
 2024-05-24 07:22:27 +01:00
Arthur Zamarin 0c39854956 media-video/qmplay2: add 24.05.23 
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
 2024-05-24 09:18:11 +03:00
Sam James 8bdb31ed53 dev-libs/libgpg-error: drop need for eautoreconf 
Prefix doesn't bootstrap gettext so autopoint run as part of autoreconf fails.

Changes:
* We can replace the need for patch with a stub script which always exits w/ 0.
* Update the sed for Solaris to work on both configure.ac & configure
  (while it does assume /bin/sh is a suitable shell, the old fix did too,
  as the case statement would fallback to it, so this is functionally equivalent).

Bug: https://bugs.gentoo.org/932598
Signed-off-by: Sam James <sam@gentoo.org>
 2024-05-24 07:11:21 +01:00
Sam James 85e53db5c4 profiles: drop stale zfs mask 
Signed-off-by: Sam James <sam@gentoo.org>
 2024-05-24 07:10:20 +01:00
Sam James 5628422d48 profiles: drop stale kernel mask 
Signed-off-by: Sam James <sam@gentoo.org>
 2024-05-24 07:10:02 +01:00
Sam James d95d5adab5 profiles: drop shadowed stale openssl mask 
... as <openssl-3 is masked already.

Signed-off-by: Sam James <sam@gentoo.org>
 2024-05-24 07:09:08 +01:00
Sam James 7a1a83c373 profiles: drop stale cython mask 
Signed-off-by: Sam James <sam@gentoo.org>
 2024-05-24 07:08:31 +01:00
Sam James 926a65c74a profiles: drop stale btrfs-progs mask 
Signed-off-by: Sam James <sam@gentoo.org>
 2024-05-24 07:08:06 +01:00
Sam James fa6d1a279b sys-apps/gentoo-functions: add 1.6 
Kerin Millar (15):
      test-functions: Actually remove print_args()
      Significantly improve _print_args() behaviour
      Have edo() clarify that something is being executed
      Micro-optimise _print_args()
      Add an eqatag() function
      test-functions: Include /opt/pkg/bin in PATH
      Have _print_args() produce octal sequences for DEL
      Correct an awk else clause in _print_args()
      Render argument checking more stringent; standardise diagnostics
      Adhere to the Allman style (again)
      test-functions: Render tests somewhat fast again
      test-functions: Minor ebegin() test refactoring
      Explain why is_older_than() checks for the presence of gfind
      Micro-optimise the eqatag() argument parsing loop
      Correct the wrapping of a comment

Sam James (1):
      meson.build: prepare for gentoo-functions-1.6

Signed-off-by: Sam James <sam@gentoo.org>
 2024-05-24 07:05:44 +01:00
Sam James 9aa2b1a14f sys-apps/util-linux: skip flaky rename/subdir test 
It passes for me on re-runs.

Signed-off-by: Sam James <sam@gentoo.org>
 2024-05-24 07:03:52 +01:00
Sam James 2596416614 sys-devel/gcc: add 12.3.1_p20240523 
Signed-off-by: Sam James <sam@gentoo.org>
 2024-05-24 07:03:51 +01:00
Sam James 09d6f01d0c sys-devel/gcc: add 11.4.1_p20240522 
Signed-off-by: Sam James <sam@gentoo.org>
 2024-05-24 07:03:51 +01:00
Arthur Zamarin 9c12a519d1 sys-libs/rpmatch-standalone: Stabilize 1.0-r1 ppc64, #932569 
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
 2024-05-24 08:32:54 +03:00
Arthur Zamarin 4686ee1a91 sys-libs/rpmatch-standalone: Stabilize 1.0-r1 ppc, #932569 
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
 2024-05-24 08:32:51 +03:00
Arthur Zamarin b83da70012 sys-libs/rpmatch-standalone: Stabilize 1.0-r1 arm64, #932569 
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
 2024-05-24 08:32:49 +03:00
Arthur Zamarin 9f3712c2d3 sys-libs/rpmatch-standalone: Stabilize 1.0-r1 arm, #932569 
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
 2024-05-24 08:32:46 +03:00
Arthur Zamarin c765ee7c67 sys-libs/rpmatch-standalone: Stabilize 1.0-r1 x86, #932569 
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
 2024-05-24 08:32:43 +03:00
Arthur Zamarin 77e61b9f08 sys-libs/rpmatch-standalone: Stabilize 1.0-r1 amd64, #932569 
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
 2024-05-24 08:32:40 +03:00
Michał Górny f44920b80b dev-python/jupyter-client: Bump to 8.6.2 
Signed-off-by: Michał Górny <mgorny@gentoo.org>
 2024-05-24 06:03:13 +02:00
Michał Górny 5b917a12cd dev-python/sphobjinv: Bump to 2.3.1.1 
Signed-off-by: Michał Górny <mgorny@gentoo.org>
 2024-05-24 06:03:12 +02:00
Michał Górny 61d1e8b22d dev-python/pypugjs: Bump to 5.10.1 
Signed-off-by: Michał Górny <mgorny@gentoo.org>
 2024-05-24 06:03:11 +02:00
Michał Górny c66607ddd0 dev-python/sphinx-autoapi: Bump to 3.1.1 
Signed-off-by: Michał Górny <mgorny@gentoo.org>
 2024-05-24 06:03:10 +02:00