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Author SHA1 Message Date
David Seifert f2aa1e360d sci-biology/embassy-iprscan: Port to emboss-r2.eclass 
Package-Manager: portage-2.3.1
Closes: https://github.com/gentoo/gentoo/pull/3937
 2017-02-19 19:42:49 +01:00
David Seifert 03ac4054f3 sci-biology/embassy-hmmer: Port to emboss-r2.eclass 
Package-Manager: portage-2.3.1
Closes: https://github.com/gentoo/gentoo/pull/3937
 2017-02-19 19:42:46 +01:00
David Seifert 674e1c0d81 sci-biology/embassy-esim4: Port to emboss-r2.eclass 
Package-Manager: portage-2.3.1
Closes: https://github.com/gentoo/gentoo/pull/3937
 2017-02-19 19:42:43 +01:00
David Seifert 0bf6e3ebdc sci-biology/embassy-emnu: Port to emboss-r2.eclass 
Package-Manager: portage-2.3.1
Closes: https://github.com/gentoo/gentoo/pull/3937
 2017-02-19 19:42:39 +01:00
David Seifert 9aef52d5b1 sci-biology/embassy-domsearch: Port to emboss-r2.eclass 
Package-Manager: portage-2.3.1
Closes: https://github.com/gentoo/gentoo/pull/3937
 2017-02-19 19:42:36 +01:00
David Seifert fe37501b43 sci-biology/embassy-domalign: Port to emboss-r2.eclass 
Package-Manager: portage-2.3.1
Closes: https://github.com/gentoo/gentoo/pull/3937
 2017-02-19 19:42:33 +01:00
David Seifert 4afd87117c sci-biology/embassy-domainatrix: Port to emboss-r2.eclass 
Package-Manager: portage-2.3.1
Closes: https://github.com/gentoo/gentoo/pull/3937
 2017-02-19 19:42:29 +01:00
David Seifert 04c82d4626 sci-biology/embassy-clustalomega: Port to emboss-r2.eclass 
Package-Manager: portage-2.3.1
Closes: https://github.com/gentoo/gentoo/pull/3937
 2017-02-19 19:42:26 +01:00
David Seifert 97a27fd219 sci-biology/embassy-cbstools: Port to emboss-r2.eclass 
Package-Manager: portage-2.3.1
Closes: https://github.com/gentoo/gentoo/pull/3937
 2017-02-19 19:42:23 +01:00
David Seifert 80392a26af sci-biology/emboss: Port to emboss-r2.eclass 
Package-Manager: portage-2.3.1
Closes: https://github.com/gentoo/gentoo/pull/3937
 2017-02-19 19:42:19 +01:00
David Seifert 6694249ce8 emboss-r2.eclass: Make EAPI=6 only, simplify 
Closes: https://github.com/gentoo/gentoo/pull/3937
 2017-02-19 19:42:16 +01:00
Andreas K. Hüttel 3b694ede62 app-text/a2ps: Remove old 
Package-Manager: Portage-2.3.3, Repoman-2.3.1
 2017-02-19 19:36:43 +01:00
Mike Gilbert 8ea3afc5d0 dev-python/execnet: restrict test phase 
Several tests are unreliable on amd64, and they segfault on alpha.

Bug: https://bugs.gentoo.org/609520
Package-Manager: Portage-2.3.3_p56, Repoman-2.3.1_p49
 2017-02-19 13:36:33 -05:00
Gerhard Bräunlich 1ca8e75dce sci-mathematics/gfan: Remove EAPI 3 ebuild 
Package-Manager: portage-2.3.3
Closes: https://github.com/gentoo/gentoo/pull/4031
 2017-02-19 19:35:56 +01:00
Gerhard Bräunlich 8f92928344 sci-mathematics/cado-nfs: Removing EAPI 4 ebuilds 
Package-Manager: portage-2.3.3
Closes: https://github.com/gentoo/gentoo/pull/4030
 2017-02-19 19:20:34 +01:00
Sergei Trofimovich aa3c28baa0 dev-scheme/guile: fix CFLAGS=-gddb3 build failure, bug#608190 
guile-snarf uses cpp to get rid of comments, #defines
and type declarations in C code. But in -ggdb3 mode gcc
leaves all of them in the output.

The workaround is to downgrade -ggdb3 down to -ggdb2.

Bug: https://bugs.gentoo.org/608190

Package-Manager: Portage-2.3.3, Repoman-2.3.1
 2017-02-19 18:14:56 +00:00
William Hubbs 4296f891e8 golang-base.eclass: raise go version to 1.7 for #607086 2017-02-19 12:12:12 -06:00
Mike Gilbert 1d56d28e26 dev-python/attrs: suppress too_slow health check on test_recurse_property 
Bug: https://bugs.gentoo.org/608570
Package-Manager: Portage-2.3.3_p56, Repoman-2.3.1_p49
 2017-02-19 13:09:01 -05:00
Andreas K. Hüttel eb36e07061 media-libs/jbig2dec: Add patch for CVE-2016-9601, bug 607188 
Package-Manager: Portage-2.3.3, Repoman-2.3.1
 2017-02-19 18:50:30 +01:00
Mike Gilbert 5c5eb3f808 dev-python/pyopenssl: use pytest collector 
Also disable test_set_default_verify_paths, which requires network
access.

Bug: https://bugs.gentoo.org/601332
Package-Manager: Portage-2.3.3_p56, Repoman-2.3.1_p49
 2017-02-19 12:46:20 -05:00
Marek Szuba 14d0fb0e97 dev-libs/beignet: require slot 0 of sys-devel/llvm and sys-devel/clang 
QA issues aside, at present Beignet doesn't support any version of LLVM newer
than 3.9.x.

Package-Manager: portage-2.3.3
 2017-02-19 18:45:37 +01:00
Marek Szuba 8bff9d9507 dev-libs/beignet: remove old 
Package-Manager: portage-2.3.3
 2017-02-19 18:45:37 +01:00
Sebastian Pipping 0d71252e84 app-portage/porticron: 0.7.1 
Package-Manager: Portage-2.3.3, Repoman-2.3.1
 2017-02-19 18:41:32 +01:00
maram 88dbd85dd5 dev-python/setuptools_scm: Install package for testing 
The test suite fails unless the package is already installed.

Bug: https://bugs.gentoo.org/show_bug.cgi?id=609648
 2017-02-19 12:18:31 -05:00
Mike Gilbert 40b48d2223 dev-lang/python: bump to 3.5.3 
Package-Manager: Portage-2.3.3_p56, Repoman-2.3.1_p49
 2017-02-19 12:10:06 -05:00
Mike Gilbert 3e490a7c27 dev-lang/python: bump to 3.4.6 
Package-Manager: Portage-2.3.3_p56, Repoman-2.3.1_p49
 2017-02-19 12:10:06 -05:00
Mike Gilbert c276f3d9eb dev-lang/python: bump to 2.7.13 
Package-Manager: Portage-2.3.3_p56, Repoman-2.3.1_p49
 2017-02-19 12:10:06 -05:00
Andreas K. Hüttel d9daa618c8 net-libs/openslp: Add patch for CVE-2016-7567, bug 595542 
Package-Manager: Portage-2.3.3, Repoman-2.3.1
 2017-02-19 17:48:54 +01:00
David Seifert bfd2150a89 dev-ml/ocamlgsl: Remove from tree 2017-02-19 16:37:07 +01:00
Kent Fredric a197d1b1fb xfce-extra/xfce4-mount-plugin: Restore manifest change for metadata regen 
This is needed to update the actual dist manifest server side

This reverts commit 041e66c4c7.
 2017-02-20 04:32:18 +13:00
Kent Fredric 041e66c4c7 xfce-extra/xfce4-mount-plugin: Revert manifest change for regeneration 
This reverts commit c8b755cc8a.
 2017-02-20 04:31:48 +13:00
Kent Fredric ce41c28367 perl-core/{Digest,Term-ANSIColor,Test,Text-Balanced}: Dekeyword 
These are no longer referred to by any virtuals, but may again be
in future.

Do not install these unless you want to have problems.

These are mostly kept here to avoid needless metadata churn and
to avoid spurious last-riting.

Package-Manager: Portage-2.3.3, Repoman-2.3.1
 2017-02-20 04:22:29 +13:00
Kent Fredric 3aebbd0dc2 virtual/perl-*: -r bump for rdep propagation 
Package-Manager: Portage-2.3.3, Repoman-2.3.1
 2017-02-20 04:22:29 +13:00
Kent Fredric dbd1d38744 virtual/perl-*: Remove dependency on dev-lang/perl-5.20* 
Package-Manager: Portage-2.3.3, Repoman-2.3.1
 2017-02-20 04:22:28 +13:00
Kent Fredric 2777260fbd dev-lang/perl, virtual/perl-*: Cleanup 5.20* and eblits re bug #589680 and bug #586418 
Bug: https://bugs.gentoo.org/586418
Bug: https://bugs.gentoo.org/589680

Package-Manager: Portage-2.3.3, Repoman-2.3.1
 2017-02-20 04:22:28 +13:00
Kent Fredric 365f1c2ae6 dev-perl/PPIx-Regexp: Bump to version 0.51.0 
Upstream:
- Make perl_version_removed more robust against delimiters() being
  undef.
- Fix parsing embedded comments in bracketed substitution
- postderef defaults to true
- Parse unterminated s// as unknown token instead of exception
- Error when parsing /\b{/
- Support [] whitespace with /xx

Package-Manager: Portage-2.3.3, Repoman-2.3.1
 2017-02-20 04:21:23 +13:00
Kent Fredric d53fb92c15 dev-perl/Email-MIME: Bump to version 1.940.0 
- Add github remote id

Upstream:
- Pass all args to ->header to header_str
- Guard eval calls in narrower scope
- Remove unused private _address_encode method
- Use case-insensitive header decoding routines
- Ensure MIME header encoding when a value contains non-ascii,
  "=?", sequences of 78 or more non-whitespace characters, or
  leading whitespace
- first line of string generated by mime_encode() is now ensured
  to be less than 76 characters (including the header itself) to
  avoid premature folding.
- Remove redundant private functions
- Warn when multipart messages are erroneously advertised as
  single part, and then upgrade to multipart.
- Do not decode headers that are known not to need it

Package-Manager: Portage-2.3.3, Repoman-2.3.1
 2017-02-20 04:21:22 +13:00
Michael Orlitzky 821085f14a dev-lang/php: restore php-7.0.15 temporarily. 
Due to a getrandom() detection bug, php-7.0.16 doesn't work with older
pre-3.17 Linux kernels. Let's put 7.0.15 back until that is resolved.
The best reference I have at the moment is the discussion on the
upstream commit:

https://github.com/php/php-src/commit/14c72cc5824d5fa472b79b7216a01be0918ccc5d

Gentoo-Bug: 574238

Package-Manager: portage-2.3.3
 2017-02-19 10:13:57 -05:00
Ulrich Müller d9900ff06a app-editors/emacs: Fix compilation with glibc-2.24. 
Bug: 602992

Package-Manager: Portage-2.3.3, Repoman-2.3.1
 2017-02-19 15:56:19 +01:00
Andreas Sturmlechner d987b36d3b app-accessibility/simon: DEPEND on qwt[qt4] 
Package-Manager: portage-2.3.3
 2017-02-19 15:45:29 +01:00
Andreas Sturmlechner 9cafc514db sci-geosciences/qgis: Drop old 
Package-Manager: portage-2.3.3
 2017-02-19 15:45:28 +01:00
Andreas Sturmlechner 46729cd305 sci-geosciences/qgis: Fix QtWebKit automagic 
Cleanup DEPENDs and src_configure.

Gentoo-bug: 609148
Reported-by: Luis Ressel <aranea@aixah.de>

Package-Manager: portage-2.3.3
 2017-02-19 15:45:21 +01:00
Justin Lecher a72b9b458a dev-python/ssl-fetch: Bump to EAPI=6 and git-r3.eclass 
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Signed-off-by: Justin Lecher <jlec@gentoo.org>
 2017-02-19 14:43:22 +00:00
Justin Lecher 091f88ca68 sys-kernel/aufs-sources: Bump to latest genpatches and linux release 
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Signed-off-by: Justin Lecher <jlec@gentoo.org>
 2017-02-19 14:43:21 +00:00
Justin Lecher bb039b91f2 sci-chemistry/chemical-mime-data: Drop unnecessary USE dep 
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=609560

Package-Manager: Portage-2.3.3, Repoman-2.3.1
Signed-off-by: Justin Lecher <jlec@gentoo.org>
 2017-02-19 14:43:21 +00:00
Justin Lecher 41762ec01c sci-libs/arpack: Drop old 
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Signed-off-by: Justin Lecher <jlec@gentoo.org>
 2017-02-19 14:42:57 +00:00
Michał Górny 237871a989 xfce-extra/xfce4-mount-plugin: Add missing ebuild for 1.1.1 2017-02-19 15:27:02 +01:00
Hans de Graaff 5932c0c0ee dev-ruby/slim: loosen dependency on temple 
Package-Manager: portage-2.3.3
 2017-02-19 15:05:40 +01:00
Michał Górny c8b755cc8a xfce-extra/xfce4-mount-plugin: Bump to 1.1.1 2017-02-19 14:52:00 +01:00
Agostino Sarubbo 83485937be dev-php/pear: x86 stable wrt bug #609552 
Package-Manager: portage-2.3.3
RepoMan-Options: --include-arches="x86"
Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
 2017-02-19 14:33:35 +01:00