diff --git a/net-analyzer/munin/metadata.xml b/net-analyzer/munin/metadata.xml
index df14a4c78fe6d..591d8ce60e475 100644
--- a/net-analyzer/munin/metadata.xml
+++ b/net-analyzer/munin/metadata.xml
@@ -71,11 +71,6 @@
       web pages and graphs. This is only meaningful if the minimal USE
       flag is disabled.
     </flag>
-    <flag name="apache">
-      Set up the configuration of the CGI generation of HTML and
-      graphs to work with Apache. This also install an include-able
-      configuration file.
-    </flag>
     <flag name="ipv6">
       Add support for IPv6 in munin-node. IPv6 support for the master
       is always enabled, but the node requires a newer version of
diff --git a/net-analyzer/munin/munin-2.0.49.ebuild b/net-analyzer/munin/munin-2.0.49.ebuild
index caf8f3564d6e3..42bf360e6029d 100644
--- a/net-analyzer/munin/munin-2.0.49.ebuild
+++ b/net-analyzer/munin/munin-2.0.49.ebuild
@@ -17,7 +17,7 @@ SRC_URI="
 
 LICENSE="GPL-2"
 SLOT="0"
-KEYWORDS="~amd64 ~arm ~ppc ~x86"
+KEYWORDS="amd64 ~arm ppc x86"
 IUSE="asterisk irc java ldap memcached minimal mysql postgres selinux ssl test cgi ipv6 syslog ipmi http dhcpd doc apache2"
 REQUIRED_USE="cgi? ( !minimal ) apache2? ( cgi )"
 
diff --git a/net-analyzer/munin/munin-2.1.9999.ebuild b/net-analyzer/munin/munin-2.1.9999.ebuild
deleted file mode 100644
index d041ec7f41956..0000000000000
--- a/net-analyzer/munin/munin-2.1.9999.ebuild
+++ /dev/null
@@ -1,381 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit eutils user java-pkg-opt-2 git-2
-
-EGIT_REPO_URI="https://github.com/munin-monitoring/${PN}.git"
-
-DESCRIPTION="Munin Server Monitoring Tool"
-HOMEPAGE="http://munin-monitoring.org/"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS=""
-IUSE="irc java memcached minimal mysql postgres selinux ssl test cgi ipv6 syslog ipmi http dhcpd doc apache"
-REQUIRED_USE="cgi? ( !minimal ) apache? ( cgi )"
-
-# Upstream's listing of required modules is NOT correct!
-# Some of the postgres plugins use DBD::Pg, while others call psql directly.
-# Some of the mysql plugins use DBD::mysql, while others call mysqladmin directly.
-# We replace the original ipmi plugins with the freeipmi_ plugin which at least works.
-DEPEND_COM="dev-lang/perl:=[berkdb]
-			sys-process/procps
-			doc? ( dev-python/sphinx )
-			irc? ( dev-perl/Net-IRC )
-			mysql? ( virtual/mysql
-					 dev-perl/Cache-Cache
-					 dev-perl/DBD-mysql )
-			ssl? ( dev-perl/Net-SSLeay )
-			postgres? ( dev-perl/DBD-Pg dev-db/postgresql )
-			memcached? ( dev-perl/Cache-Memcached )
-			cgi? ( dev-perl/FCGI )
-			apache? ( www-servers/apache[apache2_modules_cgi,apache2_modules_cgid,apache2_modules_rewrite] )
-			syslog? ( virtual/perl-Sys-Syslog )
-			http? ( dev-perl/libwww-perl )
-			dhcpd? (
-				>=net-misc/dhcp-3[server]
-				dev-perl/Net-IP
-				dev-perl/HTTP-Date
-			)
-			dev-perl/DBI
-			dev-perl/Date-Manip
-			dev-perl/File-Copy-Recursive
-			dev-perl/List-MoreUtils
-			dev-perl/Log-Log4perl
-			dev-perl/Net-CIDR
-			dev-perl/Net-Netmask
-			dev-perl/Net-SNMP
-			dev-perl/Net-Server[ipv6(-)?]
-			virtual/perl-Digest-MD5
-			virtual/perl-Getopt-Long
-			virtual/perl-MIME-Base64
-			virtual/perl-Storable
-			virtual/perl-Text-Balanced
-			virtual/perl-Time-HiRes
-			!minimal? (
-				dev-perl/HTML-Template
-				dev-perl/IO-Socket-INET6
-				dev-perl/URI
-				>=net-analyzer/rrdtool-1.3[graph,perl]
-				virtual/ssh
-			)"
-
-# Keep this seperate, as previous versions have had other deps here
-DEPEND="${DEPEND_COM}
-	dev-perl/Module-Build
-	java? ( >=virtual/jdk-1.5 )
-	test? (
-		dev-perl/Test-Deep
-		dev-perl/Test-LongString
-		dev-perl/Test-Differences
-		dev-perl/Test-MockModule
-		dev-perl/Test-MockObject
-		dev-perl/File-Slurp
-		dev-perl/IO-stringy
-		dev-perl/IO-Socket-INET6
-	)"
-RDEPEND="${DEPEND_COM}
-		virtual/awk
-		ipmi? ( >=sys-libs/freeipmi-1.1.6-r1 )
-		java? (
-			>=virtual/jre-1.5
-			|| ( net-analyzer/netcat6 net-analyzer/netcat )
-		)
-		!minimal? (
-			virtual/cron
-			media-fonts/dejavu
-		)
-		selinux? ( sec-policy/selinux-munin )
-		!<sys-apps/openrc-0.11.8"
-
-pkg_setup() {
-	enewgroup munin
-	enewuser munin 177 -1 /var/lib/munin munin
-	enewuser munin-async -1 /bin/sh /var/spool/munin-async
-	esethome munin-async /var/spool/munin-async
-	java-pkg-opt-2_pkg_setup
-}
-
-src_prepare() {
-	java-pkg-opt-2_src_prepare
-}
-
-src_configure() {
-	local cgidir='$(DESTDIR)/usr/libexec/munin/cgi'
-	use cgi || cgidir="${T}/useless/cgi-bin"
-
-	local cgiuser=$(usex apache apache munin)
-
-	cat - >> "${S}"/Makefile.config <<EOF
-PREFIX=\$(DESTDIR)/usr
-CONFDIR=\$(DESTDIR)/etc/munin
-DOCDIR=${T}/useless/doc
-MANDIR=\$(PREFIX)/share/man
-LIBDIR=\$(PREFIX)/libexec/munin
-HTMLDIR=\$(DESTDIR)/var/www/localhost/htdocs/munin
-CGIDIR=${cgidir}
-CGITMPDIR=\$(DESTDIR)/var/cache/munin-cgi
-CGIUSER=${cgiuser}
-DBDIR=\$(DESTDIR)/var/lib/munin
-DBDIRNODE=\$(DESTDIR)/var/lib/munin-node
-SPOOLDIR=\$(DESTDIR)/var/spool/munin-async
-LOGDIR=\$(DESTDIR)/var/log/munin
-PERLSITELIB=$(perl -V:vendorlib | cut -d"'" -f2)
-JCVALID=$(usex java yes no)
-STATEDIR=\$(DESTDIR)/run/munin
-EOF
-}
-
-# parallel make and install need to be fixed before, and I haven't
-# gotten around to do so yet.
-src_compile() {
-	emake -j1
-	if use doc; then
-		emake -C doc html
-	fi
-}
-
-src_test() {
-	if [[ ${EUID} == 0 ]]; then
-		eerror "You cannot run tests as root."
-		eerror "Please enable FEATURES=userpriv before proceeding."
-		return 1
-	fi
-
-	local testtargets="test-common test-node test-plugins"
-	use minimal || testtargets+=" test-master"
-
-	LC_ALL=C emake -j1 ${testtargets}
-}
-
-src_install() {
-	local dirs="
-		/var/log/munin
-		/var/lib/munin/plugin-state
-		/etc/munin/plugin-conf.d
-		/etc/munin/plugins"
-	use minimal || dirs+=" /etc/munin/munin-conf.d/"
-
-	keepdir ${dirs}
-	fowners munin:munin ${dirs}
-
-	# parallel install doesn't work and it's also pointless to have this
-	# run in parallel for now (because it uses internal loops).
-	emake -j1 DESTDIR="${D}" $(usex minimal "install-minimal install-man" install)
-
-	# we remove /run from the install, as it's not the package's to deal
-	# with.
-	rm -rf "${D}"/run
-
-	# remove the plugins for non-Gentoo package managers
-	rm "${D}"/usr/libexec/munin/plugins/{apt{,_all},yum} || die
-
-	insinto /etc/munin/plugin-conf.d/
-	newins "${FILESDIR}"/${PN}-1.3.2-plugins.conf munin-node
-
-	newinitd "${FILESDIR}"/munin-node_init.d_2.0.7 munin-node
-	newconfd "${FILESDIR}"/munin-node_conf.d_1.4.6-r2 munin-node
-
-	newinitd "${FILESDIR}"/munin-asyncd.init.2 munin-asyncd
-
-	cat - >> "${T}"/munin.env <<EOF
-CONFIG_PROTECT=/var/spool/munin-async/.ssh
-EOF
-	newenvd "${T}"/munin.env 50munin
-
-	dodoc README.rst ChangeLog INSTALL
-	if use doc; then
-		cd "${S}"/doc/_build/html
-		dohtml -r *
-		cd "${S}"
-	fi
-
-	dodir /etc/logrotate.d/
-	sed -e "s:@CGIUSER@:$(usex apache apache munin):g" \
-		"${FILESDIR}"/logrotate.d-munin.3 > "${D}"/etc/logrotate.d/munin
-
-	dosym ipmi_ /usr/libexec/munin/plugins/ipmi_sensor_
-
-	if use syslog; then
-		sed -i -e '/log_file/s| .*| Sys::Syslog|' \
-			"${D}"/etc/munin/munin-node.conf || die
-	fi
-
-	# Use a simpler pid file to avoid trouble with /run in tmpfs. The
-	# munin-node service is ran as user root, and only later drops
-	# privileges.
-	sed -i -e 's:/run/munin/munin-node.pid:/run/munin-node.pid:' \
-		"${D}"/etc/munin/munin-node.conf || die
-
-	keepdir /var/spool/munin-async/.ssh
-	touch "${D}"/var/spool/munin-async/.ssh/authorized_keys
-	fowners munin-async:munin /var/spool/munin-async{,/.ssh/{,authorized_keys}}
-	fperms 0750 /var/spool/munin-async{,/.ssh}
-	fperms 0600 /var/spool/munin-async/.ssh/authorized_keys
-
-	if use minimal; then
-		# This requires the presence of munin-update, which is part of
-		# the non-minimal install...
-		rm "${D}"/usr/libexec/munin/plugins/munin_stats
-	else
-		dodir /usr/lib/tmpfiles.d
-		cat - > "${D}"/usr/lib/tmpfiles.d/${CATEGORY}:${PN}:${SLOT}.conf <<EOF
-d /run/munin 0700 munin munin - -
-EOF
-
-		# remove font files so that we don't have to keep them around
-		rm "${D}"/usr/libexec/${PN}/*.ttf || die
-
-		if use cgi; then
-			sed -i -e '/#graph_strategy cgi/s:^#::' "${D}"/etc/munin/munin.conf || die
-
-			keepdir /var/cache/munin-cgi
-			touch "${D}"/var/log/munin/munin-cgi-{graph,html}.log
-			fowners $(usex apache apache munin) \
-				/var/cache/munin-cgi \
-				/var/log/munin/munin-cgi-{graph,html}.log
-
-			if use apache; then
-				insinto /etc/apache2/vhosts.d
-				newins "${FILESDIR}"/munin.apache.include munin.include
-				newins "${FILESDIR}"/munin.apache.include-2.4 munin-2.4.include
-			fi
-		else
-			sed -i -e '/#graph_strategy cgi/s:#graph_strategy cgi:graph_strategy cron:' "${D}"/etc/munin/munin.conf || die
-		fi
-
-		keepdir /var/lib/munin/.ssh
-		cat - >> "${D}"/var/lib/munin/.ssh/config <<EOF
-IdentityFile /var/lib/munin/.ssh/id_ecdsa
-IdentityFile /var/lib/munin/.ssh/id_rsa
-EOF
-
-		fowners munin:munin /var/lib/munin/.ssh/{,config}
-		fperms go-rwx /var/lib/munin/.ssh/{,config}
-
-		dodir /usr/share/${PN}
-		cat - >> "${D}"/usr/share/${PN}/crontab <<EOF
-# Force the shell to bash
-SHELL=/bin/bash
-# Mail reports to root@, not munin@
-MAILTO=root
-
-# This runs the munin task every 5 minutes.
-*/5	* * * *		/usr/bin/munin-cron
-
-# Alternatively, this route works differently
-# Update once a minute (for busy sites)
-#*/1 * * * *		/usr/libexec/munin/munin-update
-## Check for limit excess every 2 minutes
-#*/2 * * * *		/usr/libexec/munin/munin-limits
-## Update graphs every 5 minutes
-#*/5 * * * *		nice /usr/libexec/munin/munin-graph
-## Update HTML pages every 15 minutes
-#*/15 * * * *		nice /usr/libexec/munin/munin-html
-EOF
-
-		cat - >> "${D}"/usr/share/${PN}/fcrontab <<EOF
-# Mail reports to root@, not munin@, only execute one at a time
-!mailto(root),serial(true)
-
-# This runs the munin task every 5 minutes.
-@ 5		/usr/bin/munin-cron
-
-# Alternatively, this route works differently
-# Update once a minute (for busy sites)
-#@ 1	/usr/libexec/munin/munin-update
-## Check for limit excess every 2 minutes
-#@ 2	/usr/libexec/munin/munin-limits
-## Update graphs every 5 minutes
-#@ 5	nice /usr/libexec/munin/munin-graph
-## Update HTML pages every 15 minutes
-#@ 15	nice /usr/libexec/munin/munin-html
-EOF
-
-		# remove .htaccess file
-		find "${D}" -name .htaccess -delete || die
-	fi
-}
-
-pkg_config() {
-	if use minimal; then
-		einfo "Nothing to do."
-		return 0
-	fi
-
-	einfo "Press enter to install the default crontab for the munin master"
-	einfo "installation from /usr/share/${PN}/f?crontab"
-	einfo "If you have a large site, you may wish to customize it."
-	read
-
-	ebegin "Setting up cron ..."
-	if has_version sys-process/fcron; then
-		fcrontab - -u munin < /usr/share/${PN}/fcrontab
-	else
-		# dcron is very fussy about syntax
-		# the following is the only form that works in BOTH dcron and vixie-cron
-		crontab - -u munin < /usr/share/${PN}/crontab
-	fi
-	eend $?
-
-	einfo "Press enter to set up the SSH keys used for SSH transport"
-	read
-
-	# generate one rsa (for legacy) and one ecdsa (for new systems)
-	ssh-keygen -t rsa -f /var/lib/munin/.ssh/id_rsa -N '' -C "created by portage for ${CATEGORY}/${PN}" || die
-	ssh-keygen -t ecdsa -f /var/lib/munin/.ssh/id_ecdsa -N '' -C "created by portage for ${CATEGORY}/${PN}" || die
-	chown -R munin:munin /var/lib/munin/.ssh || die
-	chmod 0600 /var/lib/munin/.ssh/id_{rsa,ecdsa} || die
-
-	einfo "Your public keys are available in "
-	einfo "  /var/lib/munin/.ssh/id_rsa.pub"
-	einfo "  /var/lib/munin/.ssh/id_ecdsa.pub"
-	einfo "and follows for convenience"
-	echo
-	cat /var/lib/munin/.ssh/id_*.pub
-}
-
-pkg_postinst() {
-	elog "Please follow the munin documentation to set up the plugins you"
-	elog "need, afterwards start munin-node via /etc/init.d/munin-node."
-	elog ""
-	elog "To make use of munin-async, make sure to set up the corresponding"
-	elog "SSH key in /var/lib/munin-async/.ssh/authorized_keys"
-	elog ""
-	if ! use minimal; then
-		elog "Please run"
-		elog "  emerge --config net-analyzer/munin"
-		elog "to automatically configure munin's cronjobs as well as generate"
-		elog "passwordless SSH keys to be used with munin-async."
-	fi
-	elog ""
-	elog "Further information about setting up Munin in Gentoo can be found"
-	elog "in the Gentoo Wiki: https://wiki.gentoo.org/wiki/Munin"
-
-	if use cgi; then
-		chown $(usex apache apache munin) \
-			"${ROOT}"/var/cache/munin-cgi \
-			"${ROOT}"/var/log/munin-cgi-{graph,html}.log
-
-		if use apache; then
-			elog "To use Munin with CGI you should include /etc/apache2/vhosts.d/munin.include"
-			elog "or /etc/apache2/vhosts.d/munin-2.4.include (for Apache 2.4) from the virtual"
-			elog "host you want it to be served."
-			elog "If you want to enable CGI-based HTML as well, you have to add to"
-			elog "/etc/conf.d/apache2 the option -D MUNIN_HTML_CGI."
-		else
-			elog "Effective CGI support has just been added in 2.0.7-r6."
-			elog "Documentation on how to use it is still sparse."
-		fi
-	fi
-
-	# we create this here as we don't want Portage to check /run
-	# symlinks but we still need this to be present before the reboot.
-	if ! use minimal && ! [[ -d "${ROOT}"/run/munin ]]; then
-		mkdir "${ROOT}"/run/munin
-		chown munin:munin "${ROOT}"/run/munin
-		chmod 0700 "${ROOT}"/run/munin
-	fi
-}