From 9a91c67cb04d0df9a15813bc9665686d6dd4ae08 Mon Sep 17 00:00:00 2001 From: David Seifert Date: Fri, 12 Jun 2026 23:50:30 +0200 Subject: [PATCH] sci-libs/htslib: drop 1.21, 1.22, 1.22.1, 1.23 Signed-off-by: David Seifert --- sci-libs/htslib/Manifest | 4 --- sci-libs/htslib/htslib-1.21.ebuild | 52 --------------------------- sci-libs/htslib/htslib-1.22.1.ebuild | 53 ---------------------------- sci-libs/htslib/htslib-1.22.ebuild | 53 ---------------------------- sci-libs/htslib/htslib-1.23.ebuild | 53 ---------------------------- 5 files changed, 215 deletions(-) delete mode 100644 sci-libs/htslib/htslib-1.21.ebuild delete mode 100644 sci-libs/htslib/htslib-1.22.1.ebuild delete mode 100644 sci-libs/htslib/htslib-1.22.ebuild delete mode 100644 sci-libs/htslib/htslib-1.23.ebuild diff --git a/sci-libs/htslib/Manifest b/sci-libs/htslib/Manifest index 126eb1c277fd3..fce2951cfeb6a 100644 --- a/sci-libs/htslib/Manifest +++ b/sci-libs/htslib/Manifest @@ -1,6 +1,2 @@ DIST htslib-1.20.tar.bz2 4779028 BLAKE2B def7a135f37a4c7a167ada554b92b0e0107ab3dcbdab69abdea387035159f40fb183477275c137b0d786fdfc7264303898f98c54acb1714f9b7cb21e22612143 SHA512 a156f5c895fdae77f976f463a2d4d1111dc056893ef45b7e9cf62e9115898bc8cb47465bb1779e534c26943df478892385d44646e97bd0fa67fceb83ef7a649b -DIST htslib-1.21.tar.bz2 4781943 BLAKE2B 7bbf62021a48503922a459ee18280d1e4af03247f31ef7de204f26a9f5526e8f49253301d6546149985bec93ca262ab8668e73f6b4b6f3c84e70665a66cb59bb SHA512 4989d9fd3702893d2b275e6de593a2109a0ebd10c0329ddca82cd3d53893a93197b9ca9f3756c480c88dc345e14527b1a540810089a480d839814e018a736bee -DIST htslib-1.22.1.tar.bz2 4840271 BLAKE2B 6d4f5726f23a0d0c4c8b34055ec22610e3ffb647449cb0066487866a6c5f50282ee4cf9c3681e57fab58f712dd13f16094a3b10f35c32c9919a200fe036c1f3e SHA512 f4d67ad6b32df270f25c9dcdab334c9a0fde4cc266bb2c45191728ee10a648c70589666943c9d7a7cc647406b540c84de9f3eb3c11c8f16d416f25f3387cd147 -DIST htslib-1.22.tar.bz2 4830206 BLAKE2B d37cad1d2c1d764fb98af7aae6f3b40c6e0458b1a89d3430dc28e9084497f949d7eca632fda45ef12655488fbeffefdce6975b3dced935703981acc4f0a902e7 SHA512 6721a398c285cdb14d879c00f13da425c1d84f75e8a3a5fb04db4f3f875b60122317651d54634c62f302b397026c98c2b4e190c1ae3ebcc2f0ecde8307223375 DIST htslib-1.23.1.tar.bz2 4987046 BLAKE2B bb8beb6ce435bb8a940c70edd830c54c90a626de553ddfb159a68cd9fca97a608ee2a4b3ae820b52730bf3be2fd0b8e1b1776f005bf18a39c6237df0451448a8 SHA512 abe3c7cf37c2300b5d2b82f9f0a88cb1b29f289aad829d2c1c7e39ca2ddafd9fd43efea3301a7e1fd1be1b91e5fbc32511961bb20f2aa1a58729ac84603d59f0 -DIST htslib-1.23.tar.bz2 4901098 BLAKE2B 764d4e8e82bf994acfe2d84aa2299c1bc72d6c65f04aa83282938f3fadca85fba558f3de27afca27621f929f7fa5c214b3e2fe9a5fc10f1b65ed76fff9fac793 SHA512 e35a8d614ed2ab8d7ffe0cecf99e66b97ac9f183fb3fe995c566a9c235d9a244a419abd7b50522e4306d1910fe6d80e19cdb9506b18bce3191b3720a34b023c1 diff --git a/sci-libs/htslib/htslib-1.21.ebuild b/sci-libs/htslib/htslib-1.21.ebuild deleted file mode 100644 index 42242497987eb..0000000000000 --- a/sci-libs/htslib/htslib-1.21.ebuild +++ /dev/null @@ -1,52 +0,0 @@ -# Copyright 1999-2025 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -inherit toolchain-funcs - -DESCRIPTION="C library for high-throughput sequencing data formats" -HOMEPAGE="http://www.htslib.org/" -SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2" - -LICENSE="MIT" -SLOT="0/3" -KEYWORDS="~amd64 ~x86" -IUSE="+bzip2 curl +lzma" - -RDEPEND=" - virtual/zlib:= - bzip2? ( app-arch/bzip2 ) - curl? ( net-misc/curl ) - lzma? ( app-arch/xz-utils )" -DEPEND="${RDEPEND}" - -src_prepare() { - default - - # upstream injects LDFLAGS into the .pc file, - # which is a big nono for QA - sed -e '/^\(static_l\|Libs.private\|Requires.private\)/d' \ - -i htslib.pc.in || die -} - -src_configure() { - econf \ - --disable-gcs \ - --disable-plugins \ - --disable-s3 \ - $(use_enable bzip2 bz2) \ - $(use_enable curl libcurl) \ - $(use_enable lzma) -} - -src_compile() { - emake AR="$(tc-getAR)" -} - -src_install() { - default - - # doesn't use libtool, can't disable static libraries - find "${ED}" -name '*.a' -delete || die -} diff --git a/sci-libs/htslib/htslib-1.22.1.ebuild b/sci-libs/htslib/htslib-1.22.1.ebuild deleted file mode 100644 index 158a4e8e7a452..0000000000000 --- a/sci-libs/htslib/htslib-1.22.1.ebuild +++ /dev/null @@ -1,53 +0,0 @@ -# Copyright 1999-2025 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -inherit toolchain-funcs - -DESCRIPTION="C library for high-throughput sequencing data formats" -HOMEPAGE="http://www.htslib.org/" -SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2" - -LICENSE="MIT" -SLOT="0/3" -KEYWORDS="~amd64 ~x86" -IUSE="+bzip2 curl +lzma" - -RDEPEND=" - virtual/zlib:= - bzip2? ( app-arch/bzip2 ) - curl? ( net-misc/curl ) - lzma? ( app-arch/xz-utils )" -DEPEND="${RDEPEND}" - -src_prepare() { - default - - # upstream injects LDFLAGS into the .pc file, - # which is a big nono for QA - sed -e '/^\(static_l\|Libs.private\|Requires.private\)/d' \ - -i htslib.pc.in || die -} - -src_configure() { - econf \ - --disable-gcs \ - --disable-plugins \ - --disable-ref-cache \ - --disable-s3 \ - $(use_enable bzip2 bz2) \ - $(use_enable curl libcurl) \ - $(use_enable lzma) -} - -src_compile() { - emake AR="$(tc-getAR)" -} - -src_install() { - default - - # doesn't use libtool, can't disable static libraries - find "${ED}" -name '*.a' -delete || die -} diff --git a/sci-libs/htslib/htslib-1.22.ebuild b/sci-libs/htslib/htslib-1.22.ebuild deleted file mode 100644 index 158a4e8e7a452..0000000000000 --- a/sci-libs/htslib/htslib-1.22.ebuild +++ /dev/null @@ -1,53 +0,0 @@ -# Copyright 1999-2025 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -inherit toolchain-funcs - -DESCRIPTION="C library for high-throughput sequencing data formats" -HOMEPAGE="http://www.htslib.org/" -SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2" - -LICENSE="MIT" -SLOT="0/3" -KEYWORDS="~amd64 ~x86" -IUSE="+bzip2 curl +lzma" - -RDEPEND=" - virtual/zlib:= - bzip2? ( app-arch/bzip2 ) - curl? ( net-misc/curl ) - lzma? ( app-arch/xz-utils )" -DEPEND="${RDEPEND}" - -src_prepare() { - default - - # upstream injects LDFLAGS into the .pc file, - # which is a big nono for QA - sed -e '/^\(static_l\|Libs.private\|Requires.private\)/d' \ - -i htslib.pc.in || die -} - -src_configure() { - econf \ - --disable-gcs \ - --disable-plugins \ - --disable-ref-cache \ - --disable-s3 \ - $(use_enable bzip2 bz2) \ - $(use_enable curl libcurl) \ - $(use_enable lzma) -} - -src_compile() { - emake AR="$(tc-getAR)" -} - -src_install() { - default - - # doesn't use libtool, can't disable static libraries - find "${ED}" -name '*.a' -delete || die -} diff --git a/sci-libs/htslib/htslib-1.23.ebuild b/sci-libs/htslib/htslib-1.23.ebuild deleted file mode 100644 index 1c291ed7693bc..0000000000000 --- a/sci-libs/htslib/htslib-1.23.ebuild +++ /dev/null @@ -1,53 +0,0 @@ -# Copyright 1999-2026 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -inherit toolchain-funcs - -DESCRIPTION="C library for high-throughput sequencing data formats" -HOMEPAGE="http://www.htslib.org/" -SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2" - -LICENSE="MIT" -SLOT="0/3" -KEYWORDS="~amd64 ~x86" -IUSE="+bzip2 curl +lzma" - -RDEPEND=" - virtual/zlib:= - bzip2? ( app-arch/bzip2 ) - curl? ( net-misc/curl ) - lzma? ( app-arch/xz-utils )" -DEPEND="${RDEPEND}" - -src_prepare() { - default - - # upstream injects LDFLAGS into the .pc file, - # which is a big nono for QA - sed -e '/^\(static_l\|Libs.private\|Requires.private\)/d' \ - -i htslib.pc.in || die -} - -src_configure() { - econf \ - --disable-gcs \ - --disable-plugins \ - --disable-ref-cache \ - --disable-s3 \ - $(use_enable bzip2 bz2) \ - $(use_enable curl libcurl) \ - $(use_enable lzma) -} - -src_compile() { - emake AR="$(tc-getAR)" -} - -src_install() { - default - - # doesn't use libtool, can't disable static libraries - find "${ED}" -name '*.a' -delete || die -}