diff --git a/dev-python/pypdf/Manifest b/dev-python/pypdf/Manifest
index 88a75e8b77c79..e5452f5b4e704 100644
--- a/dev-python/pypdf/Manifest
+++ b/dev-python/pypdf/Manifest
@@ -1,3 +1,2 @@
-DIST pypdf-5.3.1.gh.tar.gz 8045063 BLAKE2B 03af1f1ac8be5ac63899515c21d1821a38b225923825ea0075a689cf299c0b8e73a66e8e8d2c8bd3c45ce1a01777c1fce0c5eaacdb2df1c59fef6b154b3c8714 SHA512 5f9b0efdb51f9d56d9c10f7660718755c0bb731c77337530ebdf47472e837a97d0516b105c657881e424d1cded2fc6b44a5c5415600f4dc562d56faf66551b2b
 DIST pypdf-5.4.0.gh.tar.gz 8046505 BLAKE2B 8816362edd28d0c0dc0ed2abbec56f0adfdf9377fe3770f494cf1dc301a2636a4ca579c86a6fa8ee65532965f347cc2b8c08df074131f7373d1ef6f9ab5125e6 SHA512 530853e2839164c3159c5d6b466ddd95859af2ed5473d7d1c1fbf8350d2860685439565cc50bf093fa4c662a04775660fd3e6e70f5fd134fcb9cdea93c88eac2
 DIST pypdf-sample-files-8c405ece5eff12396a34a1fae3276132002e1753.gh.tar.gz 11748093 BLAKE2B c5989200893b28a3c2062bb024a5cfc6f3389dc259ec129857979fa43469e1274559612b4d555499e2c7e16cf34be07825229932bf4d147fa6d7324d043e97d5 SHA512 c9771129b7668a2fd1fa79bb859ae9213f3d60341cf1b9937ff0eaab0de9bf4c35adcb7b896e93329038dc0f3809a0c697c523f8fe41b43030b0b029a88058e3
diff --git a/dev-python/pypdf/pypdf-5.3.1.ebuild b/dev-python/pypdf/pypdf-5.3.1.ebuild
deleted file mode 100644
index 739c881735c5e..0000000000000
--- a/dev-python/pypdf/pypdf-5.3.1.ebuild
+++ /dev/null
@@ -1,56 +0,0 @@
-# Copyright 1999-2025 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-DISTUTILS_USE_PEP517=flit
-PYTHON_COMPAT=( python3_{10..13} )
-
-inherit distutils-r1
-
-SAMPLE_COMMIT=8c405ece5eff12396a34a1fae3276132002e1753
-DESCRIPTION="Python library to work with PDF files"
-HOMEPAGE="
-	https://pypi.org/project/pypdf/
-	https://github.com/py-pdf/pypdf/
-"
-SRC_URI="
-	https://github.com/py-pdf/pypdf/archive/${PV}.tar.gz
-		-> ${P}.gh.tar.gz
-	test? (
-		https://github.com/py-pdf/sample-files/archive/${SAMPLE_COMMIT}.tar.gz
-			-> ${PN}-sample-files-${SAMPLE_COMMIT}.gh.tar.gz
-	)
-"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="amd64 arm64 ~ppc64 x86"
-
-RDEPEND="
-	$(python_gen_cond_dep '
-		>=dev-python/typing-extensions-4.0[${PYTHON_USEDEP}]
-	' 3.10)
-"
-BDEPEND="
-	test? (
-		dev-python/cryptography[${PYTHON_USEDEP}]
-		>=dev-python/pillow-8.0.0[jpeg,jpeg2k,tiff,zlib,${PYTHON_USEDEP}]
-		dev-python/pyyaml[${PYTHON_USEDEP}]
-	)
-"
-
-EPYTEST_XDIST=1
-distutils_enable_tests pytest
-
-src_unpack() {
-	default
-	if use test; then
-		mv "sample-files-${SAMPLE_COMMIT}"/* "${S}"/sample-files/ || die
-	fi
-}
-
-python_test() {
-	local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1
-	epytest -o addopts= -m "not enable_socket"
-}