diff --git a/sci-biology/bowtie/bowtie-2.2.6.ebuild b/sci-biology/bowtie/bowtie-2.2.6.ebuild
index 3cc3837b740fc..89064500da6c0 100644
--- a/sci-biology/bowtie/bowtie-2.2.6.ebuild
+++ b/sci-biology/bowtie/bowtie-2.2.6.ebuild
@@ -37,6 +37,7 @@ src_compile() {
emake \
CC="$(tc-getCC)" \
CPP="$(tc-getCXX)" \
+ CXX="$(tc-getCXX)" \
CFLAGS="" \
CXXFLAGS="" \
EXTRA_FLAGS="${LDFLAGS}" \
diff --git a/sci-biology/bowtie/metadata.xml b/sci-biology/bowtie/metadata.xml
index 58f2d3652fa77..6e56af71b3d13 100644
--- a/sci-biology/bowtie/metadata.xml
+++ b/sci-biology/bowtie/metadata.xml
@@ -6,7 +6,7 @@
bowtie-bio