mirror of
https://github.com/gentoo-mirror/gentoo.git
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dev-python/scipy: Remove old
Signed-off-by: Michał Górny <mgorny@gentoo.org>
This commit is contained in:
Michał Górny
parent
95288cb68a
commit
7e4a3d01df
@ -1,8 +1,2 @@
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||||
DIST scipy-1.15.3.tar.gz 59419214 BLAKE2B 526e6182e4991e52fea69452b7894b203d31089ee1f8640ef1bff8f1fa57c31a7179a1ab82325689f3b0a7b907c34adb64b80e640780c99e166f6999adbb1524 SHA512 009de94a64c9361b261788ef3577d636a20ca23ff5c8f12f5e19a4ba4d6177ef7ade0cf1a5ee740bd1c6d740193d70b314d1abd83ab65fcb5d5cf2d2ba06bfb1
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DIST scipy-1.16.0.tar.gz 30581216 BLAKE2B faab7755584acfb6f2aa6a9e36a1fef840212d9b2478002313b94fd3762317be3d705e09d10960146bfbed5274cab80bd2170ce5bc3368b5ab860e8b5fe2f346 SHA512 6a88cc1b2f3e4cc7c4d867238965521e41b0394614a5ffcc7179b379dad20c0889a7ce4195ef676e78d7aa8d6f83f88f1380da8b225b59c4b6b87a9e6579efb7
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DIST scipy-1.16.1.tar.gz 30580861 BLAKE2B 1013d6658d060954fe1bcebf418351c447a9edcbf811b0de170870f566ffa0f4f7d40b065cdd74dbaebb8c537e8e0384ab4e8e4638995e4b7652288536e86126 SHA512 979a74b9700de0e9731677c056830b1ad108a7376462e43a2a2523addc88bcd3580b84f73552b581d60a3d8774884545d42551f36111334a40268a41ab2513ba
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DIST scipy-1.16.2.tar.gz 30580599 BLAKE2B aec4039fe5798365fbe5147a4d6acea61e408ad0a533da4a3602e3c03a5a495f693b9b998a0417524621e6414e3bc847339364d6536e6b489cff43931253c87d SHA512 6b5c1ab6236af5d40850f8b77f8d47494dda9bccf814908ba306b4b3710359d18eb0dd880c05dc4f334cc298d0a2d54d271d5cd5b519190fcfba58524b1d8dce
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DIST scipy-html-1.15.3.zip 68590525 BLAKE2B f6473e273843e3eb2aa791be1b885a11ac2b77accdf00ea2d7bc78dc59228dede66259ff4d2ac616ceeb3152a80a8036226622240d963a8bce51dc0143b6aea4 SHA512 df59c2a53dc9c8a64631a2c9906762de046b9beefd759e0810afdcbb00e4da8800e83902d49fa81d791bccb0ed190e00f0ea4948b855e97ad9b5d7a0984d4eec
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DIST scipy-html-1.16.0.zip 71540070 BLAKE2B eca4f76e6e3f4747e8e6a1c432c7b9fd52638ae37e00f50733b3eb7bc9f165f507478a8331b3420f158a5f316ba72c0925bf8933b9392638f1d346871fb5dd0a SHA512 839cf7511d7dce320da2966c45ff62056f93b35687e6fd42f2b0725dd4389f50a8ce69d125043de2632861b0bf5187af591558f9019e3543825255edd2372c12
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DIST scipy-html-1.16.1.zip 71509503 BLAKE2B b2500a21a3b52fc0bb2c1ee2dfb085d84fd03537d89f8d65fc8e2ebce88aafb4641fa2edc982e5e665af173687323318df998dd0dae022e99ea5341bf6c57264 SHA512 6477db2dcc485c7798bcdc5f1b8fc617b5981efb3675df40259a99d6fb130b3523eca191fcdd31b31dc58f47d77366ca34d488d77a57648c50acdef80c25b36e
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DIST scipy-html-1.16.2.zip 71516578 BLAKE2B 244537f823e39b52e0b00df63f8f36088f5ef17e365f98415d1573883e9c0eee3f4376b149eaea9b70b34b34a294aeafae9f849050ab8161a8ecdb24172c2876 SHA512 15df0c7211cc4d32007b54015efc17edd1c9b23e8892b748ab946c5c1ea3e1840a00d9005b585cc0c6416bcef1e490f54ff919d3c0140ed95d8e469836751d5c
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@ -1,152 +0,0 @@
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# Copyright 1999-2025 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=8
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FORTRAN_NEEDED=fortran
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DISTUTILS_EXT=1
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DISTUTILS_USE_PEP517=meson-python
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PYTHON_COMPAT=( pypy3_11 python3_{11..13} )
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PYTHON_REQ_USE="threads(+)"
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inherit flag-o-matic fortran-2 distutils-r1
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DESCRIPTION="Scientific algorithms library for Python"
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HOMEPAGE="
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https://scipy.org/
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https://github.com/scipy/scipy/
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https://pypi.org/project/scipy/
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"
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if [[ ${PV} == *9999* ]] ; then
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inherit git-r3
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# Need submodules, so git for now.
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EGIT_REPO_URI="https://github.com/scipy/scipy"
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EGIT_BRANCH="maintenance/$(ver_cut 1-2).x"
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EGIT_SUBMODULES=( '*' )
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else
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inherit pypi
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# Upstream is often behind with doc updates
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DOC_PV=${PV}
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SRC_URI+="
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doc? (
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https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${DOC_PV}.zip
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)"
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if [[ ${PV} != *rc* ]] ; then
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KEYWORDS="amd64 arm arm64 ~loong ~ppc ppc64 ~riscv ~s390 ~sparc x86"
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fi
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fi
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LICENSE="BSD LGPL-2"
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SLOT="0"
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IUSE="doc +fortran test-rust"
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# pythran is needed in both BDEPEND (for /usr/bin/pythran) and in DEPEND
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# to actually compile code generated by pythran (headers and such needed).
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#
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# umfpack is technically optional but it's preferred to have it available.
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DEPEND="
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>=dev-python/numpy-1.23.5:=[lapack,${PYTHON_USEDEP}]
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sci-libs/arpack:=
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sci-libs/umfpack
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virtual/cblas
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>=virtual/lapack-3.8
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"
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RDEPEND="
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${DEPEND}
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dev-python/pillow[${PYTHON_USEDEP}]
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"
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DEPEND+="
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fortran? (
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>=dev-python/pythran-0.16.0[${PYTHON_USEDEP}]
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)
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"
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BDEPEND="
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dev-lang/swig
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>=dev-python/cython-3.0.8[${PYTHON_USEDEP}]
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>=dev-python/meson-python-0.15.0[${PYTHON_USEDEP}]
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>=dev-python/pybind11-2.13.2[${PYTHON_USEDEP}]
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>=dev-build/meson-1.5.0
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!kernel_Darwin? ( dev-util/patchelf )
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virtual/pkgconfig
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doc? ( app-arch/unzip )
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fortran? (
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>=dev-python/pythran-0.16.0[${PYTHON_USEDEP}]
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)
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test? (
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>=dev-python/hypothesis-6.30[${PYTHON_USEDEP}]
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)
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test-rust? (
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dev-python/pooch[${PYTHON_USEDEP}]
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)
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"
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EPYTEST_XDIST=1
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distutils_enable_tests pytest
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src_unpack() {
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default
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if use doc; then
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unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die
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fi
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}
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python_configure_all() {
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DISTUTILS_ARGS=(
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-Dblas=blas
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-Dlapack=lapack
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-Duse-pythran=$(usex fortran true false)
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)
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# https://bugs.gentoo.org/932721
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has_version '>=dev-python/numpy-2.0.0' && filter-lto
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}
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python_test() {
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cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
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local EPYTEST_DESELECT=(
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# Network
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scipy/datasets/tests/test_data.py::TestDatasets::test_existence_all
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scipy/datasets/tests/test_data.py::TestDatasets::test_ascent
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scipy/datasets/tests/test_data.py::TestDatasets::test_face
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scipy/datasets/tests/test_data.py::TestDatasets::test_electrocardiogram
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# Crashes with assertion, not a regression
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# https://github.com/scipy/scipy/issues/19321
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scipy/signal/tests/test_signaltools.py::test_lfilter_bad_object
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)
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local EPYTEST_IGNORE=()
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if ! has_version -b "dev-python/pooch[${PYTHON_USEDEP}]" ; then
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EPYTEST_IGNORE+=(
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scipy/datasets/tests/test_data.py
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)
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fi
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case ${EPYTHON} in
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pypy3*)
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EPYTEST_DESELECT+=(
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# TODO
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'scipy/special/tests/test_data.py::test_boost[<Data for expi: expinti_data_long_ipp-expinti_data_long>]'
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'scipy/_lib/tests/test_ccallback.py::test_callbacks'
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)
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;;
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esac
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local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1
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# avoid other stuff being multithreaded when using xdist
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local -x PYTHON_CPU_COUNT=1
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epytest scipy
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}
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python_install_all() {
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use doc && local HTML_DOCS=( "${WORKDIR}"/html/. )
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distutils-r1_python_install_all
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}
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@ -1,174 +0,0 @@
|
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# Copyright 1999-2025 Gentoo Authors
|
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# Distributed under the terms of the GNU General Public License v2
|
||||
|
||||
EAPI=8
|
||||
|
||||
FORTRAN_NEEDED=fortran
|
||||
DISTUTILS_EXT=1
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||||
DISTUTILS_USE_PEP517=meson-python
|
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PYTHON_COMPAT=( pypy3_11 python3_{11..13} )
|
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PYTHON_REQ_USE="threads(+)"
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|
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inherit flag-o-matic fortran-2 distutils-r1
|
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|
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DESCRIPTION="Scientific algorithms library for Python"
|
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HOMEPAGE="
|
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https://scipy.org/
|
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https://github.com/scipy/scipy/
|
||||
https://pypi.org/project/scipy/
|
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"
|
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|
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if [[ ${PV} == *9999* ]] ; then
|
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inherit git-r3
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# Need submodules, so git for now.
|
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EGIT_REPO_URI="https://github.com/scipy/scipy"
|
||||
EGIT_BRANCH="maintenance/$(ver_cut 1-2).x"
|
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EGIT_SUBMODULES=( '*' )
|
||||
else
|
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inherit pypi
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# Upstream is often behind with doc updates
|
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DOC_PV=${PV}
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SRC_URI+="
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doc? (
|
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https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${DOC_PV}.zip
|
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)"
|
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|
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if [[ ${PV} != *rc* ]] ; then
|
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KEYWORDS="amd64 arm arm64 ~loong ~ppc ppc64 ~riscv ~s390 ~sparc x86"
|
||||
fi
|
||||
fi
|
||||
|
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LICENSE="BSD LGPL-2"
|
||||
SLOT="0"
|
||||
IUSE="doc +fortran test-rust"
|
||||
|
||||
# pythran is needed in both BDEPEND (for /usr/bin/pythran) and in DEPEND
|
||||
# to actually compile code generated by pythran (headers and such needed).
|
||||
#
|
||||
# umfpack is technically optional but it's preferred to have it available.
|
||||
COMMON_DEPEND="
|
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>=dev-python/numpy-1.23.5:=[lapack,${PYTHON_USEDEP}]
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~media-libs/qhull-2020.2:=
|
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sci-libs/arpack:=
|
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sci-libs/umfpack
|
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virtual/cblas
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>=virtual/lapack-3.8
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"
|
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# Only boost.math is used, and meson.build doesn't even look up specific boost modules.
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# Exact version is enforced upstream, so building will fail if subslot isn't enforced.
|
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DEPEND="
|
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${COMMON_DEPEND}
|
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dev-libs/boost:0/1.88.0
|
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"
|
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RDEPEND="
|
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${COMMON_DEPEND}
|
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dev-python/pillow[${PYTHON_USEDEP}]
|
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"
|
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DEPEND+="
|
||||
fortran? (
|
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>=dev-python/pythran-0.16.0[${PYTHON_USEDEP}]
|
||||
)
|
||||
"
|
||||
BDEPEND="
|
||||
dev-lang/swig
|
||||
>=dev-python/cython-3.0.8[${PYTHON_USEDEP}]
|
||||
>=dev-python/meson-python-0.15.0[${PYTHON_USEDEP}]
|
||||
>=dev-python/pybind11-2.13.2[${PYTHON_USEDEP}]
|
||||
>=dev-build/meson-1.5.0
|
||||
!kernel_Darwin? ( dev-util/patchelf )
|
||||
virtual/pkgconfig
|
||||
doc? ( app-arch/unzip )
|
||||
fortran? (
|
||||
>=dev-python/pythran-0.16.0[${PYTHON_USEDEP}]
|
||||
)
|
||||
test? (
|
||||
>=dev-python/hypothesis-6.30[${PYTHON_USEDEP}]
|
||||
)
|
||||
test-rust? (
|
||||
dev-python/pooch[${PYTHON_USEDEP}]
|
||||
)
|
||||
"
|
||||
|
||||
EPYTEST_XDIST=1
|
||||
distutils_enable_tests pytest
|
||||
|
||||
src_unpack() {
|
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default
|
||||
|
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if use doc; then
|
||||
unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die
|
||||
fi
|
||||
}
|
||||
|
||||
python_configure_all() {
|
||||
DISTUTILS_ARGS=(
|
||||
-Dblas=blas
|
||||
-Dlapack=lapack
|
||||
-Duse-pythran=$(usex fortran true false)
|
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# note: recheck on version bumps, upstream is planning
|
||||
# to allow more
|
||||
'-Duse-system-libraries=boost.math,qhull'
|
||||
)
|
||||
|
||||
# https://bugs.gentoo.org/932721
|
||||
has_version '>=dev-python/numpy-2.0.0' && filter-lto
|
||||
}
|
||||
|
||||
python_test() {
|
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cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
|
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|
||||
local EPYTEST_DESELECT=(
|
||||
# Network
|
||||
scipy/datasets/tests/test_data.py::TestDatasets::test_existence_all
|
||||
scipy/datasets/tests/test_data.py::TestDatasets::test_ascent
|
||||
scipy/datasets/tests/test_data.py::TestDatasets::test_face
|
||||
scipy/datasets/tests/test_data.py::TestDatasets::test_electrocardiogram
|
||||
|
||||
# Crashes with assertion, not a regression
|
||||
# https://github.com/scipy/scipy/issues/19321
|
||||
scipy/signal/tests/test_signaltools.py::test_lfilter_bad_object
|
||||
|
||||
# Awfully slow tests
|
||||
scipy/interpolate/tests/test_bsplines.py::TestBatch::test_batch
|
||||
scipy/linalg/tests/test_basic.py::TestLstsq::test_random_complex_exact
|
||||
scipy/sparse/linalg/_eigen/tests/test_svds.py::test_small_sigma_sparse
|
||||
|
||||
# TODO: minor precision errors
|
||||
'scipy/linalg/tests/test_batch.py::TestBatch::test_solve[float32-bdim2]'
|
||||
'scipy/linalg/tests/test_batch.py::TestBatch::test_lu_solve[float32-bdim2]'
|
||||
|
||||
# Crashes, probably too big
|
||||
'scipy/interpolate/tests/test_fitpack2.py::TestRectBivariateSpline::test_spline_large_2d_maxit'
|
||||
)
|
||||
local EPYTEST_IGNORE=()
|
||||
|
||||
if ! has_version -b "dev-python/pooch[${PYTHON_USEDEP}]" ; then
|
||||
EPYTEST_IGNORE+=(
|
||||
scipy/datasets/tests/test_data.py
|
||||
)
|
||||
fi
|
||||
|
||||
case ${EPYTHON} in
|
||||
pypy3*)
|
||||
EPYTEST_DESELECT+=(
|
||||
# TODO
|
||||
scipy/special/tests/test_data.py::test_boost
|
||||
scipy/_lib/tests/test_ccallback.py::test_callbacks
|
||||
)
|
||||
;;
|
||||
esac
|
||||
|
||||
local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1
|
||||
# avoid other stuff being multithreaded when using xdist
|
||||
local -x PYTHON_CPU_COUNT=1
|
||||
epytest scipy
|
||||
}
|
||||
|
||||
python_install_all() {
|
||||
use doc && local HTML_DOCS=( "${WORKDIR}"/html/. )
|
||||
|
||||
distutils-r1_python_install_all
|
||||
}
|
||||
@ -1,171 +0,0 @@
|
||||
# Copyright 1999-2025 Gentoo Authors
|
||||
# Distributed under the terms of the GNU General Public License v2
|
||||
|
||||
EAPI=8
|
||||
|
||||
FORTRAN_NEEDED=fortran
|
||||
DISTUTILS_EXT=1
|
||||
DISTUTILS_USE_PEP517=meson-python
|
||||
PYTHON_COMPAT=( pypy3_11 python3_{11..13} )
|
||||
PYTHON_REQ_USE="threads(+)"
|
||||
|
||||
inherit flag-o-matic fortran-2 distutils-r1
|
||||
|
||||
DESCRIPTION="Scientific algorithms library for Python"
|
||||
HOMEPAGE="
|
||||
https://scipy.org/
|
||||
https://github.com/scipy/scipy/
|
||||
https://pypi.org/project/scipy/
|
||||
"
|
||||
|
||||
if [[ ${PV} == *9999* ]] ; then
|
||||
inherit git-r3
|
||||
|
||||
# Need submodules, so git for now.
|
||||
EGIT_REPO_URI="https://github.com/scipy/scipy"
|
||||
EGIT_BRANCH="maintenance/$(ver_cut 1-2).x"
|
||||
EGIT_SUBMODULES=( '*' )
|
||||
else
|
||||
inherit pypi
|
||||
|
||||
# Upstream is often behind with doc updates
|
||||
DOC_PV=${PV}
|
||||
|
||||
SRC_URI+="
|
||||
doc? (
|
||||
https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${DOC_PV}.zip
|
||||
)"
|
||||
|
||||
if [[ ${PV} != *rc* ]] ; then
|
||||
KEYWORDS="~amd64 ~arm ~arm64 ~loong ~ppc ~ppc64 ~riscv ~s390 ~sparc ~x86"
|
||||
fi
|
||||
fi
|
||||
|
||||
LICENSE="BSD LGPL-2"
|
||||
SLOT="0"
|
||||
IUSE="doc +fortran test-rust"
|
||||
|
||||
# pythran is needed in both BDEPEND (for /usr/bin/pythran) and in DEPEND
|
||||
# to actually compile code generated by pythran (headers and such needed).
|
||||
#
|
||||
# umfpack is technically optional but it's preferred to have it available.
|
||||
COMMON_DEPEND="
|
||||
>=dev-python/numpy-1.23.5:=[lapack,${PYTHON_USEDEP}]
|
||||
~media-libs/qhull-2020.2:=
|
||||
sci-libs/arpack:=
|
||||
sci-libs/umfpack
|
||||
virtual/cblas
|
||||
>=virtual/lapack-3.8
|
||||
"
|
||||
# Only boost.math is used, and meson.build doesn't even look up specific boost modules.
|
||||
# Exact version is enforced upstream, so building will fail if subslot isn't enforced.
|
||||
DEPEND="
|
||||
${COMMON_DEPEND}
|
||||
dev-libs/boost:0/1.88.0
|
||||
"
|
||||
RDEPEND="
|
||||
${COMMON_DEPEND}
|
||||
dev-python/pillow[${PYTHON_USEDEP}]
|
||||
"
|
||||
DEPEND+="
|
||||
fortran? (
|
||||
>=dev-python/pythran-0.16.0[${PYTHON_USEDEP}]
|
||||
)
|
||||
"
|
||||
BDEPEND="
|
||||
dev-lang/swig
|
||||
>=dev-python/cython-3.0.8[${PYTHON_USEDEP}]
|
||||
>=dev-python/meson-python-0.15.0[${PYTHON_USEDEP}]
|
||||
>=dev-python/pybind11-2.13.2[${PYTHON_USEDEP}]
|
||||
>=dev-build/meson-1.5.0
|
||||
!kernel_Darwin? ( dev-util/patchelf )
|
||||
virtual/pkgconfig
|
||||
doc? ( app-arch/unzip )
|
||||
fortran? (
|
||||
>=dev-python/pythran-0.16.0[${PYTHON_USEDEP}]
|
||||
)
|
||||
test-rust? (
|
||||
dev-python/pooch[${PYTHON_USEDEP}]
|
||||
)
|
||||
"
|
||||
|
||||
EPYTEST_PLUGINS=( hypothesis )
|
||||
EPYTEST_XDIST=1
|
||||
distutils_enable_tests pytest
|
||||
|
||||
src_unpack() {
|
||||
default
|
||||
|
||||
if use doc; then
|
||||
unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die
|
||||
fi
|
||||
}
|
||||
|
||||
python_configure_all() {
|
||||
DISTUTILS_ARGS=(
|
||||
-Dblas=blas
|
||||
-Dlapack=lapack
|
||||
-Duse-pythran=$(usex fortran true false)
|
||||
# note: recheck on version bumps, upstream is planning
|
||||
# to allow more
|
||||
'-Duse-system-libraries=boost.math,qhull'
|
||||
)
|
||||
|
||||
# https://bugs.gentoo.org/932721
|
||||
has_version '>=dev-python/numpy-2.0.0' && filter-lto
|
||||
}
|
||||
|
||||
python_test() {
|
||||
cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
|
||||
|
||||
local EPYTEST_DESELECT=(
|
||||
# Network
|
||||
scipy/datasets/tests/test_data.py::TestDatasets::test_existence_all
|
||||
scipy/datasets/tests/test_data.py::TestDatasets::test_ascent
|
||||
scipy/datasets/tests/test_data.py::TestDatasets::test_face
|
||||
scipy/datasets/tests/test_data.py::TestDatasets::test_electrocardiogram
|
||||
|
||||
# Crashes with assertion, not a regression
|
||||
# https://github.com/scipy/scipy/issues/19321
|
||||
scipy/signal/tests/test_signaltools.py::test_lfilter_bad_object
|
||||
|
||||
# Awfully slow tests
|
||||
scipy/interpolate/tests/test_bsplines.py::TestBatch::test_batch
|
||||
scipy/linalg/tests/test_basic.py::TestLstsq::test_random_complex_exact
|
||||
scipy/sparse/linalg/_eigen/tests/test_svds.py::test_small_sigma_sparse
|
||||
|
||||
# TODO: minor precision errors
|
||||
'scipy/linalg/tests/test_batch.py::TestBatch::test_solve[float32-bdim2]'
|
||||
'scipy/linalg/tests/test_batch.py::TestBatch::test_lu_solve[float32-bdim2]'
|
||||
|
||||
# Crashes, probably too big
|
||||
'scipy/interpolate/tests/test_fitpack2.py::TestRectBivariateSpline::test_spline_large_2d_maxit'
|
||||
)
|
||||
local EPYTEST_IGNORE=()
|
||||
|
||||
if ! has_version -b "dev-python/pooch[${PYTHON_USEDEP}]" ; then
|
||||
EPYTEST_IGNORE+=(
|
||||
scipy/datasets/tests/test_data.py
|
||||
)
|
||||
fi
|
||||
|
||||
case ${EPYTHON} in
|
||||
pypy3*)
|
||||
EPYTEST_DESELECT+=(
|
||||
# TODO
|
||||
scipy/special/tests/test_data.py::test_boost
|
||||
scipy/_lib/tests/test_ccallback.py::test_callbacks
|
||||
)
|
||||
;;
|
||||
esac
|
||||
|
||||
# avoid other stuff being multithreaded when using xdist
|
||||
local -x PYTHON_CPU_COUNT=1
|
||||
epytest scipy
|
||||
}
|
||||
|
||||
python_install_all() {
|
||||
use doc && local HTML_DOCS=( "${WORKDIR}"/html/. )
|
||||
|
||||
distutils-r1_python_install_all
|
||||
}
|
||||
@ -1,180 +0,0 @@
|
||||
# Copyright 1999-2025 Gentoo Authors
|
||||
# Distributed under the terms of the GNU General Public License v2
|
||||
|
||||
EAPI=8
|
||||
|
||||
FORTRAN_NEEDED=fortran
|
||||
DISTUTILS_EXT=1
|
||||
DISTUTILS_USE_PEP517=meson-python
|
||||
PYTHON_COMPAT=( pypy3_11 python3_{11..13} )
|
||||
PYTHON_REQ_USE="threads(+)"
|
||||
|
||||
inherit flag-o-matic fortran-2 distutils-r1
|
||||
|
||||
DESCRIPTION="Scientific algorithms library for Python"
|
||||
HOMEPAGE="
|
||||
https://scipy.org/
|
||||
https://github.com/scipy/scipy/
|
||||
https://pypi.org/project/scipy/
|
||||
"
|
||||
|
||||
if [[ ${PV} == *9999* ]] ; then
|
||||
inherit git-r3
|
||||
|
||||
# Need submodules, so git for now.
|
||||
EGIT_REPO_URI="https://github.com/scipy/scipy"
|
||||
EGIT_BRANCH="maintenance/$(ver_cut 1-2).x"
|
||||
EGIT_SUBMODULES=( '*' )
|
||||
else
|
||||
inherit pypi
|
||||
|
||||
# Upstream is often behind with doc updates
|
||||
DOC_PV=${PV}
|
||||
|
||||
SRC_URI+="
|
||||
doc? (
|
||||
https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${DOC_PV}.zip
|
||||
)"
|
||||
|
||||
if [[ ${PV} != *rc* ]] ; then
|
||||
KEYWORDS="~amd64 ~arm ~arm64 ~loong ~ppc ~ppc64 ~riscv ~s390 ~sparc ~x86"
|
||||
fi
|
||||
fi
|
||||
|
||||
LICENSE="BSD LGPL-2"
|
||||
SLOT="0"
|
||||
IUSE="doc +fortran test-rust"
|
||||
|
||||
# pythran is needed in both BDEPEND (for /usr/bin/pythran) and in DEPEND
|
||||
# to actually compile code generated by pythran (headers and such needed).
|
||||
#
|
||||
# umfpack is technically optional but it's preferred to have it available.
|
||||
COMMON_DEPEND="
|
||||
>=dev-python/numpy-1.23.5:=[lapack,${PYTHON_USEDEP}]
|
||||
~media-libs/qhull-2020.2:=
|
||||
sci-libs/arpack:=
|
||||
sci-libs/umfpack
|
||||
virtual/cblas
|
||||
>=virtual/lapack-3.8
|
||||
"
|
||||
# Only boost.math is used, and meson.build doesn't even look up specific boost modules.
|
||||
# Exact version is enforced upstream, so building will fail if subslot isn't enforced.
|
||||
DEPEND="
|
||||
${COMMON_DEPEND}
|
||||
dev-libs/boost:0/1.88.0
|
||||
"
|
||||
RDEPEND="
|
||||
${COMMON_DEPEND}
|
||||
dev-python/pillow[${PYTHON_USEDEP}]
|
||||
"
|
||||
DEPEND+="
|
||||
fortran? (
|
||||
>=dev-python/pythran-0.16.0[${PYTHON_USEDEP}]
|
||||
)
|
||||
"
|
||||
BDEPEND="
|
||||
dev-lang/swig
|
||||
>=dev-python/cython-3.0.8[${PYTHON_USEDEP}]
|
||||
>=dev-python/meson-python-0.15.0[${PYTHON_USEDEP}]
|
||||
>=dev-python/pybind11-2.13.2[${PYTHON_USEDEP}]
|
||||
>=dev-python/pytest-8.0.0[${PYTHON_USEDEP}]
|
||||
>=dev-build/meson-1.5.0
|
||||
!kernel_Darwin? ( dev-util/patchelf )
|
||||
virtual/pkgconfig
|
||||
doc? ( app-arch/unzip )
|
||||
fortran? (
|
||||
>=dev-python/pythran-0.16.0[${PYTHON_USEDEP}]
|
||||
)
|
||||
test-rust? (
|
||||
dev-python/pooch[${PYTHON_USEDEP}]
|
||||
)
|
||||
"
|
||||
|
||||
EPYTEST_PLUGINS=( hypothesis )
|
||||
EPYTEST_XDIST=1
|
||||
distutils_enable_tests pytest
|
||||
|
||||
src_unpack() {
|
||||
default
|
||||
|
||||
if use doc; then
|
||||
unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die
|
||||
fi
|
||||
}
|
||||
|
||||
python_configure_all() {
|
||||
DISTUTILS_ARGS=(
|
||||
-Dblas=blas
|
||||
-Dlapack=lapack
|
||||
-Duse-pythran=$(usex fortran true false)
|
||||
# note: recheck on version bumps, upstream is planning
|
||||
# to allow more
|
||||
'-Duse-system-libraries=boost.math,qhull'
|
||||
)
|
||||
|
||||
# https://bugs.gentoo.org/932721
|
||||
has_version '>=dev-python/numpy-2.0.0' && filter-lto
|
||||
}
|
||||
|
||||
python_test() {
|
||||
# We run tests in parallel, so avoid having n^2 threads in lapack
|
||||
# tests.
|
||||
local -x BLIS_NUM_THREADS=1
|
||||
local -x MKL_NUM_THREADS=1
|
||||
local -x OMP_NUM_THREADS=1
|
||||
local -x OPENBLAS_NUM_THREADS=1
|
||||
|
||||
cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
|
||||
|
||||
local EPYTEST_DESELECT=(
|
||||
# Network
|
||||
scipy/datasets/tests/test_data.py::TestDatasets::test_existence_all
|
||||
scipy/datasets/tests/test_data.py::TestDatasets::test_ascent
|
||||
scipy/datasets/tests/test_data.py::TestDatasets::test_face
|
||||
scipy/datasets/tests/test_data.py::TestDatasets::test_electrocardiogram
|
||||
|
||||
# Crashes with assertion, not a regression
|
||||
# https://github.com/scipy/scipy/issues/19321
|
||||
scipy/signal/tests/test_signaltools.py::test_lfilter_bad_object
|
||||
|
||||
# Awfully slow tests
|
||||
scipy/interpolate/tests/test_bsplines.py::TestBatch::test_batch
|
||||
scipy/linalg/tests/test_basic.py::TestLstsq::test_random_complex_exact
|
||||
scipy/sparse/linalg/_eigen/tests/test_svds.py::test_small_sigma_sparse
|
||||
|
||||
# TODO: minor precision errors
|
||||
'scipy/linalg/tests/test_batch.py::TestBatch::test_solve[float32-bdim2]'
|
||||
'scipy/linalg/tests/test_batch.py::TestBatch::test_lu_solve[float32-bdim2]'
|
||||
'scipy/stats/tests/test_continuous.py::TestDistributions::test_funcs[cdf-methods11-x-Normal]['
|
||||
|
||||
# Crashes, probably too big
|
||||
'scipy/interpolate/tests/test_fitpack2.py::TestRectBivariateSpline::test_spline_large_2d_maxit'
|
||||
)
|
||||
local EPYTEST_IGNORE=()
|
||||
|
||||
if ! has_version -b "dev-python/pooch[${PYTHON_USEDEP}]" ; then
|
||||
EPYTEST_IGNORE+=(
|
||||
scipy/datasets/tests/test_data.py
|
||||
)
|
||||
fi
|
||||
|
||||
case ${EPYTHON} in
|
||||
pypy3*)
|
||||
EPYTEST_DESELECT+=(
|
||||
# TODO
|
||||
scipy/special/tests/test_data.py::test_boost
|
||||
scipy/_lib/tests/test_ccallback.py::test_callbacks
|
||||
)
|
||||
;;
|
||||
esac
|
||||
|
||||
# avoid other stuff being multithreaded when using xdist
|
||||
local -x PYTHON_CPU_COUNT=1
|
||||
epytest scipy
|
||||
}
|
||||
|
||||
python_install_all() {
|
||||
use doc && local HTML_DOCS=( "${WORKDIR}"/html/. )
|
||||
|
||||
distutils-r1_python_install_all
|
||||
}
|
||||
Loading…
x
Reference in New Issue
Block a user