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dev-python/astropy: Version bump
Package-Manager: portage-2.2.28
This commit is contained in:
Sébastien Fabbro
@@ -1,2 +1,3 @@
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DIST astropy-1.0.6.tar.gz 7632331 SHA256 1a0190ad420323b9bd8f7b29995a39580d7d59c5329c825bb5abb52e2f7b936d SHA512 84e02204bc55d3bd6e0e891dc56ab218d1deb65882d5d771b3f80c2a11790f77c103b0c0d5537f1842d98f0d3ded19039c82482c15147edadac89e9707537b40 WHIRLPOOL b20e5c2e3677485eaf22c71c7e3461443d4a92bf7b0e649f5e0153e0b1d46741958e983b743aa30bf07ad971a0c865e53211963653ddf814a5d4362f36f07b02
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DIST astropy-1.1.1.tar.gz 8157305 SHA256 4d2e7a8bd5191a66d7e1a52beefb4a0b6f496a1e9e8212422613219cb514769f SHA512 bc3c370da32d5f0098dbfc2808dba9d4d4424d3dcfba4d7ffd84b39569387b79ad93086e10678c259237f9cfe1229725501d0dc4eba51c9d01a4cd8a72024fb4 WHIRLPOOL 5b40955f56e6f080ad93b224eabd345565ef9f5e7f5ccb00e2737bd714117bc9b35922a044fe4ccaddb9d30fa72e13dd560577392120bfbd0a9d10c8aaa5aa01
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DIST astropy-1.1.2.tar.gz 8059713 SHA256 6f0d84cd7dfb304bb437dda666406a1d42208c16204043bc920308ff8ffdfad1 SHA512 b83c4a1415a3eb8c016507705d0d2f22971e4da937bb97953eec08f8f856933d8fa76ce8c536122235b19e7879b16add2e20fd2fee3e488f9b2b4bf1b9f4dbdb WHIRLPOOL 01cdfd33c29f7128e88be3f53b7ecdec37d95ba06acae6ceeba83746e0454aa220396fb00519b30639ac01b5b297fad004488d34856295735e04924d154c4eb9
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98
dev-python/astropy/astropy-1.1.2.ebuild
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98
dev-python/astropy/astropy-1.1.2.ebuild
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@@ -0,0 +1,98 @@
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# Copyright 1999-2016 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Id$
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EAPI=6
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PYTHON_COMPAT=( python2_7 python3_{4,5} )
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inherit distutils-r1
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DESCRIPTION="Core functionality for performing astrophysics with Python"
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HOMEPAGE="http://astropy.org/"
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SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
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LICENSE="BSD"
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SLOT="0"
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KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
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IUSE="doc test"
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RDEPEND="
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>=dev-libs/expat-2.1.0:0=
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dev-python/configobj[${PYTHON_USEDEP}]
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dev-python/numpy[${PYTHON_USEDEP}]
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dev-python/ply[${PYTHON_USEDEP}]
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dev-python/six[${PYTHON_USEDEP}]
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>=sci-astronomy/erfa-1.2:0=
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>=sci-astronomy/wcslib-5:0=
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sci-libs/cfitsio:0=
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sys-libs/zlib:0="
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DEPEND="${RDEPEND}
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>=dev-python/astropy-helpers-1.1[${PYTHON_USEDEP}]
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dev-python/cython[${PYTHON_USEDEP}]
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dev-python/setuptools[${PYTHON_USEDEP}]
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virtual/pkgconfig
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doc? (
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media-gfx/graphviz
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$(python_gen_cond_dep 'dev-libs/libxml2[${PYTHON_USEDEP}]' python2_7)
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$(python_gen_cond_dep 'dev-python/h5py[${PYTHON_USEDEP}]' python2_7)
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$(python_gen_cond_dep 'dev-python/matplotlib[${PYTHON_USEDEP}]' python2_7)
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$(python_gen_cond_dep 'dev-python/pytest[${PYTHON_USEDEP}]' python2_7)
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$(python_gen_cond_dep 'dev-python/sphinx[${PYTHON_USEDEP}]' python2_7)
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$(python_gen_cond_dep 'dev-python/wcsaxes[${PYTHON_USEDEP}]' python2_7)
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$(python_gen_cond_dep 'sci-libs/scipy[${PYTHON_USEDEP}]'python2_7)
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)
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test? (
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dev-libs/libxml2[${PYTHON_USEDEP}]
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dev-python/pytest[${PYTHON_USEDEP}]
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dev-python/h5py[${PYTHON_USEDEP}]
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dev-python/matplotlib[${PYTHON_USEDEP}]
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sci-libs/scipy[${PYTHON_USEDEP}]
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)"
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REQUIRED_USE="doc? ( || ( $(python_gen_useflags 'python2*') ) )"
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PATCHES=(
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"${FILESDIR}/${PN}-1.0.4-system-six.patch"
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"${FILESDIR}/${PN}-1.0.4-system-configobj.patch"
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"${FILESDIR}/${PN}-1.1.1-mark-kown-failures.patch"
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"${FILESDIR}/${PN}-1.1.2-fix-for-pytest-28.patch"
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"${FILESDIR}/${PN}-1.1.2-cfitsio-338.patch"
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)
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pkg_setup() {
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use doc && DISTUTILS_ALL_SUBPHASE_IMPLS=( 'python2*' )
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}
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python_prepare_all() {
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export mydistutilsargs="--offline"
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export ASTROPY_USE_SYSTEM_PYTEST=True
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rm -r ${PN}_helpers || die
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cp "${FILESDIR}"/astropy-ply.py astropy/extern/ply.py || die
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rm -r cextern/{expat,erfa,cfitsio,wcslib} || die
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sed -i -e '/auto_use/s/True/False/' setup.cfg || die
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cat >> setup.cfg <<-EOF
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[build]
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use_system_libraries=1
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EOF
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distutils-r1_python_prepare_all
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}
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python_compile_all() {
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if use doc; then
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python_setup "python2*"
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VARTEXFONTS="${T}"/fonts \
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MPLCONFIGDIR="${BUILD_DIR}" \
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PYTHONPATH="${BUILD_DIR}"/lib \
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esetup.py build_sphinx
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fi
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}
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python_test() {
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esetup.py test
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}
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python_install_all() {
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use doc && local HTML_DOCS=( docs/_build/html/. )
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distutils-r1_python_install_all
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}
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35
dev-python/astropy/files/astropy-1.1.2-cfitsio-338.patch
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35
dev-python/astropy/files/astropy-1.1.2-cfitsio-338.patch
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@@ -0,0 +1,35 @@
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Author: Ole Streicher <olebole@debian.org>
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Description: Make TFORMx check more flexible
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The maximal column length in cfitsio changed between version 3370 and 3380.
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This patch checks their syntax, without a specific length.
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Bug: https://github.com/astropy/astropy/issues/4646
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--- a/astropy/io/fits/tests/test_image.py
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+++ b/astropy/io/fits/tests/test_image.py
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@@ -4,6 +4,7 @@
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import math
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import os
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+import re
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import time
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import warnings
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@@ -1010,7 +1011,7 @@
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hdu.writeto(self.temp('test.fits'))
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with fits.open(self.temp('test.fits')) as hdul:
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- assert (hdul['SCI'].data == cube).all()
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+ assert np.abs(hdul['SCI'].data - cube).max() < 1./15.
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def test_subtractive_dither_seed(self):
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"""
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@@ -1265,8 +1266,8 @@
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with fits.open(self.temp('test.fits'),
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disable_image_compression=True) as h:
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- assert h[1].header['TFORM1'] == '1PB(30)'
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- assert h[1].header['TFORM2'] == '1PB(359)'
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+ assert re.match(r'^1PB\(\d+\)$', h[1].header['TFORM1'])
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+ assert re.match(r'^1PB\(\d+\)$', h[1].header['TFORM2'])
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def test_compression_update_header(self):
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"""Regression test for
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@@ -0,0 +1,37 @@
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From e904df784b91fd45e7dfcdec0713c471bb03efff Mon Sep 17 00:00:00 2001
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From: Thomas Robitaille <thomas.robitaille@gmail.com>
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Date: Fri, 1 Jan 2016 19:36:39 +0000
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Bug: https://bugs.debian.org/812648
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Bug: https://github.com/astropy/astropy/pull/4349
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Subject: [PATCH] Fixes to pytest plugins for pytest >= 2.8.0
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--- a/astropy/tests/pytest_plugins.py
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+++ b/astropy/tests/pytest_plugins.py
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@@ -161,7 +161,10 @@
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# handling __doctest_skip__) doesn't happen.
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def collect(self):
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if self.fspath.basename == "conftest.py":
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- module = self.config._conftest.importconftest(self.fspath)
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+ try:
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+ module = self.config._conftest.importconftest(self.fspath)
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+ except AttributeError: # pytest >= 2.8.0
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+ module = self.config.pluginmanager._importconftest(self.fspath)
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else:
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try:
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module = self.fspath.pyimport()
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@@ -191,8 +194,14 @@
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def runtest(self):
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# satisfy `FixtureRequest` constructor...
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self.funcargs = {}
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- self._fixtureinfo = doctest_plugin.FuncFixtureInfo((), [], {})
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- fixture_request = doctest_plugin.FixtureRequest(self)
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+ try:
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+ self._fixtureinfo = doctest_plugin.FuncFixtureInfo((), [], {})
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+ fixture_request = doctest_plugin.FixtureRequest(self)
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+ except AttributeError: # pytest >= 2.8.0
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+ python_plugin = config.pluginmanager.getplugin('python')
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+ self._fixtureinfo = python_plugin.FuncFixtureInfo((), [], {})
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+ fixture_request = python_plugin.FixtureRequest(self)
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+
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failed, tot = doctest.testfile(
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str(self.fspath), module_relative=False,
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optionflags=opts, parser=DocTestParserPlus(),
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