diff --git a/dev-perl/Boulder/Boulder-1.300.0-r2.ebuild b/dev-perl/Boulder/Boulder-1.300.0-r2.ebuild new file mode 100644 index 0000000000000..a9c75068e9baa --- /dev/null +++ b/dev-perl/Boulder/Boulder-1.300.0-r2.ebuild @@ -0,0 +1,51 @@ +# Copyright 1999-2019 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +DIST_AUTHOR=LDS +DIST_VERSION=1.30 +DIST_EXAMPLES=( "eg/*" ) +inherit perl-module + +DESCRIPTION="An API for hierarchical tag/value structures" + +SLOT="0" +KEYWORDS="~amd64 ~ia64 ~ppc ~sparc ~x86" +IUSE="genbank store xml" + +RDEPEND=" + genbank? ( dev-perl/CGI ) + store? ( virtual/perl-DB_File ) + xml? ( dev-perl/XML-Parser ) +" +DEPEND="${RDEPEND} + virtual/perl-ExtUtils-MakeMaker +" +PATCHES=( + "${FILESDIR}/${PN}-${DIST_VERSION}-no-xml-parser-check.patch" +) +PERL_RM_FILES=( + # Incomplete, instructs not to use, deps not in Gentoo + "Boulder/Labbase.pm" +) +src_prepare() { + use xml || PERL_RM_FILES+=( + "Boulder/XML.pm" + ) + use genbank || PERL_RM_FILES+=( + "Boulder/Genbank.pm" + "Stone/GB_Sequence.pm" + "doc/genbank_tags.txt" + "eg/gb_get" + "eg/gb_search" + "eg/genbank.pl" + "eg/genbank2.pl" + "eg/genbank3.pl" + ) + use store || PERL_RM_FILES+=( + "Boulder/Store.pm" + "t/store.t" + ) + perl-module_src_prepare +} diff --git a/dev-perl/Boulder/files/Boulder-1.30-no-xml-parser-check.patch b/dev-perl/Boulder/files/Boulder-1.30-no-xml-parser-check.patch new file mode 100644 index 0000000000000..13ce87969fb16 --- /dev/null +++ b/dev-perl/Boulder/files/Boulder-1.30-no-xml-parser-check.patch @@ -0,0 +1,30 @@ +From 82eaa751a4aebb6cce70b83407c1fafd13334130 Mon Sep 17 00:00:00 2001 +From: Kent Fredric +Date: Wed, 10 Jul 2019 02:58:13 +1200 +Subject: Remove hardcoded XML::Parser check + +This test isn't necessary and is a vestigal side effect of old build +chains that didn't have prereqs. + +As this dependency is only needed if you're using Boulder::XML, its +rather redundant. +--- + Makefile.PL | 3 --- + 1 file changed, 3 deletions(-) + +diff --git a/Makefile.PL b/Makefile.PL +index 2fe3176..245f16e 100644 +--- a/Makefile.PL ++++ b/Makefile.PL +@@ -1,8 +1,5 @@ + use ExtUtils::MakeMaker; + +-eval "use XML::Parser; 1" +- || warn "XML::Parser module not found. This module is required to use Boulder::XML\n"; +- + WriteMakefile( + 'NAME' => 'Boulder', + 'DISTNAME' => 'Boulder', +-- +2.22.0 + diff --git a/dev-perl/Boulder/metadata.xml b/dev-perl/Boulder/metadata.xml index 31ec77c200098..2971ad7b7ca49 100644 --- a/dev-perl/Boulder/metadata.xml +++ b/dev-perl/Boulder/metadata.xml @@ -12,7 +12,6 @@ Boulder::Blast::NCBI Boulder::Blast::WU Boulder::Genbank - Boulder::Labbase Boulder::LocusLink Boulder::Medline Boulder::Omim @@ -35,4 +34,9 @@ UnigeneAccessor Yank + + Provide support with Boulder::Genbank for decoding Genbank data records + Provide support with Boulder::Store for persisting Stone objects + +