diff --git a/sci-libs/hdf5/Manifest b/sci-libs/hdf5/Manifest
index 54270f9e0c895..172f6d6a80296 100644
--- a/sci-libs/hdf5/Manifest
+++ b/sci-libs/hdf5/Manifest
@@ -1,3 +1,2 @@
DIST hdf5-1.10.5.tar.bz2 8706317 BLAKE2B ac326be8fe4ccc4b0153f15bc7d65aa8f1adc2ae279d3980f57ed46722b754d3f36ecf1d6273c75e80ed1afd4bbf10c6b1c5d9408e1f83a4b2e397e7902a7d3c SHA512 769e43b8672e26fe24ed68da0228c010d3d9bc950ca09f0bc60707911a2f26f2f8415c8abc8ec06e07667148d8cdb3b0c7b3e7860d9b19739629c5dfd5ce73d4
-DIST hdf5-1.12.1.tar.bz2 9724309 BLAKE2B cc75ba497188b33972218d02a7601acad1a0443bdb934ecd1641ef5996076fe120e3b72dba3a99d99f919fb4e478d1e531414448de9a7b97a0afde58a4c7c23f SHA512 158a067ee284ccb9e2c4db12e9d37cf187d90d9ef1bed7a6303e2c3a2fd216d7b13a46c5f46018b097511281c4246156b6f917633ca88872f10f0ad04be285fd
DIST hdf5-1.12.2.tar.bz2 10494264 BLAKE2B 99ca5b57f6f54fa044c909f0773de62b218c1f0ec3c011f88f3c227536dd719e77ddbe42d562b1214e8843e41d8fc56db499d7f122876fdd36ef31b235229cb7 SHA512 cbb4663570de76b11adb6bf62cfdb754371d31eeab04691479a5764a45207a9c1309665ab80f51c63a4b9b87354f9cbe6835cef506a9fd554d142c6d2bec21e5
diff --git a/sci-libs/hdf5/files/hdf5-1.12.1-cmake_installdirs.patch b/sci-libs/hdf5/files/hdf5-1.12.1-cmake_installdirs.patch
deleted file mode 100644
index 8c4dc34cb80cf..0000000000000
--- a/sci-libs/hdf5/files/hdf5-1.12.1-cmake_installdirs.patch
+++ /dev/null
@@ -1,103 +0,0 @@
---- a/c++/src/CMakeLists.txt
-+++ b/c++/src/CMakeLists.txt
-@@ -180,8 +180,8 @@
- #-----------------------------------------------------------------------------
- set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX})
- set (_PKG_CONFIG_EXEC_PREFIX \${prefix})
--set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib)
--set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include)
-+set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR})
-+set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR})
- set (_PKG_CONFIG_LIBNAME "${HDF5_CPP_LIB_CORENAME}")
- set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}")
-
---- a/CMakeLists.txt
-+++ b/CMakeLists.txt
-@@ -46,6 +46,13 @@
- endif()
- endif ()
-
-+include (GNUInstallDirs)
-+set (HDF5_INSTALL_BIN_DIR "${CMAKE_INSTALL_FULL_BINDIR}")
-+set (HDF5_INSTALL_DATA_DIR "${CMAKE_INSTALL_FULL_DATADIR}")
-+set (HDF5_INSTALL_DOC_DIR "${CMAKE_INSTALL_FULL_DOCDIR}")
-+set (HDF5_INSTALL_INCLUDE_DIR "${CMAKE_INSTALL_FULL_INCLUDEDIR}")
-+set (HDF5_INSTALL_LIB_DIR "${CMAKE_INSTALL_FULL_LIBDIR}")
-+
- #-----------------------------------------------------------------------------
- # Instructions for use : Sub-Project Build
- #
---- a/fortran/src/CMakeLists.txt
-+++ b/fortran/src/CMakeLists.txt
-@@ -537,8 +537,8 @@
- #-----------------------------------------------------------------------------
- set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX})
- set (_PKG_CONFIG_EXEC_PREFIX \${prefix})
--set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib)
--set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include)
-+set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR})
-+set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR})
- set (_PKG_CONFIG_LIBNAME "${HDF5_F90_LIB_CORENAME}")
- set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}")
-
---- a/hl/c++/src/CMakeLists.txt
-+++ b/hl/c++/src/CMakeLists.txt
-@@ -91,8 +91,8 @@
- #-----------------------------------------------------------------------------
- set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX})
- set (_PKG_CONFIG_EXEC_PREFIX \${prefix})
--set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib)
--set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include)
-+set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR})
-+set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR})
- set (_PKG_CONFIG_LIBNAME "${HDF5_HL_CPP_LIB_CORENAME}")
- set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}")
-
---- a/hl/fortran/src/CMakeLists.txt
-+++ b/hl/fortran/src/CMakeLists.txt
-@@ -324,8 +324,8 @@
- #-----------------------------------------------------------------------------
- set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX})
- set (_PKG_CONFIG_EXEC_PREFIX \${prefix})
--set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib)
--set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include)
-+set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR})
-+set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR})
- set (_PKG_CONFIG_LIBNAME "${HDF5_HL_F90_LIB_CORENAME}")
- set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}")
-
---- a/hl/src/CMakeLists.txt
-+++ b/hl/src/CMakeLists.txt
-@@ -123,8 +123,8 @@
- #-----------------------------------------------------------------------------
- set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX})
- set (_PKG_CONFIG_EXEC_PREFIX \${prefix})
--set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib)
--set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include)
-+set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR})
-+set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR})
- set (_PKG_CONFIG_LIBNAME "${HDF5_HL_LIB_CORENAME}")
- set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}")
-
---- a/src/CMakeLists.txt
-+++ b/src/CMakeLists.txt
-@@ -1311,8 +1311,8 @@
- #-----------------------------------------------------------------------------
- set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX})
- set (_PKG_CONFIG_EXEC_PREFIX \${prefix})
--set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib)
--set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include)
-+set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR})
-+set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR})
- set (_PKG_CONFIG_LIBNAME "${HDF5_LIB_CORENAME}")
- set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}")
-
-@@ -1419,7 +1419,7 @@
- # )
- install (
- DIRECTORY ${HDF5_BINARY_DIR}/hdf5lib_docs/html
-- DESTINATION ${HDF5_INSTALL_DATA_DIR}
-+ DESTINATION ${HDF5_INSTALL_DOC_DIR}
- COMPONENT Documents
- )
-
diff --git a/sci-libs/hdf5/files/hdf5-1.12.2-cmake_installdirs.patch b/sci-libs/hdf5/files/hdf5-1.12.2-cmake_installdirs.patch
deleted file mode 100644
index 6ea7520c0f13b..0000000000000
--- a/sci-libs/hdf5/files/hdf5-1.12.2-cmake_installdirs.patch
+++ /dev/null
@@ -1,164 +0,0 @@
-https://github.com/HDFGroup/hdf5/pull/1716
---- a/CMakeLists.txt
-+++ b/CMakeLists.txt
-@@ -46,6 +46,13 @@ if (CMAKE_VERSION VERSION_LESS "3.14.0")
- endif()
- endif ()
-
-+include (GNUInstallDirs)
-+set (HDF5_INSTALL_BIN_DIR "${CMAKE_INSTALL_FULL_BINDIR}")
-+set (HDF5_INSTALL_DATA_DIR "${CMAKE_INSTALL_FULL_DATADIR}")
-+set (HDF5_INSTALL_DOC_DIR "${CMAKE_INSTALL_FULL_DOCDIR}")
-+set (HDF5_INSTALL_INCLUDE_DIR "${CMAKE_INSTALL_FULL_INCLUDEDIR}")
-+set (HDF5_INSTALL_LIB_DIR "${CMAKE_INSTALL_FULL_LIBDIR}")
-+
- #-----------------------------------------------------------------------------
- # Instructions for use : Sub-Project Build
- #
---- a/c++/src/CMakeLists.txt
-+++ b/c++/src/CMakeLists.txt
-@@ -173,8 +173,8 @@ endif ()
- #-----------------------------------------------------------------------------
- set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX})
- set (_PKG_CONFIG_EXEC_PREFIX \${prefix})
--set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib)
--set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include)
-+set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR})
-+set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR})
- set (_PKG_CONFIG_LIBNAME "${HDF5_CPP_LIB_CORENAME}")
- set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}")
-
---- a/doxygen/CMakeLists.txt
-+++ b/doxygen/CMakeLists.txt
-@@ -36,7 +36,7 @@ if (DOXYGEN_FOUND)
-
- install (
- DIRECTORY ${HDF5_BINARY_DIR}/hdf5lib_docs/html
-- DESTINATION ${HDF5_INSTALL_DATA_DIR}
-+ DESTINATION ${HDF5_INSTALL_DOC_DIR}
- COMPONENT Documents
- )
-
---- a/fortran/src/CMakeLists.txt
-+++ b/fortran/src/CMakeLists.txt
-@@ -537,8 +537,8 @@ endif ()
- #-----------------------------------------------------------------------------
- set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX})
- set (_PKG_CONFIG_EXEC_PREFIX \${prefix})
--set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib)
--set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include)
-+set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR})
-+set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR})
- set (_PKG_CONFIG_LIBNAME "${HDF5_F90_LIB_CORENAME}")
- set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}")
-
---- a/hl/c++/src/CMakeLists.txt
-+++ b/hl/c++/src/CMakeLists.txt
-@@ -91,8 +91,8 @@ endif ()
- #-----------------------------------------------------------------------------
- set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX})
- set (_PKG_CONFIG_EXEC_PREFIX \${prefix})
--set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib)
--set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include)
-+set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR})
-+set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR})
- set (_PKG_CONFIG_LIBNAME "${HDF5_HL_CPP_LIB_CORENAME}")
- set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}")
-
---- a/hl/fortran/src/CMakeLists.txt
-+++ b/hl/fortran/src/CMakeLists.txt
-@@ -324,8 +324,8 @@ endif ()
- #-----------------------------------------------------------------------------
- set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX})
- set (_PKG_CONFIG_EXEC_PREFIX \${prefix})
--set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib)
--set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include)
-+set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR})
-+set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR})
- set (_PKG_CONFIG_LIBNAME "${HDF5_HL_F90_LIB_CORENAME}")
- set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}")
-
---- a/hl/src/CMakeLists.txt
-+++ b/hl/src/CMakeLists.txt
-@@ -123,8 +123,8 @@ endif ()
- #-----------------------------------------------------------------------------
- set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX})
- set (_PKG_CONFIG_EXEC_PREFIX \${prefix})
--set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib)
--set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include)
-+set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR})
-+set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR})
- set (_PKG_CONFIG_LIBNAME "${HDF5_HL_LIB_CORENAME}")
- set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}")
-
---- a/src/CMakeLists.txt
-+++ b/src/CMakeLists.txt
-@@ -1288,8 +1288,8 @@ endif ()
- #-----------------------------------------------------------------------------
- set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX})
- set (_PKG_CONFIG_EXEC_PREFIX \${prefix})
--set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib)
--set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include)
-+set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR})
-+set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR})
- set (_PKG_CONFIG_LIBNAME "${HDF5_LIB_CORENAME}")
- set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}")
-
---- a/CMakeInstallation.cmake
-+++ b/CMakeInstallation.cmake
-@@ -31,7 +31,7 @@ if (NOT HDF5_EXTERNALLY_CONFIGURED)
- if (HDF5_EXPORTED_TARGETS)
- install (
- EXPORT ${HDF5_EXPORTED_TARGETS}
-- DESTINATION ${HDF5_INSTALL_CMAKE_DIR}
-+ DESTINATION ${HDF5_INSTALL_LIB_DIR}/cmake
- FILE ${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-targets.cmake
- NAMESPACE ${HDF_PACKAGE_NAMESPACE}
- COMPONENT configinstall
-@@ -67,12 +67,12 @@ set (HDF5_VERSION_MINOR ${HDF5_PACKAGE_VERSION_MINOR})
- # Configure the hdf5-config.cmake file for the build directory
- #-----------------------------------------------------------------------------
- set (INCLUDE_INSTALL_DIR ${HDF5_INSTALL_INCLUDE_DIR})
--set (SHARE_INSTALL_DIR "${CMAKE_CURRENT_BINARY_DIR}/${HDF5_INSTALL_CMAKE_DIR}" )
-+set (SHARE_INSTALL_DIR "${CMAKE_CURRENT_BINARY_DIR}/${HDF5_INSTALL_LIB_DIR}/cmake" )
- set (CURRENT_BUILD_DIR "${CMAKE_CURRENT_BINARY_DIR}" )
- configure_package_config_file (
- ${HDF_RESOURCES_DIR}/hdf5-config.cmake.in
- "${HDF5_BINARY_DIR}/${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-config.cmake"
-- INSTALL_DESTINATION "${HDF5_INSTALL_CMAKE_DIR}"
-+ INSTALL_DESTINATION "${HDF5_INSTALL_LIB_DIR}/cmake"
- PATH_VARS INCLUDE_INSTALL_DIR SHARE_INSTALL_DIR CURRENT_BUILD_DIR
- INSTALL_PREFIX "${CMAKE_CURRENT_BINARY_DIR}"
- )
-@@ -81,19 +81,19 @@ configure_package_config_file (
- # Configure the hdf5-config.cmake file for the install directory
- #-----------------------------------------------------------------------------
- set (INCLUDE_INSTALL_DIR ${HDF5_INSTALL_INCLUDE_DIR})
--set (SHARE_INSTALL_DIR "${CMAKE_INSTALL_PREFIX}/${HDF5_INSTALL_CMAKE_DIR}" )
-+set (SHARE_INSTALL_DIR "${CMAKE_INSTALL_PREFIX}/${HDF5_INSTALL_LIB_DIR}/cmake" )
- set (CURRENT_BUILD_DIR "${CMAKE_INSTALL_PREFIX}" )
- configure_package_config_file (
- ${HDF_RESOURCES_DIR}/hdf5-config.cmake.in
- "${HDF5_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-config.cmake"
-- INSTALL_DESTINATION "${HDF5_INSTALL_CMAKE_DIR}"
-+ INSTALL_DESTINATION "${HDF5_INSTALL_LIB_DIR}/cmake"
- PATH_VARS INCLUDE_INSTALL_DIR SHARE_INSTALL_DIR CURRENT_BUILD_DIR
- )
-
- if (NOT HDF5_EXTERNALLY_CONFIGURED)
- install (
- FILES ${HDF5_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-config.cmake
-- DESTINATION ${HDF5_INSTALL_CMAKE_DIR}
-+ DESTINATION ${HDF5_INSTALL_LIB_DIR}/cmake
- COMPONENT configinstall
- )
- endif ()
-@@ -109,7 +109,7 @@ if (NOT HDF5_EXTERNALLY_CONFIGURED)
- )
- install (
- FILES ${HDF5_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-config-version.cmake
-- DESTINATION ${HDF5_INSTALL_CMAKE_DIR}
-+ DESTINATION ${HDF5_INSTALL_LIB_DIR}/cmake
- COMPONENT configinstall
- )
- endif ()
diff --git a/sci-libs/hdf5/hdf5-1.10.5.ebuild b/sci-libs/hdf5/hdf5-1.10.5.ebuild
deleted file mode 100644
index 1b6770c23e14e..0000000000000
--- a/sci-libs/hdf5/hdf5-1.10.5.ebuild
+++ /dev/null
@@ -1,102 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-FORTRAN_NEEDED=fortran
-
-inherit autotools fortran-2 flag-o-matic toolchain-funcs prefix
-
-MY_P=${PN}-${PV/_p/-patch}
-MAJOR_P=${PN}-$(ver_cut 1-2)
-
-DESCRIPTION="General purpose library and file format for storing scientific data"
-HOMEPAGE="https://www.hdfgroup.org/HDF5/"
-SRC_URI="https://www.hdfgroup.org/ftp/HDF5/releases/${MAJOR_P}/${MY_P}/src/${MY_P}.tar.bz2"
-
-LICENSE="NCSA-HDF"
-SLOT="0/${PV%%_p*}"
-KEYWORDS="~alpha amd64 ~arm arm64 ~ia64 ppc ppc64 ~riscv sparc x86 ~amd64-linux ~x86-linux"
-IUSE="cxx debug examples fortran +hl mpi szip threads zlib"
-
-REQUIRED_USE="
- cxx? ( !mpi ) mpi? ( !cxx )
- threads? ( !cxx !mpi !fortran !hl )"
-
-RDEPEND="
- mpi? ( virtual/mpi[romio] )
- szip? ( virtual/szip )
- zlib? ( sys-libs/zlib:0= )"
-
-DEPEND="${RDEPEND}
- sys-devel/libtool:2
- >=sys-devel/autoconf-2.69"
-
-S="${WORKDIR}/${MY_P}"
-
-PATCHES=(
- "${FILESDIR}"/${PN}-1.8.9-static_libgfortran.patch
- "${FILESDIR}"/${PN}-1.8.9-mpicxx.patch
- "${FILESDIR}"/${PN}-1.8.13-no-messing-ldpath.patch
-)
-
-pkg_setup() {
- tc-export CXX CC AR # workaround for bug 285148
- use fortran && fortran-2_pkg_setup
-
- if use mpi; then
- if has_version 'sci-libs/hdf5[-mpi]'; then
- ewarn "Installing hdf5 with mpi enabled with a previous hdf5 with mpi disabled may fail."
- ewarn "Try to uninstall the current hdf5 prior to enabling mpi support."
- fi
- export CC=mpicc
- use fortran && export FC=mpif90
- elif has_version 'sci-libs/hdf5[mpi]'; then
- ewarn "Installing hdf5 with mpi disabled while having hdf5 installed with mpi enabled may fail."
- ewarn "Try to uninstall the current hdf5 prior to disabling mpi support."
- fi
-}
-
-src_prepare() {
- # respect gentoo examples directory
- sed \
- -e "s:hdf5_examples:doc/${PF}/examples:g" \
- -i $(find . -name Makefile.am) $(find . -name "run*.sh.in") || die
- sed \
- -e '/docdir/d' \
- -i config/commence.am || die
- if ! use examples; then
- sed -e '/^install:/ s/install-examples//' \
- -i Makefile.am || die #409091
- fi
- # enable shared libs by default for h5cc config utility
- sed -i -e "s/SHLIB:-no/SHLIB:-yes/g" tools/src/misc/h5cc.in || die
- hprefixify m4/libtool.m4
-
- default
- eautomake
-}
-
-src_configure() {
- use sparc && tc-is-gcc && append-flags -fno-tree-ccp # bug 686620
- econf \
- --disable-static \
- --enable-deprecated-symbols \
- --enable-build-mode=$(usex debug debug production) \
- $(use_enable cxx) \
- $(use_enable debug codestack) \
- $(use_enable fortran) \
- $(use_enable hl) \
- $(use_enable mpi parallel) \
- $(use_enable threads threadsafe) \
- $(use_with szip szlib) \
- $(use_with threads pthread) \
- $(use_with zlib)
-}
-
-src_install() {
- default
-
- # no static archives
- find "${D}" -name '*.la' -delete || die
-}
diff --git a/sci-libs/hdf5/hdf5-1.12.1-r1.ebuild b/sci-libs/hdf5/hdf5-1.12.1-r1.ebuild
deleted file mode 100644
index 32a8891c81555..0000000000000
--- a/sci-libs/hdf5/hdf5-1.12.1-r1.ebuild
+++ /dev/null
@@ -1,128 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-FORTRAN_NEEDED="fortran"
-
-inherit cmake flag-o-matic fortran-2 toolchain-funcs
-
-MY_P="${PN}-${PV/_p/-patch}"
-MAJOR_P="${PN}-$(ver_cut 1-2)"
-
-DESCRIPTION="General purpose library and file format for storing scientific data"
-HOMEPAGE="https://www.hdfgroup.org/HDF5/"
-SRC_URI="https://www.hdfgroup.org/ftp/HDF5/releases/${MAJOR_P}/${MY_P}/src/${MY_P}.tar.bz2"
-
-LICENSE="NCSA-HDF"
-SLOT="0/${PV%%_p*}"
-KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~ppc ~ppc64 ~riscv ~s390 ~sparc ~x86 ~amd64-linux ~x86-linux"
-IUSE="cxx debug doc examples fortran +hl mpi ros3 szip test threads unsupported zlib"
-
-REQUIRED_USE="
- !unsupported? (
- mpi? ( !cxx !threads )
- threads? ( !cxx !fortran !hl )
- )"
-
-RESTRICT="!test? ( test )"
-
-RDEPEND="
- mpi? ( virtual/mpi[romio] )
- ros3? (
- net-misc/curl
- dev-libs/openssl:=
- )
- szip? ( virtual/szip )
- zlib? ( sys-libs/zlib:0= )
-"
-DEPEND="${RDEPEND}"
-BDEPEND="doc? (
- app-doc/doxygen
- virtual/latex-base
-)"
-
-PATCHES=(
- "${FILESDIR}"/${PN}-1.12.1-cmake_installdirs.patch
-)
-
-S="${WORKDIR}/${MY_P}"
-
-pkg_setup() {
- use fortran && fortran-2_pkg_setup
-
- if use mpi; then
- if has_version 'sci-libs/hdf5[-mpi]'; then
- ewarn "Installing hdf5 with mpi enabled with a previous hdf5 with mpi disabled may fail."
- ewarn "Try to uninstall the current hdf5 prior to enabling mpi support."
- fi
- export CC="mpicc"
- use fortran && export FC="mpif90"
- append-libs -lmpi
- elif has_version 'sci-libs/hdf5[mpi]'; then
- ewarn "Installing hdf5 with mpi disabled while having hdf5 installed with mpi enabled may fail."
- ewarn "Try to uninstall the current hdf5 prior to disabling mpi support."
- fi
-}
-
-src_configure() {
- use sparc && tc-is-gcc && append-flags -fno-tree-ccp # bug 686620
- local mycmakeargs=(
- # Workaround needed to allow build with USE=fortran when an older
- # version is installed. See bug #808633 and
- # https://github.com/HDFGroup/hdf5/issues/1027 upstream.
- -DCMAKE_INCLUDE_DIRECTORIES_PROJECT_BEFORE=ON
- -DBUILD_STATIC_LIBS=OFF
- -DFETCHCONTENT_FULLY_DISCONNECTED=ON
- -DHDF5_BUILD_EXAMPLES=OFF
- -DALLOW_UNSUPPORTED=$(usex unsupported)
- -DBUILD_TESTING=$(usex test)
- -DHDF5_BUILD_CPP_LIB=$(usex cxx)
- -DHDF5_BUILD_DOC=$(usex doc)
- -DHDF5_BUILD_FORTRAN=$(usex fortran)
- -DHDF5_BUILD_HL_LIB=$(usex hl)
- -DHDF5_ENABLE_CODESTACK=$(usex debug)
- -DHDF5_ENABLE_PARALLEL=$(usex mpi)
- -DHDF5_ENABLE_SZIP_ENCODING=$(usex szip)
- -DHDF5_ENABLE_SZIP_SUPPORT=$(usex szip)
- -DHDF5_ENABLE_THREADSAFE=$(usex threads)
- -DHDF5_ENABLE_Z_LIB_SUPPORT=$(usex zlib)
- -DHDF5_ENABLE_ROS3_VFD:BOOL=$(usex ros3)
- )
- cmake_src_configure
-}
-
-src_install() {
- cmake_src_install
-
- # TODO: generate functioning example runners from their respective
- # .in files - as of version 1.12.1 upstream only has it implemented
- # for autoconf.
- if use examples; then
- # These are all useless outside the source tree
- rm -f {examples,c++/examples,fortran/examples}/{Makefile*,CMake*}
- rm -f hl/{examples,c++/examples,fortran/examples}/{Makefile*,CMake*}
-
- dodoc -r examples
- if use cxx; then
- docinto c++
- dodoc -r c++/examples
- fi
- if use fortran; then
- docinto fortran
- dodoc -r fortran/examples
- fi
- if use hl; then
- docinto hl
- dodoc -r hl/examples
- if use cxx; then
- docinto hl/c++
- dodoc -r hl/c++/examples
- fi
- if use fortran; then
- docinto hl/fortran
- dodoc -r hl/fortran/examples
- fi
- fi
- fi
-}
diff --git a/sci-libs/hdf5/hdf5-1.12.1.ebuild b/sci-libs/hdf5/hdf5-1.12.1.ebuild
deleted file mode 100644
index 8248d6614f5ad..0000000000000
--- a/sci-libs/hdf5/hdf5-1.12.1.ebuild
+++ /dev/null
@@ -1,119 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-FORTRAN_NEEDED="fortran"
-
-inherit cmake flag-o-matic fortran-2 toolchain-funcs
-
-MY_P="${PN}-${PV/_p/-patch}"
-MAJOR_P="${PN}-$(ver_cut 1-2)"
-
-DESCRIPTION="General purpose library and file format for storing scientific data"
-HOMEPAGE="https://www.hdfgroup.org/HDF5/"
-SRC_URI="https://www.hdfgroup.org/ftp/HDF5/releases/${MAJOR_P}/${MY_P}/src/${MY_P}.tar.bz2"
-
-LICENSE="NCSA-HDF"
-SLOT="0/${PV%%_p*}"
-KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~ppc ~ppc64 ~riscv ~sparc ~x86 ~amd64-linux ~x86-linux"
-IUSE="cxx debug doc examples fortran +hl mpi szip test threads unsupported zlib"
-
-REQUIRED_USE="
- !unsupported? (
- mpi? ( !cxx !threads )
- threads? ( !cxx !fortran !hl )
- )"
-
-RESTRICT="!test? ( test )"
-
-RDEPEND="
- mpi? ( virtual/mpi[romio] )
- szip? ( virtual/szip )
- zlib? ( sys-libs/zlib:0= )
-"
-DEPEND="${RDEPEND}"
-BDEPEND="doc? (
- app-doc/doxygen
- virtual/latex-base
-)"
-
-PATCHES=(
- "${FILESDIR}"/${PN}-1.12.1-cmake_installdirs.patch
-)
-
-S="${WORKDIR}/${MY_P}"
-
-pkg_setup() {
- use fortran && fortran-2_pkg_setup
-
- if use mpi; then
- if has_version 'sci-libs/hdf5[-mpi]'; then
- ewarn "Installing hdf5 with mpi enabled with a previous hdf5 with mpi disabled may fail."
- ewarn "Try to uninstall the current hdf5 prior to enabling mpi support."
- fi
- export CC="mpicc"
- use fortran && export FC="mpif90"
- append-libs -lmpi
- elif has_version 'sci-libs/hdf5[mpi]'; then
- ewarn "Installing hdf5 with mpi disabled while having hdf5 installed with mpi enabled may fail."
- ewarn "Try to uninstall the current hdf5 prior to disabling mpi support."
- fi
-}
-
-src_configure() {
- use sparc && tc-is-gcc && append-flags -fno-tree-ccp # bug 686620
- local mycmakeargs=(
- -DBUILD_STATIC_LIBS=OFF
- -DFETCHCONTENT_FULLY_DISCONNECTED=ON
- -DHDF5_BUILD_EXAMPLES=OFF
- -DALLOW_UNSUPPORTED=$(usex unsupported)
- -DBUILD_TESTING=$(usex test)
- -DHDF5_BUILD_CPP_LIB=$(usex cxx)
- -DHDF5_BUILD_DOC=$(usex doc)
- -DHDF5_BUILD_FORTRAN=$(usex fortran)
- -DHDF5_BUILD_HL_LIB=$(usex hl)
- -DHDF5_ENABLE_CODESTACK=$(usex debug)
- -DHDF5_ENABLE_PARALLEL=$(usex mpi)
- -DHDF5_ENABLE_SZIP_ENCODING=$(usex szip)
- -DHDF5_ENABLE_SZIP_SUPPORT=$(usex szip)
- -DHDF5_ENABLE_THREADSAFE=$(usex threads)
- -DHDF5_ENABLE_Z_LIB_SUPPORT=$(usex zlib)
- )
- cmake_src_configure
-}
-
-src_install() {
- cmake_src_install
-
- # TODO: generate functioning example runners from their respective
- # .in files - as of version 1.12.1 upstream only has it implemented
- # for autoconf.
- if use examples; then
- # These are all useless outside the source tree
- rm -f {examples,c++/examples,fortran/examples}/{Makefile*,CMake*}
- rm -f hl/{examples,c++/examples,fortran/examples}/{Makefile*,CMake*}
-
- dodoc -r examples
- if use cxx; then
- docinto c++
- dodoc -r c++/examples
- fi
- if use fortran; then
- docinto fortran
- dodoc -r fortran/examples
- fi
- if use hl; then
- docinto hl
- dodoc -r hl/examples
- if use cxx; then
- docinto hl/c++
- dodoc -r hl/c++/examples
- fi
- if use fortran; then
- docinto hl/fortran
- dodoc -r hl/fortran/examples
- fi
- fi
- fi
-}
diff --git a/sci-libs/hdf5/hdf5-1.12.2-r1.ebuild b/sci-libs/hdf5/hdf5-1.12.2-r1.ebuild
deleted file mode 100644
index 325f24396b293..0000000000000
--- a/sci-libs/hdf5/hdf5-1.12.2-r1.ebuild
+++ /dev/null
@@ -1,124 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-FORTRAN_NEEDED="fortran"
-
-inherit cmake flag-o-matic fortran-2 toolchain-funcs
-
-MY_P="${PN}-${PV/_p/-patch}"
-MAJOR_P="${PN}-$(ver_cut 1-2)"
-
-DESCRIPTION="General purpose library and file format for storing scientific data"
-HOMEPAGE="https://www.hdfgroup.org/HDF5/"
-SRC_URI="https://www.hdfgroup.org/ftp/HDF5/releases/${MAJOR_P}/${MY_P}/src/${MY_P}.tar.bz2"
-
-LICENSE="NCSA-HDF"
-SLOT="0/${PV%%_p*}"
-KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~ppc ~ppc64 ~riscv ~sparc ~x86 ~amd64-linux ~x86-linux"
-IUSE="cxx debug doc examples fortran +hl mpi szip test threads unsupported zlib"
-
-REQUIRED_USE="
- !unsupported? (
- mpi? ( !cxx !threads )
- threads? ( !cxx !fortran !hl )
- )"
-
-RESTRICT="!test? ( test )"
-
-RDEPEND="
- mpi? ( virtual/mpi[romio] )
- szip? ( virtual/szip )
- zlib? ( sys-libs/zlib:0= )
-"
-DEPEND="${RDEPEND}"
-BDEPEND="doc? (
- app-doc/doxygen
- virtual/latex-base
-)"
-
-PATCHES=(
- "${FILESDIR}"/${PN}-1.12.2-cmake_installdirs.patch
-)
-
-S="${WORKDIR}/${MY_P}"
-
-pkg_setup() {
- use fortran && fortran-2_pkg_setup
-
- if use mpi; then
- if has_version 'sci-libs/hdf5[-mpi]'; then
- ewarn "Installing hdf5 with mpi enabled with a previous hdf5 with mpi disabled may fail."
- ewarn "Try to uninstall the current hdf5 prior to enabling mpi support."
- fi
- export CC="mpicc"
- use fortran && export FC="mpif90"
- append-libs -lmpi
- elif has_version 'sci-libs/hdf5[mpi]'; then
- ewarn "Installing hdf5 with mpi disabled while having hdf5 installed with mpi enabled may fail."
- ewarn "Try to uninstall the current hdf5 prior to disabling mpi support."
- fi
-}
-
-src_configure() {
- use sparc && tc-is-gcc && append-flags -fno-tree-ccp # bug 686620
- local mycmakeargs=(
- # Workaround needed to allow build with USE=fortran when an older
- # version is installed. See bug #808633 and
- # https://github.com/HDFGroup/hdf5/issues/1027 upstream.
- -DCMAKE_INCLUDE_DIRECTORIES_PROJECT_BEFORE=ON
- -DBUILD_STATIC_LIBS=OFF
- -DONLY_SHARED_LIBS=ON
- -DFETCHCONTENT_FULLY_DISCONNECTED=ON
- -DHDF5_BUILD_EXAMPLES=OFF
- -DALLOW_UNSUPPORTED=$(usex unsupported)
- -DBUILD_TESTING=$(usex test)
- -DHDF5_BUILD_CPP_LIB=$(usex cxx)
- -DHDF5_BUILD_DOC=$(usex doc)
- -DHDF5_BUILD_FORTRAN=$(usex fortran)
- -DHDF5_BUILD_HL_LIB=$(usex hl)
- -DHDF5_ENABLE_CODESTACK=$(usex debug)
- -DHDF5_ENABLE_PARALLEL=$(usex mpi)
- -DHDF5_ENABLE_SZIP_ENCODING=$(usex szip)
- -DHDF5_ENABLE_SZIP_SUPPORT=$(usex szip)
- -DHDF5_ENABLE_THREADSAFE=$(usex threads)
- -DHDF5_ENABLE_Z_LIB_SUPPORT=$(usex zlib)
- )
- cmake_src_configure
-}
-
-src_install() {
- cmake_src_install
-
- # TODO: generate functioning example runners from their respective
- # .in files - as of version 1.12.1 upstream only has it implemented
- # for autoconf.
- if use examples; then
- # These are all useless outside the source tree
- rm -f {examples,c++/examples,fortran/examples}/{Makefile*,CMake*}
- rm -f hl/{examples,c++/examples,fortran/examples}/{Makefile*,CMake*}
-
- dodoc -r examples
- if use cxx; then
- docinto c++
- dodoc -r c++/examples
- fi
- if use fortran; then
- docinto fortran
- dodoc -r fortran/examples
- fi
- if use hl; then
- docinto hl
- dodoc -r hl/examples
- if use cxx; then
- docinto hl/c++
- dodoc -r hl/c++/examples
- fi
- if use fortran; then
- docinto hl/fortran
- dodoc -r hl/fortran/examples
- fi
- fi
- fi
-}
diff --git a/sci-libs/hdf5/hdf5-1.12.2-r2.ebuild b/sci-libs/hdf5/hdf5-1.12.2-r2.ebuild
deleted file mode 100644
index 12d13c181a048..0000000000000
--- a/sci-libs/hdf5/hdf5-1.12.2-r2.ebuild
+++ /dev/null
@@ -1,125 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-FORTRAN_NEEDED="fortran"
-
-inherit cmake flag-o-matic fortran-2 toolchain-funcs
-
-MY_P="${PN}-${PV/_p/-patch}"
-MAJOR_P="${PN}-$(ver_cut 1-2)"
-
-DESCRIPTION="General purpose library and file format for storing scientific data"
-HOMEPAGE="https://www.hdfgroup.org/HDF5/"
-SRC_URI="https://www.hdfgroup.org/ftp/HDF5/releases/${MAJOR_P}/${MY_P}/src/${MY_P}.tar.bz2"
-
-LICENSE="NCSA-HDF"
-SLOT="0/${PV%%_p*}"
-KEYWORDS="~alpha amd64 arm arm64 ~hppa ~ia64 ppc ppc64 ~riscv ~s390 sparc x86 ~amd64-linux ~x86-linux"
-IUSE="cxx debug doc examples fortran +hl mpi szip test threads unsupported zlib"
-
-REQUIRED_USE="
- !unsupported? (
- mpi? ( !cxx !threads )
- threads? ( !cxx !fortran !hl )
- )"
-
-RESTRICT="!test? ( test )"
-
-RDEPEND="
- mpi? ( virtual/mpi[romio] )
- szip? ( virtual/szip )
- zlib? ( sys-libs/zlib:0= )
-"
-DEPEND="${RDEPEND}"
-BDEPEND="doc? (
- app-doc/doxygen
- virtual/latex-base
-)"
-
-PATCHES=(
- "${FILESDIR}"/${PN}-1.12.2-cmake_installdirs.patch
-)
-
-S="${WORKDIR}/${MY_P}"
-
-pkg_setup() {
- use fortran && fortran-2_pkg_setup
-
- if use mpi; then
- if has_version 'sci-libs/hdf5[-mpi]'; then
- ewarn "Installing hdf5 with mpi enabled with a previous hdf5 with mpi disabled may fail."
- ewarn "Try to uninstall the current hdf5 prior to enabling mpi support."
- fi
- export CC="mpicc"
- use fortran && export FC="mpif90"
- append-libs -lmpi
- elif has_version 'sci-libs/hdf5[mpi]'; then
- ewarn "Installing hdf5 with mpi disabled while having hdf5 installed with mpi enabled may fail."
- ewarn "Try to uninstall the current hdf5 prior to disabling mpi support."
- fi
-}
-
-src_configure() {
- use sparc && tc-is-gcc && append-flags -fno-tree-ccp # bug 686620
- local mycmakeargs=(
- # Workaround needed to allow build with USE=fortran when an older
- # version is installed. See bug #808633 and
- # https://github.com/HDFGroup/hdf5/issues/1027 upstream.
- -DCMAKE_INCLUDE_DIRECTORIES_PROJECT_BEFORE=ON
- -DBUILD_STATIC_LIBS=OFF
- -DONLY_SHARED_LIBS=ON
- -DFETCHCONTENT_FULLY_DISCONNECTED=ON
- -DHDF5_BUILD_EXAMPLES=OFF
- -DH5_DEFAULT_PLUGINDIR="${EPREFIX}/usr/$(get_libdir)/hdf5/plugin"
- -DALLOW_UNSUPPORTED=$(usex unsupported)
- -DBUILD_TESTING=$(usex test)
- -DHDF5_BUILD_CPP_LIB=$(usex cxx)
- -DHDF5_BUILD_DOC=$(usex doc)
- -DHDF5_BUILD_FORTRAN=$(usex fortran)
- -DHDF5_BUILD_HL_LIB=$(usex hl)
- -DHDF5_ENABLE_CODESTACK=$(usex debug)
- -DHDF5_ENABLE_PARALLEL=$(usex mpi)
- -DHDF5_ENABLE_SZIP_ENCODING=$(usex szip)
- -DHDF5_ENABLE_SZIP_SUPPORT=$(usex szip)
- -DHDF5_ENABLE_THREADSAFE=$(usex threads)
- -DHDF5_ENABLE_Z_LIB_SUPPORT=$(usex zlib)
- )
- cmake_src_configure
-}
-
-src_install() {
- cmake_src_install
-
- # TODO: generate functioning example runners from their respective
- # .in files - as of version 1.12.1 upstream only has it implemented
- # for autoconf.
- if use examples; then
- # These are all useless outside the source tree
- rm -f {examples,c++/examples,fortran/examples}/{Makefile*,CMake*}
- rm -f hl/{examples,c++/examples,fortran/examples}/{Makefile*,CMake*}
-
- dodoc -r examples
- if use cxx; then
- docinto c++
- dodoc -r c++/examples
- fi
- if use fortran; then
- docinto fortran
- dodoc -r fortran/examples
- fi
- if use hl; then
- docinto hl
- dodoc -r hl/examples
- if use cxx; then
- docinto hl/c++
- dodoc -r hl/c++/examples
- fi
- if use fortran; then
- docinto hl/fortran
- dodoc -r hl/fortran/examples
- fi
- fi
- fi
-}
diff --git a/sci-libs/hdf5/metadata.xml b/sci-libs/hdf5/metadata.xml
index 8f7b63aa4610a..e36b723f35109 100644
--- a/sci-libs/hdf5/metadata.xml
+++ b/sci-libs/hdf5/metadata.xml
@@ -13,7 +13,6 @@